View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_low_17 (Length: 250)
Name: NF3960_low_17
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 54299890 - 54299664
Alignment:
| Q |
1 |
cttatcttttataggacgggtaagacctgcatccccttatgttggaagtttgcaacctgcccgtggtgcttacgttggaggttatggctaccaacaacct |
100 |
Q |
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| T |
54299890 |
cttatcttttataggacgggtaagacctgcatccccttatgttggaagtttgcaacctgcccgtggtgcttacgttggaggttatggctaccaacaacct |
54299791 |
T |
|
| Q |
101 |
atttcctatggctatcaacaaggaatggtttatcctccttatgggtgagtgggatgttgttgcacactattgcaaaaactggatttgaagattattttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54299790 |
ctttcctatggctatcaacaaggaatggtttatcctccttatgggtgagtgggatgttgttgcacactattgcaaaaactggatttgaagattattttca |
54299691 |
T |
|
| Q |
201 |
ccgtcagtctgctaataataatgctct |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
54299690 |
ccgtcagtctgctaataataatgctct |
54299664 |
T |
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