View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3960_low_8 (Length: 382)

Name: NF3960_low_8
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3960_low_8
NF3960_low_8
[»] chr8 (2 HSPs)
chr8 (1-364)||(44007256-44007620)
chr8 (13-85)||(44006400-44006472)
[»] chr4 (7 HSPs)
chr4 (138-354)||(33169315-33169526)
chr4 (13-77)||(53687719-53687783)
chr4 (8-82)||(53688526-53688600)
chr4 (1-74)||(55245977-55246049)
chr4 (13-55)||(55246556-55246598)
chr4 (13-85)||(9041889-9041961)
chr4 (29-81)||(51540644-51540696)
[»] chr7 (4 HSPs)
chr7 (3-90)||(33223180-33223267)
chr7 (14-73)||(31173687-31173747)
chr7 (8-82)||(4997140-4997214)
chr7 (13-77)||(4996434-4996497)
[»] chr6 (5 HSPs)
chr6 (8-90)||(19802545-19802627)
chr6 (14-82)||(4222767-4222834)
chr6 (13-85)||(19803215-19803288)
chr6 (39-74)||(1260010-1260045)
chr6 (13-65)||(1634928-1634979)
[»] chr1 (2 HSPs)
chr1 (8-56)||(37560769-37560817)
chr1 (26-82)||(24271360-24271416)
[»] scaffold0272 (1 HSPs)
scaffold0272 (16-82)||(8911-8976)
[»] chr2 (3 HSPs)
chr2 (1-54)||(40658307-40658360)
chr2 (33-76)||(37180899-37180942)
chr2 (51-79)||(21831117-21831145)
[»] chr5 (1 HSPs)
chr5 (39-77)||(1690401-1690439)
[»] chr3 (1 HSPs)
chr3 (13-77)||(45244076-45244140)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 44007620 - 44007256
Alignment:
Q  1 tgttttcttgagattcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggattgattcggcagtnnnnnnn 100  Q
    |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||           
T  44007620 tgtttttttgacattcaaaacatcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggattgattcggcggtaaaaaaa 44007521  T
Q  101 nctccaacggtaggtagttaactaccgtggactaactacaactttattttaatttcattttcactctctcaattcttcaaaatgtgacaaaa-caaaaca 199  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44007520 actccaacggtaggtagttaactaccgtggactaactacagctttattttaatttcattttcactctctcaattcttcaaaatgtgacaaaaacaaaaca 44007421  T
Q  200 catgtagccatctaataagaccacccacacatctcttccattttccaactcactcactttgtttcatcaccttcacatattcacatcactacacaaccac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44007420 catgtagccatctaataagaccacccacacatctcttccattttccaactcactcactttgtttcatcaccttcacatattcacatcactacacaaccac 44007321  T
Q  300 ttgttcctttcccttcccttcttcatttccctcaatcattttaccatctttttcaaatacacttt 364  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44007320 ttgttcctttcccttcccttcttcatttcccttaatcattttaccatctttttcaaatacacttt 44007256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 44006400 - 44006472
Alignment:
Q  13 attcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggattgat 85  Q
    ||||||||| ||||||||||||||  |||||||||||||||| || ||||||||||||||||| | |||||||    
T  44006400 attcaaaacttcatattgacatatgaaaatgacgtttttatcttcggcggtagttaactaccgcttgattgat 44006472  T

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Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 138 - 354
Target Start/End: Complemental strand, 33169526 - 33169315
Alignment:
Q  138 acaactttattttaatttcattttcactctctcaattcttcaaaatgtgacaaaacaaaacacatgtagccatctaataagaccacccacacatctcttc 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33169526 acaactttattttaatttcattttcactctctcaattcttcaaaatgtgacaaaacaaaacacatgtagctatctaataagaccacccacacatctcttc 33169427  T
Q  238 cattttccaactcactcactttgtttcatcaccttcacatattcacatcactacacaaccacttgttcctttcccttcccttcttcatttccctcaatca 337  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     || |||||||||||||||| |||||    
T  33169426 caatttccaactcactcactttgtttcatcaccttcacatattcacatcactacacaaccacttgttcat-----tttccttcttcatttcccttaatca 33169332  T
Q  338 ttttaccatctttttca 354  Q
    |||||||||||||||||    
T  33169331 ttttaccatctttttca 33169315  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 53687719 - 53687783
Alignment:
Q  13 attcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgtt 77  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||  |||||||||||||||||||||    
T  53687719 attcaaaacgtcatattgacacataaaaatgacatttttatctccagcggtagttaactaccgtt 53687783  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 53688600 - 53688526
Alignment:
Q  8 ttgagattcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggatt 82  Q
    |||| ||| ||||| ||||||||||| || ||||||| |||||||||| |||  |||||||||||||||||||||    
T  53688600 ttgacatttaaaacttcatattgacacattgaaatgatgtttttatccccagtagtagttaactaccgttggatt 53688526  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 55245977 - 55246049
Alignment:
Q  1 tgttttcttgagattcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactacc 74  Q
    |||||| ||||  |||||||||||||||||||| || ||||||||||||||| | |||| ||||||||||||||    
T  55245977 tgtttttttgacgttcaaaacgtcatattgacacatggaaatgacgttttta-cttcagtggtagttaactacc 55246049  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 55246598 - 55246556
Alignment:
Q  13 attcaaaacgtcatattgacatatagaaatgacgtttttatcc 55  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  55246598 attcaaaacgtcatatttacatatagaaatgacatttttatcc 55246556  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 9041889 - 9041961
Alignment:
Q  13 attcaaaacgtcatattgacatatagaaatgacgtttttatcctc-agcggtagttaactaccgttggattgat 85  Q
    ||||||||||||||||||| | || ||||||||||||||| ||||  |||||||||||||||| ||| ||||||    
T  9041889 attcaaaacgtcatattgatacatggaaatgacgttttta-cctcgggcggtagttaactaccattgaattgat 9041961  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 51540644 - 51540696
Alignment:
Q  29 tgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggat 81  Q
    ||||| || |||||||| |||||  ||||||||||||||||||||| ||||||    
T  51540644 tgacacatggaaatgacatttttgccctcagcggtagttaactaccattggat 51540696  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 33223267 - 33223180
Alignment:
Q  3 ttttcttgagattcaaaacgtcatattgacatatagaaatgacgtttttatcctcag-cggtagttaactaccgttggattgattcggc 90  Q
    |||| |||| ||||||||||||||||||||| |||||||||||  ||||| |||| | |||||||||||||||||||||||||| ||||    
T  33223267 tttttttgacattcaaaacgtcatattgacacatagaaatgac-attttaacctccgacggtagttaactaccgttggattgatccggc 33223180  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 31173747 - 31173687
Alignment:
Q  14 ttcaaaacgtcatattgacatatagaaatgacgtttttatcctc-agcggtagttaactac 73  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||||    
T  31173747 ttcaaaacgtcatattgacatataaaaatgacgtttttatcttcgagccgtagttaactac 31173687  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 4997214 - 4997140
Alignment:
Q  8 ttgagattcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggatt 82  Q
    |||| ||||||||| ||||||||||| || ||||||||||||||| |  | ||||||||||||| ||||||||||    
T  4997214 ttgacattcaaaacttcatattgacacatggaaatgacgtttttacctccggcggtagttaactgccgttggatt 4997140  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 4996434 - 4996497
Alignment:
Q  13 attcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgtt 77  Q
    ||||||||||||||||||||| ||  ||||||||||||||  ||  |||||||||||||||||||    
T  4996434 attcaaaacgtcatattgacacatgaaaatgacgtttttactct-ggcggtagttaactaccgtt 4996497  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 19802545 - 19802627
Alignment:
Q  8 ttgagattcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggattgattcggc 90  Q
    |||| ||||||||| ||||||||||| ||  |||||| ||||||| |  | ||||||||||||||||||||||||||| ||||    
T  19802545 ttgacattcaaaacatcatattgacacatgaaaatgatgtttttacctccggcggtagttaactaccgttggattgatccggc 19802627  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 4222834 - 4222767
Alignment:
Q  14 ttcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggatt 82  Q
    |||||||||||||||||||| ||  |||||||||||||| || ||||||||||||||| |||| |||||    
T  4222834 ttcaaaacgtcatattgacacatgaaaatgacgttttta-ccccagcggtagttaactgccgtgggatt 4222767  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 19803288 - 19803215
Alignment:
Q  13 attcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcgg-tagttaactaccgttggattgat 85  Q
    ||||||||||| ||||||||| ||  ||||||| |||||| || | |||| |||||||||||||||||||||||    
T  19803288 attcaaaacgtaatattgacacatgaaaatgacttttttacccccggcgggtagttaactaccgttggattgat 19803215  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 1260045 - 1260010
Alignment:
Q  39 aaatgacgtttttatcctcagcggtagttaactacc 74  Q
    |||||||||||||||||||||||||||| |||||||    
T  1260045 aaatgacgtttttatcctcagcggtagtaaactacc 1260010  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 1634979 - 1634928
Alignment:
Q  13 attcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtag 65  Q
    ||||||||||| ||||||||| || ||||||||||||||| || |||||||||    
T  1634979 attcaaaacgttatattgacacatggaaatgacgttttta-ccccagcggtag 1634928  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 37560817 - 37560769
Alignment:
Q  8 ttgagattcaaaacgtcatattgacatatagaaatgacgtttttatcct 56  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  37560817 ttgacattcaaaacgtcatattgacatattgaaatgacatttttatcct 37560769  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 24271416 - 24271360
Alignment:
Q  26 tattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggatt 82  Q
    |||||||||| | |||||| |||||||||| |||||||||||||| |||||| ||||    
T  24271416 tattgacataaataaatgatgtttttatccccagcggtagttaacaaccgttagatt 24271360  T

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Target: scaffold0272 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 8911 - 8976
Alignment:
Q  16 caaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgttggatt 82  Q
    |||||| ||||| |||||||||||||||||||||||| |  || |||||||||||||||| ||||||    
T  8911 caaaacttcataatgacatatagaaatgacgttttta-ctccaacggtagttaactaccgctggatt 8976  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40658360 - 40658307
Alignment:
Q  1 tgttttcttgagattcaaaacgtcatattgacatatagaaatgacgtttttatc 54  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||  ||||||||    
T  40658360 tgttttcttgacattcaaaacgtcatattgacacataaaaatgatctttttatc 40658307  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 37180942 - 37180899
Alignment:
Q  33 atatagaaatgacgtttttatcctcagcggtagttaactaccgt 76  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||    
T  37180942 atatagaaatgacgtttttgttctcagcggtagttaattaccgt 37180899  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 21831117 - 21831145
Alignment:
Q  51 tatcctcagcggtagttaactaccgttgg 79  Q
    |||||||||||||||||||||||||||||    
T  21831117 tatcctcagcggtagttaactaccgttgg 21831145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 1690401 - 1690439
Alignment:
Q  39 aaatgacgtttttatcctcagcggtagttaactaccgtt 77  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  1690401 aaatgacgtttttatcctcagcggcagttaacaaccgtt 1690439  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 45244140 - 45244076
Alignment:
Q  13 attcaaaacgtcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgtt 77  Q
    ||||||||| |||||||||||  |  ||||||| ||||||  ||||||||| |||||||||||||    
T  45244140 attcaaaacttcatattgacacttgtaaatgacatttttactctcagcggtggttaactaccgtt 45244076  T

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