View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_low_11 (Length: 356)
Name: NF3960_low_11
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 72 - 338
Target Start/End: Complemental strand, 45386762 - 45386496
Alignment:
| Q |
72 |
ctgctgcaactccaccgcctccagcagagattttgctgagaattttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttcc |
171 |
Q |
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| T |
45386762 |
ctgctgcaactccaccgcctccagcagagattttgctgagagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttcc |
45386663 |
T |
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| Q |
172 |
aggtgttgaagaagtgataactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaag |
271 |
Q |
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| T |
45386662 |
aggtgttgaagaagtgataactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttcagaagaag |
45386563 |
T |
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| Q |
272 |
agtcacaggaaggttgagcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgagg |
338 |
Q |
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| T |
45386562 |
agtcacaggaaggttgagcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgagg |
45386496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 89 - 328
Target Start/End: Complemental strand, 45391114 - 45390875
Alignment:
| Q |
89 |
cctccagcagagattttgctgagaattttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
188 |
Q |
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| T |
45391114 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
45391015 |
T |
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| Q |
189 |
taactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttga |
288 |
Q |
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| T |
45391014 |
taactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaagagtcatagaaaggttga |
45390915 |
T |
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| Q |
289 |
gcttctttctccgatcccaattgctcctgaggaggaaaaa |
328 |
Q |
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| T |
45390914 |
gcttctttctccgatcccaattgctcctgaggaggaaaaa |
45390875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 89 - 328
Target Start/End: Complemental strand, 734722 - 734483
Alignment:
| Q |
89 |
cctccagcagagattttgctgagaattttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
188 |
Q |
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| T |
734722 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
734623 |
T |
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| Q |
189 |
taactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttga |
288 |
Q |
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| T |
734622 |
tagctgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaagagtcataggaaggttga |
734523 |
T |
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| Q |
289 |
gcttctttctccgatcccaattgctcctgaggaggaaaaa |
328 |
Q |
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| T |
734522 |
gcttctttctccgatcccaattgctcctgaggaggaaaaa |
734483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 308
Target Start/End: Complemental strand, 40578088 - 40577944
Alignment:
| Q |
164 |
gattttccaggtgttgaagaagtgataactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggtta |
263 |
Q |
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|||||| |||| |||||||| ||| | ||||||||||||||||| | ||| |||| |||||||| ||||| || |||||||||||| | || || ||| |
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| T |
40578088 |
gatttttcaggggttgaagatgtggttactgattgcaaatctcacaaggttattgttaaaggagaaaaagcggatccattgaaggttcttgaaagagttc |
40577989 |
T |
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| Q |
264 |
agaagaagagtcacaggaaggttgagcttctttctccgatcccaa |
308 |
Q |
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| T |
40577988 |
agaggaagagtcatagacaagttgagcttctttctccgatcccaa |
40577944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 40578224 - 40578165
Alignment:
| Q |
116 |
ttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggt |
175 |
Q |
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| T |
40578224 |
ttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
40578165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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