View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3961_high_7 (Length: 301)
Name: NF3961_high_7
Description: NF3961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3961_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 31186553 - 31186268
Alignment:
| Q |
1 |
tgtcccgaaaactgtacgagtcactgtctttgcaagaaagacacgagcaatggatggcagaacatggcaaagtgtacgaagatgctattgagaaagaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31186553 |
tgtcccgaaaactgtacgagtcactgtctttacaagaaagacacgaacaatggatgacagaacatggcaaagtgtacgaagatgctattgagaaagaaaa |
31186454 |
T |
|
| Q |
101 |
acgtttcatgatattcaaagacaatgttgagttcattgaatcattcaatgcagctgataataaaccttacaagctaagtgttaatcacctagctgatttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31186453 |
acgtttcatgatattcaaagacaatgttgagttcattgaatcattcaatgcagctgataatcaaccttacaagctaagtgttaatcacctagctgatttg |
31186354 |
T |
|
| Q |
201 |
actcttgatgaatttaaggcttcccgtaatggttacaagaagattgatcgtgagtttactacaacatcatttaagtatgaaaatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31186353 |
actcttgatgaatttaaggcttcccgtaatggttacaagaagattgatcgtgagtttactacaacatcatttaagtatgaaaatgt |
31186268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 31195200 - 31194908
Alignment:
| Q |
1 |
tgtcccgaaaactgtacgagtcactgtctttgcaagaaagacacgagcaatggatggcagaacatggcaaagtgtacgaagatgctattgagaaagaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||| | ||||| ||||||||||||||||| |||||| ||||| |||| ||| |||| |||||||||||||||| ||||| |
|
|
| T |
31195200 |
tgtcccgaaaactgtatgagtcgccatctttacaagaaagacacgagcagtggatgtcagaatatggaaaattgtataaagatgctattgagaaggaaaa |
31195101 |
T |
|
| Q |
101 |
acgtttcatgatattcaaagacaatgttgagttcattgaatcattcaatgcagctgataataaaccttacaagctaagtgttaatcacctagctgatttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31195100 |
acgtttcatgatattcaaagacaatgttgagttcattgaatcattcaatgcagctgacaacaaaccttacaagctaagtgttaatcacctagctgatttg |
31195001 |
T |
|
| Q |
201 |
actcttgatgaatttaaggcttcccgtaatggttacaagaagattgatcgtgagtttactacaacatcatttaagtatgaaaatgtctctgct |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31195000 |
actcttgatgaatttaaggcttcccgtaatggttacaagaagattgatcgtgagtttgctacaacatcatttaagtatgaaaatgtcactgct |
31194908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University