View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3961_high_4 (Length: 409)
Name: NF3961_high_4
Description: NF3961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3961_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 53716174 - 53715791
Alignment:
| Q |
8 |
aggtgttaaaatcttgg-tcggaatataaggtgtgattatgtatttacttagaatttgagtcgtgcttaactcaaatttacaaatggttttaagataatg |
106 |
Q |
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| T |
53716174 |
aggtgttaaaatcttgggtcggaatataaggtgtgattatgtatttacttagaatttgagtcgtgcttaactcaaatttacaaatggttttaagataatg |
53716075 |
T |
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| Q |
107 |
annnnnnnaacttataaatatattggtaagtcgtatctcatacaatgtgagactcttaacacatccatatgtccagaattagccaatcgatatgttatcc |
206 |
Q |
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| T |
53716074 |
atttttttaacttataaatatattggtatgtcgtatctcatataatgtgagactcttaacacatccacatgtccagaattagtcaatcagtgtgttatcc |
53715975 |
T |
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| Q |
207 |
gagtcgtcggataacacatccagaactagacatatggtgtgtgacccaagtggcctgaagaagtcttgaacaagaaagaagtagaccataaatcacttcc |
306 |
Q |
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| T |
53715974 |
gagtcgttggataacacatccaaaactagacatatggtgtgtgacccaagtggcctgaagaagtcttgaacaagaaagaagtagacaataaatcacttcc |
53715875 |
T |
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| Q |
307 |
ttctctccaacactcccaaaataattcttaaccttcactcattttctttttcttattaaagatatggaccggggtggaggaatg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53715874 |
ttctctccaacactcccaaaataattcttaaccttcactctttttctttttcttattaaagatatggaccggggtggaggaatg |
53715791 |
T |
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