View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3961_low_5 (Length: 331)
Name: NF3961_low_5
Description: NF3961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3961_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 18676260 - 18676001
Alignment:
| Q |
14 |
aggttagaggttaaagcaaaggacttgaacacatttaatattgagaacatgataaattctaagtaatgagatggagcttataggtgatgaacgttttaag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18676260 |
aggttagaggttaaagcaaaggacttgaacacacttaatattgagaacatgataaattctaagtaatgag---gagcttataggtgatgaacgttttaag |
18676164 |
T |
|
| Q |
114 |
aagtcaaaccttagaatggacataaaaaagttgtgttgtattaaaaattgaatgagtcggtaatgtttatacttttt--------ataggttaattttct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
18676163 |
aagtcaaaccttagaatggacataaaaaagttgtgttgtattaaaaattaaatgagtcggtaatgtttatacattttattcgtaaataggttaattttct |
18676064 |
T |
|
| Q |
206 |
tgggtcgaatttctccaattttgtgtgtttttgctcagattcgtctagttttttcattccttt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |
|
|
| T |
18676063 |
tgggtcgaatttctccaattttgtgtgtttttgctcatatttatctagttttttcgttccttt |
18676001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 18670684 - 18670783
Alignment:
| Q |
135 |
ataaaaaagttgtgttgtattaaaaattgaatgagtcggtaatgtttatactttttat--------aggttaattttcttgggtcgaatttctccaattt |
226 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18670684 |
ataaaaaagttgtattgtatt-----ttgaatgaatcggtaatgtttatactttttatttgtaaataggttaattttcttgggtcgaatttctccaattt |
18670778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 18670161 - 18670201
Alignment:
| Q |
20 |
gaggttaaagcaaaggacttgaacacatttaatattgagaa |
60 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18670161 |
gaggttaaagcaaaggacttgaacacacttaatattgagaa |
18670201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University