View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_low_2 (Length: 582)
Name: NF3960_low_2
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 12896803 - 12897354
Alignment:
| Q |
18 |
cgaacaaggttgaatcacaataattcataagaataatgacatccatatagatataacaagatgatgtttgtgaatgttatatcatgaaaacaagcatcat |
117 |
Q |
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| T |
12896803 |
cgaacaaggttgaatcacaataattcataagaataatgacatccatatagatgtaacaagatgatgtttgtga-tgttatatcatgaaaacgagcatcat |
12896901 |
T |
|
| Q |
118 |
ctgatttt-ctcaccatttcgtcaaagacttcatggtttttgatgaacttctgaaggttcttcaacaggaggacgaaaggaaggaacgtaatttctttgc |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
12896902 |
ctgatttttctcaccatttcgtcaaagacttcatggtttttgatgaacttctgaaggttcttcaacaggaggacgaaagggaggaacgaaatttctttgc |
12897001 |
T |
|
| Q |
217 |
atttcttggtgaaactaaaacaagctactgtagttagacataacttcattggaaactatataactggagtaatcagaggcttatttgaaaagaatgctat |
316 |
Q |
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| T |
12897002 |
atttcttggtgaaactaaaacaagctactatagttagacataacttcattggaaactatataactggagtaatcagaggcttatttgaaaagaatgctat |
12897101 |
T |
|
| Q |
317 |
caaattttgttccacaagttggcagatacccatcaaagactcagaagttgcaacagctgcatgaggtgaaaggacaacattatccaatgaaaagaagtct |
416 |
Q |
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| T |
12897102 |
caaattttgttccacaagttggcagatacccatatgtgactctaaagttaagacagctgaatgaggtgaaaggacaacattatccaatgaatagaagtct |
12897201 |
T |
|
| Q |
417 |
ttaggaacatgaggttcattctcaaacacatccaaaccagcacctccaatttcatcttcaatcaaacacttcaacaattccttttcatcaatgagagcac |
516 |
Q |
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| T |
12897202 |
ttaggaacatgaggttcattttcaaacacatccaaaccagcacctccaatctcttcttcaatcaaacacttcaacaattccttttcatcaatgagagcac |
12897301 |
T |
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| Q |
517 |
ctcttccaacattcactatgattccgccttttcctagtgccaacattacttct |
569 |
Q |
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| T |
12897302 |
ctcttccaacattcactatgattccgccttttcctagtgccaacattacttct |
12897354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 270 - 569
Target Start/End: Original strand, 12885417 - 12885716
Alignment:
| Q |
270 |
aactatataactggagtaatcagaggcttatttgaaaagaatgctatcaaattttgttccacaagttggcagatacccatcaaagactcagaagttgcaa |
369 |
Q |
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| T |
12885417 |
aactatataaccggagtaatcggagctttatttgaaaagaatgctgtcaaattttgttccacaatttggcggatacccatcaaagactcagaagttacaa |
12885516 |
T |
|
| Q |
370 |
cagctgcatgaggtgaaaggacaacattatccaatgaaaagaagtctttaggaacatgaggttcattctcaaacacatccaaaccagcacctccaatttc |
469 |
Q |
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| T |
12885517 |
cagctgcatgaggtgaaaggacaacattatccaatgaaaagaagtctttaggaacatgaggttcattctcaaacacatccaaaccagcacctccaatttc |
12885616 |
T |
|
| Q |
470 |
atcttcaatcaaacacttcaacaattccttttcatcaatgagagcacctcttccaacattcactatgattccgccttttcctagtgccaacattacttct |
569 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||| |
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| T |
12885617 |
atcttcaatcaaacacttcaacaattccttttcatcaatgagagcacctcttccaacattcactatgattcctccttttcccaatgccaacatgacttct |
12885716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 422 - 529
Target Start/End: Original strand, 12881215 - 12881322
Alignment:
| Q |
422 |
aacatgaggttcattctcaaacacatccaaaccagcacctccaatttcatcttcaatcaaacacttcaacaattccttttcatcaatgagagcacctctt |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| | ||||| || |||||||| ||| |||||||| |
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| T |
12881215 |
aacatgaggttcattctcaaacacatccaaaccagcaccagcaatttctccttccatcaaacacttgatcaattgtttctcatcaataagaccacctctt |
12881314 |
T |
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| Q |
522 |
ccaacatt |
529 |
Q |
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| T |
12881315 |
ccaacatt |
12881322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 419 - 535
Target Start/End: Complemental strand, 28453896 - 28453783
Alignment:
| Q |
419 |
aggaacatgaggttcattctcaaacacatccaaaccagcacctccaatttcatcttcaatcaaacacttcaacaattccttttcatcaatgagagcacct |
518 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||| ||||| | |||| |||||||| |||| ||| ||| |||||||| |||| | | |
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| T |
28453896 |
aggaacattaggctcattctcaaacacatccaaaccagcaccaccaatatgtccttctatcaaacaattcaccaactcc---tcatcaattagagaccat |
28453800 |
T |
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| Q |
519 |
cttccaacattcactat |
535 |
Q |
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||||||||||| ||||| |
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| T |
28453799 |
cttccaacattgactat |
28453783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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