View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_low_13 (Length: 267)
Name: NF3960_low_13
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 8944433 - 8944200
Alignment:
| Q |
22 |
actgctgagctgatcaaatattatatacaaagcatgatgcacctttttctttgacaaagtatatatgctgactttacaatgtacctagccacggagtcgt |
121 |
Q |
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| T |
8944433 |
actgctgagctgatcaaacattatatacaaagcatgatgcacctttttctttgacaaagtatatatgctgactttacagtgtacctagccacggagtcgt |
8944334 |
T |
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| Q |
122 |
gtctccaaatcaatttgtccaaaaaatctgcactaatagtgatccctgcaatgacagcctctgactcaagcactaatagtgatccctttcacgagaacaa |
221 |
Q |
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| T |
8944333 |
gtctccaaatcaatttgtccgaaaaatctgcactaatagtgatccctgcaatgacagcctctgactcaagcaataatagtgatccctttcacgagaacaa |
8944234 |
T |
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| Q |
222 |
aggttgtctccagttcatgatccactcccatctg |
255 |
Q |
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| T |
8944233 |
aggttgtctccagttcatgctccactcccatctg |
8944200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 43564406 - 43564510
Alignment:
| Q |
79 |
agtatatatgctgactttacaatgtacctagccacggagtcgtgtctccaaatcaatttgtccaaaaaatctgcactaatagtgatccctgcaatgacag |
178 |
Q |
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||||||||||| |||||||| |||||| |||||||||||| |||||| ||| | |||||||| ||||||||||||| | ||||||||||||||| |||| |
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| T |
43564406 |
agtatatatgcagactttaccgtgtacccagccacggagtcatgtctctaaacccatttgtccgaaaaatctgcactcacagtgatccctgcaataacag |
43564505 |
T |
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| Q |
179 |
cctct |
183 |
Q |
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||||| |
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| T |
43564506 |
cctct |
43564510 |
T |
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