View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3961_low_2 (Length: 646)
Name: NF3961_low_2
Description: NF3961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3961_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 567; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 14 - 628
Target Start/End: Original strand, 11645025 - 11645639
Alignment:
| Q |
14 |
tacttcacaccatcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttg |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11645025 |
tacttcacaccatcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaattccaatcaaaccatgatctttcttctaattcttg |
11645124 |
T |
|
| Q |
114 |
tatcaactttttgtctaagcattgaagtagcattaggacaactcaataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagc |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645125 |
tatcaactttttgtctaagcattgaagtagcatcaggacaactcaataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagc |
11645224 |
T |
|
| Q |
214 |
atcagaatgtgacaacaaatttcactccgatgacacacttattgtagcattatcaactgaatatttcaaccatagagagaggtgtttcaaagaaattact |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
11645225 |
atcagaatgtgacaacaaatttcactccgatgacacacttattgtagcattatcaactgtgtatttcaaccataaagagaggtgtttcaaagaaattact |
11645324 |
T |
|
| Q |
314 |
atttttggtaatggtagaagcgtgaatgccatggttgttgatgagtgtgcgtgtggaaagaatattgttgatggttcttctgctgtttggaaggctttgg |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11645325 |
atttttggtaatggtagaagcgtgaatgccatggttgttgatgagtgtaagtgtggaaacaatattgttgatggttcttctgctgtttggaaggctttgg |
11645424 |
T |
|
| Q |
414 |
gtgtgcctgaaaaagagggtgaaatgatcattttttggggagatacttgatgcaattaaaggagaatttattatatctatgtttgtgtgttaatgtgtat |
513 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645425 |
gtgtgcctgaaaaagagggtgaaatggacattttttggggagatgcttgatgcaattaaaggagaatttattatatctatgtttgtgtgttaatgtgtat |
11645524 |
T |
|
| Q |
514 |
gtatttttatcataatacatacatatatcaagtataacagacacagttttctcagttaaaataaaggtacaaatatacattaaaatgtcacgaaaaagtt |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11645525 |
gtatttttatcataatacatacatatatcaagtataacagacacagttttctcagttaaaataacggtacaaatatacattaaaatgtcacgaaaaagtt |
11645624 |
T |
|
| Q |
614 |
ttaatattagagctt |
628 |
Q |
| |
|
||||||||||||||| |
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| T |
11645625 |
ttaatattagagctt |
11645639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 159 - 493
Target Start/End: Original strand, 11622095 - 11622444
Alignment:
| Q |
159 |
ataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgtgacaacaaatttcactccgatgacacacttattgt |
258 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || | |||||| |||| |
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|
| T |
11622095 |
ataaagcaatcttaacattgaacagctttgaaaaaggtggagatggaggagcaccatcagaatgtgacaacaagtttcactctgacaagacacttgttgt |
11622194 |
T |
|
| Q |
259 |
agcattatcaactgaatatttcaaccatagagagaggtgtttcaaagaaattactatttttggtaatggtagaagcgtgaatgccatggttgttgatgag |
358 |
Q |
| |
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||||||||||| || | |||||||||| | |||||||||| ||||| |||||||| ||||||||||||| ||| || ||||||| ||||||||||||| |
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|
| T |
11622195 |
agcattatcaagtgctttgttcaaccataaaaagaggtgtttgaaagagattactatatttggtaatggtaaaagggttaatgccaaggttgttgatgag |
11622294 |
T |
|
| Q |
359 |
tgt------------gcgtgtggaaagaatattgttgatggttcttctgctgtttggaaggctttgggtgtgcctg-aaaaaga--gggtgaaatgatca |
443 |
Q |
| |
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||| | |||| || |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| || |
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|
| T |
11622295 |
tgtgattcaagtaaagggtgtaagaacaatattgttgatggttctgctgctgtttggaaggctttgggtgtgcctgaaaaaagaaggggtgaaatgagca |
11622394 |
T |
|
| Q |
444 |
ttttttggggagatacttgatgcaattaaaggagaatttattatatctat |
493 |
Q |
| |
|
|||| ||| |||| |||||||||| |||| ||||||| ||||||||||| |
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|
| T |
11622395 |
ttttctggtcagatgcttgatgcaaataaatgagaattaattatatctat |
11622444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 159 - 503
Target Start/End: Original strand, 11640658 - 11641017
Alignment:
| Q |
159 |
ataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgtgacaacaaatttcactccgatgacacacttattgt |
258 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| || | |||||| |||| |
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|
| T |
11640658 |
ataaagcaatcttaacattgaacagctttgaaaaaggtggagatggaggaggaccatcagaatgtgacaacaagtttcactctgacaagacacttgttgt |
11640757 |
T |
|
| Q |
259 |
agcattatcaactgaatatttcaaccatagagagaggtgtttcaaagaaattactatttttggtaatggtagaagcgtgaatgccatggttgttgatgag |
358 |
Q |
| |
|
|||||||||||||| | |||||||| | |||||||| | ||||| |||||||| ||||||||||||| ||| || ||||||| ||||||||||||| |
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|
| T |
11640758 |
agcattatcaactgttttgttcaaccacaagaagaggtgtctgaaagagattactatatttggtaatggtaaaagggttaatgccaaggttgttgatgag |
11640857 |
T |
|
| Q |
359 |
tgt------------gcgtgtggaaagaatattgttgatggttcttctgctgtttggaaggctttgggtgtgcctgaaaaaga----gggtgaaatgatc |
442 |
Q |
| |
|
||| | |||| || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| | |
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|
| T |
11640858 |
tgtgattcaagtaaagggtgtaagaacaatattgttgatggttctgctgctgtttggaaggctttgggtgtgcct-aaaaagaaaaggggtgaaatggac |
11640956 |
T |
|
| Q |
443 |
attttttggggagatacttgatgcaattaaaggagaatttattatatctatgtttgtgtgt |
503 |
Q |
| |
|
||||| ||| |||| ||||||||||| ||| | ||||| ||||||| |||||| |||||| |
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|
| T |
11640957 |
attttctggtcagatgcttgatgcaatcaaatgtgaattgattatatatatgttagtgtgt |
11641017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 11654443 - 11654569
Alignment:
| Q |
14 |
tacttcacaccatcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttg |
113 |
Q |
| |
|
|||||||||||||| || |||||| ||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
11654443 |
tacttcacaccatcgttaagaaaacaaaataaaaataaaatgaagggtgtcaaaattagtttaaatttcattcaaaccataatctttcttctaattcttg |
11654542 |
T |
|
| Q |
114 |
tatcaactttttgtctaagcattgaag |
140 |
Q |
| |
|
|||||||||| || ||||||||||||| |
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|
| T |
11654543 |
tatcaactttatgcctaagcattgaag |
11654569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 161 - 362
Target Start/End: Original strand, 11654713 - 11654914
Alignment:
| Q |
161 |
aaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgtgacaacaaatttcactccgatgacacacttattgtag |
260 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || | |||| | |||||| |
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|
| T |
11654713 |
aaagcaaccctaacactgaacagctttgaaaaaggtggagatggaggagcaccatcagaatgtgacaacaagtttcactctgacaaaacacctgttgtag |
11654812 |
T |
|
| Q |
261 |
cattatcaactgaatatttcaaccatagagagaggtgtttcaaagaaattactatttttggtaatggtagaagcgtgaatgccatggttgttgatgagtg |
360 |
Q |
| |
|
|||||||||||| | |||||| ||| |||||||||| ||| | |||||||| ||||| ||||||| || || ||||| ||||||||||||||||| |
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|
| T |
11654813 |
cattatcaactggttggttcaacaataataagaggtgtttgaaaaagattactatatttggaaatggtaaaaaggttaatgctatggttgttgatgagtg |
11654912 |
T |
|
| Q |
361 |
tg |
362 |
Q |
| |
|
|| |
|
|
| T |
11654913 |
tg |
11654914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 11621925 - 11622046
Alignment:
| Q |
15 |
acttcacaccatcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttgt |
114 |
Q |
| |
|
|||||||||||||||||| || | ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||| ||||| |
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| T |
11621925 |
acttcacaccatcattgaaaata-aaaat---aataaaatgaagggtgtcaaaattagttcaaatttcattcaaaccatggtcattcttctaatccttgt |
11622020 |
T |
|
| Q |
115 |
atcaactttttgtctaagcattgaag |
140 |
Q |
| |
|
||||||||| || ||||||||||| |
|
|
| T |
11622021 |
atcaactttgtgctcaagcattgaag |
11622046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 374 - 513
Target Start/End: Original strand, 11654968 - 11655105
Alignment:
| Q |
374 |
aatattgttgatggttcttctgctgtttggaaggctttgggtgtgcctgaaaaaga---gggtgaaatgatcattttttggggagatacttgatgcaatt |
470 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||| |
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|
| T |
11654968 |
aatattgttgatgcttctgctgctgtttggaaggctttgggtgtgcctgaaaaagattggggtgaaatggaagttttctggtcagatacttgatgcaat- |
11655066 |
T |
|
| Q |
471 |
aaaggagaatttattatatctatgtttgtgtgttaatgtgtat |
513 |
Q |
| |
|
|| |||| ||||||||||| ||||||||||| ||||||| |
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|
| T |
11655067 |
----gaaaattaattatatctatatttgtgtgttagtgtgtat |
11655105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 11640516 - 11640609
Alignment:
| Q |
47 |
aataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttgtatcaactttttgtctaagcattgaag |
140 |
Q |
| |
|
||||||||||||||||||||| | ||||||| || || |||||| |||||| ||||| |||| |||||||||||||| || ||||||||||| |
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|
| T |
11640516 |
aataaaatgaagggtgtcaaaatgagttcaagttccattcaaacaatgatcattcttgtaatccttgtatcaactttgtgctcaagcattgaag |
11640609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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