View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_low_19 (Length: 239)
Name: NF3960_low_19
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_low_19 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 2711399 - 2711621
Alignment:
| Q |
17 |
atgcactcccttctccaccttctaattggaataaaaaatacaccaaaaggcatatgtctgttatctgccttgcaagcttgtggtggagacactgtttttc |
116 |
Q |
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| T |
2711399 |
atgcactcccttctccatcttctaattggaataaaaaatacaccaaaaggcatatgtctgttatctgccttgcaagcttgtggtggagacactgtttttc |
2711498 |
T |
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| Q |
117 |
gagttgtgatttcctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2711499 |
gagttgtgatttcctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggaagtttaacaatctcactattaagcattgaaacaactg |
2711598 |
T |
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| Q |
217 |
tggccatattaggtctctccttt |
239 |
Q |
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||||||| |||||||||||||| |
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| T |
2711599 |
cggccatagtaggtctctccttt |
2711621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 2716468 - 2716577
Alignment:
| Q |
130 |
ctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactgtggccatattagg |
229 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2716468 |
ctctatgctcagtctgacttagaaggaatgcaggttgagatggatgaggaagtttaacaatctcactattaagcattgaaacaactgtggccatagtagg |
2716567 |
T |
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| Q |
230 |
tctctccttt |
239 |
Q |
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|||||||||| |
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| T |
2716568 |
tctctccttt |
2716577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 2723091 - 2723200
Alignment:
| Q |
130 |
ctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactgtggccatattagg |
229 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2723091 |
ctctatgctcagtctgacttagaaggaatgcaggttgagatggatgaggaagtttaacaatctcactattaagcattgaaacaactgtggccatagtagg |
2723190 |
T |
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| Q |
230 |
tctctccttt |
239 |
Q |
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|||||||||| |
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| T |
2723191 |
tctctccttt |
2723200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 2744922 - 2745031
Alignment:
| Q |
130 |
ctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactgtggccatattagg |
229 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2744922 |
ctctatgctcagtctgacttagaaggaatgcaggttgagatggatgaggaagtttaacaatctcactattaagcattgaaacaactgtggccatagtagg |
2745021 |
T |
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| Q |
230 |
tctctccttt |
239 |
Q |
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|||||||||| |
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| T |
2745022 |
tctctccttt |
2745031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 2703853 - 2703962
Alignment:
| Q |
130 |
ctctatgctcagtctgacttagaaggaatgccggttgagatggaggaggcagtttaacaatctcactattaagcattgaaacaactgtggccatattagg |
229 |
Q |
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||||||||||| ||| ||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
2703853 |
ctctatgctcaatcttgctttgaatgaatgcaggttgagatggaggaggaagtttaacaatctcactattaagcattgaaacaaatgtggccatggtagg |
2703952 |
T |
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| Q |
230 |
tctctccttt |
239 |
Q |
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|||||||||| |
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| T |
2703953 |
tctctccttt |
2703962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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