View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3961_high_3 (Length: 582)
Name: NF3961_high_3
Description: NF3961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3961_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 5 - 524
Target Start/End: Original strand, 48694384 - 48694903
Alignment:
| Q |
5 |
cattttatactccaaaatgctcctgttgttattggccatcaggacaaagagttgcggtatcgctttatctataaccactttccaagtttgcatgaggagg |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48694384 |
cattttatactccaaaatgctcctgttgttattggccatcaggacaaagagttgcggtatcgctttatctacaaccactttccaagtttgcatgaggagg |
48694483 |
T |
|
| Q |
105 |
taatattttttgctgttgaagctcttcttggaaggtttatatgattcatgatacatcaatttactttattcatattattttctatcatctttttccagga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48694484 |
taatattttttgctgttgaagctcttcttggaaggtttatatgattcatgatacatcaatttactttattcaaattattttctatcatctttttccagga |
48694583 |
T |
|
| Q |
205 |
cataataggaaaaactgatgtcgaaatattcactggatctggtgttaaggagaaccaagattttaagagggaagttttggaaaaaggattgcctgcaaaa |
304 |
Q |
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| T |
48694584 |
cataataggaaaaactgatgtcgaaatattcactggatctggtgttaaggagaaccaagattttaagagggaagttttggaaaaaggattgcctgcaaaa |
48694683 |
T |
|
| Q |
305 |
agggaaatcacttttgagacagaactatttggatcaaagacattcttgatttatgtagaacctgtattcagcaaggcaggtgaaacaattggaatcaatt |
404 |
Q |
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| T |
48694684 |
agggaaatcacttttgagacagaactatttggatcaaagacattcttgatttatgtagaacctgtattcagcaaggcaggtgaaacaattggaatcaatt |
48694783 |
T |
|
| Q |
405 |
acatgggaatggatgtaacagatcaggtaaatgttaattgttactccctatggaatttttggaccggatacatatacttttttgcttatatttcgttcca |
504 |
Q |
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| T |
48694784 |
acatgggaatggatgtaaccgatcaggtaaatgttaattgttactccctatggaatttttggactggatacatatacttttttgcttatatttcgttcca |
48694883 |
T |
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| Q |
505 |
cagggagtattgacttctta |
524 |
Q |
| |
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|||||||||||||||||||| |
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| T |
48694884 |
cagggagtattgacttctta |
48694903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 194 - 436
Target Start/End: Complemental strand, 3455773 - 3455531
Alignment:
| Q |
194 |
tttttccaggacataataggaaaaactgatgtcgaaatattcactggatctggtgttaaggagaaccaagattttaagagggaagttttggaaaaaggat |
293 |
Q |
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|||||||||||||| ||||||||||| ||||||||||| ||||| ||| | ||||| ||||| |||||||||||||| ||||| |||| |||||| |
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| T |
3455773 |
tttttccaggacattataggaaaaacagatgtcgaaattttcacgggagcaggtgtgaaggaatctcaagattttaagagagaagtaatggagaaaggag |
3455674 |
T |
|
| Q |
294 |
tgcctgcaaaaagggaaatcacttttgagacagaactatttggatcaaagacattcttgatttatgtagaacctgtattcagcaaggcaggtgaaacaat |
393 |
Q |
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| |||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||||||||||||||| |
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| T |
3455673 |
tacctgcaaaaaaggaaataacttttgagacagaactatttggatttaagacatttttgatatatgtagaacctgtgtttagcaaggcaggtgaaacaat |
3455574 |
T |
|
| Q |
394 |
tggaatcaattacatgggaatggatgtaacagatcaggtaaat |
436 |
Q |
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|||| | || || ||||||||||| ||||||||||||||||| |
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| T |
3455573 |
tggagtaaactatatgggaatggaaataacagatcaggtaaat |
3455531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 196 - 435
Target Start/End: Complemental strand, 3480373 - 3480134
Alignment:
| Q |
196 |
tttccaggacataataggaaaaactgatgtcgaaatattcactggatctggtgttaaggagaaccaagattttaagagggaagttttggaaaaaggattg |
295 |
Q |
| |
|
|||||||||| | ||||||||||| ||||| ||||| ||||| ||| | ||||| |||||| |||||||||||||| ||||| |||| |||||| | |
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| T |
3480373 |
tttccaggacctcataggaaaaacggatgttgaaattttcacgggagcaggtgtgaaggagtctcaagattttaagagagaagtaatggagaaaggagta |
3480274 |
T |
|
| Q |
296 |
cctgcaaaaagggaaatcacttttgagacagaactatttggatcaaagacattcttgatttatgtagaacctgtattcagcaaggcaggtgaaacaattg |
395 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| | |||| ||||||||| || ||||||||||| |||||||||| |
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| T |
3480273 |
cctgcaaaaagggaaataacttttgagacagaactacttggatcaaagacatttttgttgtatgcagaacctgtgtttagcaaggcaggagaaacaattg |
3480174 |
T |
|
| Q |
396 |
gaatcaattacatgggaatggatgtaacagatcaggtaaa |
435 |
Q |
| |
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|| | || | ||||||||||| |||| ||||||||||| |
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| T |
3480173 |
gagtaaaccatatgggaatggaaataaccgatcaggtaaa |
3480134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 3480585 - 3480521
Alignment:
| Q |
44 |
caggacaaagagttgcggtatcgctttatctataaccactttccaagtttgcatgaggaggtaat |
108 |
Q |
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| T |
3480585 |
caggacaaagagttgcggtatcgctttatctataatcattttccaagtttacaagaggaggtaat |
3480521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 3455980 - 3455916
Alignment:
| Q |
44 |
caggacaaagagttgcggtatcgctttatctataaccactttccaagtttgcatgaggaggtaat |
108 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| || ||||||||||| || || |||||||| |
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| T |
3455980 |
caggacaaagagttgcgctatcgttttatctataatcattttccaagtttacaagaagaggtaat |
3455916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 3456429 - 3456387
Alignment:
| Q |
5 |
cattttatactccaaaatgctcctgttgttattggccatcagg |
47 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
3456429 |
cattttatacttcaaaatgcacctgttgttattggccatcagg |
3456387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 3480816 - 3480774
Alignment:
| Q |
5 |
cattttatactccaaaatgctcctgttgttattggccatcagg |
47 |
Q |
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||||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
3480816 |
cattttatacttcaaaatgcacctgttgttataggccatcagg |
3480774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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