View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3961_low_8 (Length: 279)
Name: NF3961_low_8
Description: NF3961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3961_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 13087392 - 13087661
Alignment:
| Q |
1 |
catgtagtaataatcattatcatttgtttggattaaacaatactcacattattacatccaaaaaacctcactccattttgataggagccagatccaatac |
100 |
Q |
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| T |
13087392 |
catgaagtaataaccattatcatttgtttggattaaacaatactcacattattacatccaaaaaacctcactccattttgataggagccagatccaatac |
13087491 |
T |
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| Q |
101 |
gaccttattgaaacctatgatttgtaatttacattatcgtaagtttttaattttatatttgtttttgttgttaatgatg------atgaatgcaaatagg |
194 |
Q |
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| T |
13087492 |
gaccttattgaaacgtatgatttgtactttacattatcgtaagtttttaattttatattcgtttttgttgttaatgatgatgaatatgaatgcaaatagg |
13087591 |
T |
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| Q |
195 |
agtgcgtatacacgctatatgtaaagactggatcaatcatcaaaggaggaacagattcaaaaatcagcat |
264 |
Q |
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| T |
13087592 |
agtgcgtatacacaatatatgtaaagactggatcaatcatcaaaggtggaacagattcgaaaatcagcat |
13087661 |
T |
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