View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_low_3 (Length: 570)
Name: NF3960_low_3
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 551
Target Start/End: Complemental strand, 48066087 - 48065564
Alignment:
| Q |
8 |
gagcagagacaagagtgttattatttgtataataatgtgaatctcattttggtatggatcatgcaattgggaagggggatatataaggtttgatcatttg |
107 |
Q |
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| T |
48066087 |
gagcagtgacaagagtgttattatttgtataataatgtgaatctcattttggtatggatcatgcaattgggaagggggatatataaggtttgatcatttg |
48065988 |
T |
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| Q |
108 |
acactctgaaatgtaaactcattaatgtcttgtttctaccacctcccaatgatttaaagcaaaccgctcaatcgtcatgaatggtcttaaattagataga |
207 |
Q |
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| T |
48065987 |
acactctgaaatgtaaactcattaatgtcttgtttctaccacctgccaatgatttaaagcaaaccgctcaatcgtcatggatggtcttaaattagataga |
48065888 |
T |
|
| Q |
208 |
agaagtggaaatatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgagtctcagtcagatttattcttcatcat |
307 |
Q |
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| T |
48065887 |
agaagtggaaatatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgactctcagtcagatttattcttcatcat |
48065788 |
T |
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| Q |
308 |
aatcacatacaattacaaacatggacaaatatttttacttcttgccagtattgcttaactggtagtagtggtatacacctgtaagtgtaacttagtcgac |
407 |
Q |
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| T |
48065787 |
aatcacatacaattacaaacatggacaaatatttttacttcttgccagtattgcttaactgg---tagtggtatacacctgtaagtgtaacttagtcgac |
48065691 |
T |
|
| Q |
408 |
aaattaaattagcaccttgccgaaacaagtacaattaggtaggtgttggaacatcaaatatattggacatttcgttttaatgcgtgtttcgttcaacagt |
507 |
Q |
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| T |
48065690 |
aaattaaattagcaccttgccgaaacaagtacaattaggtaggtgttggaacatcaaatatattggaca-----------------tttcgttcaacagt |
48065608 |
T |
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| Q |
508 |
caaattaacaaaatcacggagaatggcaaacgctacactatgca |
551 |
Q |
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| T |
48065607 |
caaattaacaaaatcacggagaatggcaaacgctacactatgca |
48065564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 189 - 309
Target Start/End: Complemental strand, 48083316 - 48083192
Alignment:
| Q |
189 |
tggtcttaaattagata--gaa--gaagtggaaatatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgagtct |
284 |
Q |
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||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48083316 |
tggtcttaaattagatatagaattgaagtgaaaacatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgactct |
48083217 |
T |
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| Q |
285 |
cagtcagatttattcttcatcataa |
309 |
Q |
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| T |
48083216 |
caatcagatttattcttcatcataa |
48083192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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