View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_low_16 (Length: 250)
Name: NF3960_low_16
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 4425033 - 4425264
Alignment:
| Q |
15 |
aaaggaagaagaagggaggacaaatcatgtagtagtagaatatgaagttcaaaaaacctttctcacagttttagaaggagtgaagaacagagtataagag |
114 |
Q |
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| T |
4425033 |
aaaggaagaagaagggaggacaaatcatgtagtagtagaatatgaagttcaaaaaacctttctcacagttttagaaggagtgaagaacagagtgtaagag |
4425132 |
T |
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| Q |
115 |
caagaaacaaagtagcaaattta---------------aaagactaaatattaatgtatcagaagnnnnnnnttgggatactttctttcacagcttttct |
199 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4425133 |
caagaaacaaagtagcaaatttaaaagactaagatttcaaagactaaatattaatgtatcagaagaaaaaaattgggatactttctttcacagcttttct |
4425232 |
T |
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| Q |
200 |
cccgcccacaaaaaccttccacatggttatgc |
231 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4425233 |
cccgcccacaaaaaccttccacatggttatgc |
4425264 |
T |
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