View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3961_low_11 (Length: 244)
Name: NF3961_low_11
Description: NF3961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3961_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 18675569 - 18675346
Alignment:
| Q |
1 |
tttccttcccctccctctaaactcgcaacaacgccttgtagcgggtactcttaaattttattataatgaagcctataataattttattaatttctcaaac |
100 |
Q |
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| T |
18675569 |
tttccttcctctccctctaaactcgcaacaaagccttgtagcgggtactcttaaattt-attataatgaagcctataataattttattaatttctcaaac |
18675471 |
T |
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| Q |
101 |
ataatgttttctcaagctaatctttgaaattggcacaacagcattcgactcccaaattttgtggggtgcattctcctttaacaaagccttctttcttgca |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||| |
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| T |
18675470 |
ataatgttttc-caagctaatctttgaaattggcacaacagcattcgactccaaaattttgtggggtgcattctcctttaacaaagccctgtcgcttgca |
18675372 |
T |
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| Q |
201 |
tgctgtatcacaaggttcagcaaatg |
226 |
Q |
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| T |
18675371 |
tgctgtatcacaaggttcagcaaatg |
18675346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 18671279 - 18671400
Alignment:
| Q |
59 |
tattataatgaagcctataataattttattaatttctcaaacataatgttttctcaagctaatctttgaaattggcacaacagcattcga---ctcccaa |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
18671279 |
tattataatgaagcctataataattttattaatttctcaaacataatgttttc-aaagctaatctttataattgg--caacagcattcgatttctcccaa |
18671375 |
T |
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| Q |
156 |
attttgtggggtgcattctccttta |
180 |
Q |
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| T |
18671376 |
atctcgtggggtgcattctccttta |
18671400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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