View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3961_low_9 (Length: 253)
Name: NF3961_low_9
Description: NF3961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3961_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12200244 - 12200009
Alignment:
| Q |
1 |
tgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
12200244 |
tgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatggaaatagtaacc |
12200145 |
T |
|
| Q |
101 |
tctgtgaagcagaaaattatggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||| |
|
|
| T |
12200144 |
tctgtgaagcagaaaattatggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagaacgaatcccaacagtaggtggagttcttgaa |
12200045 |
T |
|
| Q |
201 |
attaacacaattcttgcggaggaaacatcaacatgc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12200044 |
attaacacaattcttgcggaggaaacatcaacatgc |
12200009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12444672 - 12444437
Alignment:
| Q |
1 |
tgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
12444672 |
tgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatggaaatagtaacc |
12444573 |
T |
|
| Q |
101 |
tctgtgaagcagaaaattatggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||| |
|
|
| T |
12444572 |
tctgtgaagcagaaaattatggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagaacgaatcccaacagtaggtggagttcttgaa |
12444473 |
T |
|
| Q |
201 |
attaacacaattcttgcggaggaaacatcaacatgc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12444472 |
attaacacaattcttgcggaggaaacatcaacatgc |
12444437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12195237 - 12195004
Alignment:
| Q |
1 |
tgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||| | ||| ||||||||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
12195237 |
tgtgaaatctagaggatggattccatacgtagaggtttgtcaaacaattcaataatataaaccctctgcacgaacctttaatttcataaaaaaa-taacc |
12195139 |
T |
|
| Q |
101 |
tctgtgaagcagaaaattatggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaa |
200 |
Q |
| |
|
| | |||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| || || ||| | |||||||||| |
|
|
| T |
12195138 |
ttttggaagtagaaaactatggtccagcgaaacagaatcatggttaatggatgtttcaaaatctataaagcgaatttcagcaagaggtcgagttcttgat |
12195039 |
T |
|
| Q |
201 |
attaacacaattcttgcggaggaaacatcaacatg |
235 |
Q |
| |
|
|| |||||||| |||| | ||||||||||||||| |
|
|
| T |
12195038 |
atggacacaatttttgctgcggaaacatcaacatg |
12195004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12439665 - 12439432
Alignment:
| Q |
1 |
tgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||| | ||| ||||||||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
12439665 |
tgtgaaatctagaggatggattccatacgtagaggtttgtcaaacaattcaataatataaaccctctgcacgaacctttaatttcataaaaaaa-taacc |
12439567 |
T |
|
| Q |
101 |
tctgtgaagcagaaaattatggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaa |
200 |
Q |
| |
|
| | |||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| || || ||| | |||||||||| |
|
|
| T |
12439566 |
ttttggaagtagaaaactatggtccagcgaaacagaatcatggttaatggatgtttcaaaatctataaagcgaatttcagcaagaggtcgagttcttgat |
12439467 |
T |
|
| Q |
201 |
attaacacaattcttgcggaggaaacatcaacatg |
235 |
Q |
| |
|
|| |||||||| |||| | ||||||||||||||| |
|
|
| T |
12439466 |
atggacacaatttttgctgcggaaacatcaacatg |
12439432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 45372251 - 45372289
Alignment:
| Q |
48 |
tgcaagaatataaaccctctgcatgaacctttaatttca |
86 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
45372251 |
tgcaaaaatataaaccctctacatgaacctttaatttca |
45372289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 7877653 - 7877581
Alignment:
| Q |
14 |
ggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttca |
86 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||| ||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
7877653 |
ggatggattccatatgtagatgattggatgacagtacaaaagtataaaccctctgcatgaacctctaatttca |
7877581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 50250938 - 50251010
Alignment:
| Q |
14 |
ggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttca |
86 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| || |||||||| ||||| |||||||||||||||||| |
|
|
| T |
50250938 |
ggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaatttca |
50251010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University