View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3962_high_11 (Length: 392)

Name: NF3962_high_11
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3962_high_11
NF3962_high_11
[»] chr4 (26 HSPs)
chr4 (32-291)||(40390887-40391146)
chr4 (32-291)||(15025774-15026033)
chr4 (32-266)||(6449606-6449841)
chr4 (81-270)||(11672436-11672625)
chr4 (125-291)||(48282800-48282962)
chr4 (32-291)||(31049886-31050146)
chr4 (33-292)||(22593194-22593454)
chr4 (32-227)||(15882103-15882302)
chr4 (32-166)||(33609940-33610076)
chr4 (32-230)||(38377805-38377992)
chr4 (166-272)||(52123607-52123713)
chr4 (163-236)||(10574064-10574137)
chr4 (102-270)||(784019-784187)
chr4 (82-139)||(47472233-47472290)
chr4 (116-204)||(37057276-37057364)
chr4 (116-253)||(23410327-23410468)
chr4 (116-202)||(20403240-20403328)
chr4 (33-77)||(43914041-43914086)
chr4 (32-139)||(10573949-10574057)
chr4 (231-291)||(47472376-47472435)
chr4 (197-291)||(43914092-43914184)
chr4 (189-291)||(35414587-35414688)
chr4 (231-292)||(24367821-24367881)
chr4 (231-292)||(42972665-42972725)
chr4 (116-228)||(43710920-43711033)
chr4 (164-212)||(1162021-1162068)
[»] chr7 (20 HSPs)
chr7 (109-351)||(25411399-25411638)
chr7 (27-291)||(27567575-27567842)
chr7 (87-291)||(13009275-13009480)
chr7 (42-291)||(34471230-34471483)
chr7 (43-119)||(25412033-25412109)
chr7 (32-289)||(20132051-20132309)
chr7 (27-292)||(30851546-30851811)
chr7 (32-291)||(11297755-11298014)
chr7 (56-272)||(28098554-28098770)
chr7 (82-206)||(25067700-25067825)
chr7 (174-270)||(30851828-30851924)
chr7 (143-227)||(48696448-48696532)
chr7 (67-203)||(12925246-12925383)
chr7 (30-121)||(21367165-21367257)
chr7 (32-106)||(28555278-28555353)
chr7 (66-137)||(38487352-38487423)
chr7 (64-151)||(40751682-40751769)
chr7 (64-125)||(7379097-7379158)
chr7 (83-132)||(39596814-39596863)
chr7 (187-291)||(22485083-22485185)
[»] chr5 (28 HSPs)
chr5 (32-270)||(19343549-19343789)
chr5 (63-289)||(16089714-16089940)
chr5 (34-273)||(26724110-26724352)
chr5 (71-291)||(5459049-5459268)
chr5 (114-290)||(15069998-15070175)
chr5 (32-180)||(39058478-39058628)
chr5 (182-292)||(1298841-1298952)
chr5 (83-291)||(38948572-38948779)
chr5 (63-248)||(36235783-36235969)
chr5 (33-206)||(5159472-5159647)
chr5 (33-230)||(38607294-38607494)
chr5 (69-291)||(39125724-39125942)
chr5 (217-291)||(2298903-2298976)
chr5 (34-202)||(14820414-14820584)
chr5 (186-291)||(39057093-39057197)
chr5 (208-291)||(35270848-35270929)
chr5 (53-114)||(2160369-2160430)
chr5 (53-114)||(41635866-41635927)
chr5 (217-291)||(35529755-35529827)
chr5 (53-114)||(3137148-3137209)
chr5 (162-211)||(34005654-34005703)
chr5 (37-291)||(22860875-22861120)
chr5 (123-166)||(30403604-30403647)
chr5 (156-205)||(6502289-6502339)
chr5 (176-292)||(458495-458611)
chr5 (33-106)||(3746672-3746745)
chr5 (186-251)||(3746838-3746902)
chr5 (233-290)||(14820528-14820584)
[»] chr3 (20 HSPs)
chr3 (32-291)||(34359328-34359589)
chr3 (33-291)||(50334544-50334805)
chr3 (32-272)||(44446781-44447023)
chr3 (32-291)||(39340768-39341027)
chr3 (83-259)||(28769448-28769625)
chr3 (32-291)||(20314885-20315143)
chr3 (116-291)||(44648123-44648296)
chr3 (32-291)||(20336778-20337034)
chr3 (162-291)||(52423123-52423252)
chr3 (56-286)||(17268853-17269084)
chr3 (53-114)||(23565270-23565331)
chr3 (80-230)||(38673254-38673406)
chr3 (87-151)||(16876437-16876501)
chr3 (85-204)||(22853369-22853489)
chr3 (182-292)||(41695496-41695605)
chr3 (83-194)||(45743779-45743891)
chr3 (39-106)||(52423012-52423080)
chr3 (81-128)||(13899511-13899558)
chr3 (32-94)||(16876079-16876140)
chr3 (64-124)||(18085356-18085416)
[»] chr8 (31 HSPs)
chr8 (32-266)||(12596851-12597087)
chr8 (56-291)||(10467394-10467630)
chr8 (27-291)||(26938777-26939039)
chr8 (27-291)||(39344575-39344840)
chr8 (32-291)||(42023897-42024156)
chr8 (32-236)||(17219668-17219877)
chr8 (33-291)||(8026015-8026273)
chr8 (32-206)||(24916034-24916208)
chr8 (81-235)||(32796980-32797135)
chr8 (32-227)||(17153535-17153735)
chr8 (67-227)||(33038248-33038408)
chr8 (156-291)||(35054941-35055075)
chr8 (134-283)||(16483868-16484017)
chr8 (36-140)||(16483745-16483849)
chr8 (32-227)||(17156948-17157148)
chr8 (32-291)||(24292091-24292351)
chr8 (227-291)||(26938539-26938602)
chr8 (32-140)||(9226680-9226788)
chr8 (34-140)||(26938666-26938773)
chr8 (127-251)||(33695214-33695339)
chr8 (53-114)||(35865889-35865950)
chr8 (56-172)||(15966448-15966564)
chr8 (53-112)||(41828013-41828072)
chr8 (241-291)||(2827176-2827225)
chr8 (233-291)||(26938976-26939033)
chr8 (225-267)||(27546031-27546073)
chr8 (238-291)||(2415069-2415121)
chr8 (238-291)||(24292298-24292350)
chr8 (233-290)||(26938717-26938773)
chr8 (238-290)||(8052207-8052259)
chr8 (170-202)||(12133654-12133686)
[»] scaffold0233 (1 HSPs)
scaffold0233 (32-291)||(16835-17094)
[»] chr2 (23 HSPs)
chr2 (32-251)||(39293061-39293281)
chr2 (56-291)||(27694425-27694660)
chr2 (27-290)||(34904003-34904264)
chr2 (31-291)||(8794573-8794828)
chr2 (56-291)||(10077627-10077860)
chr2 (32-272)||(31994652-31994894)
chr2 (32-291)||(24490460-24490723)
chr2 (32-266)||(29242495-29242732)
chr2 (32-252)||(35954222-35954444)
chr2 (71-240)||(6191127-6191296)
chr2 (32-230)||(30640995-30641196)
chr2 (56-212)||(855587-855749)
chr2 (171-273)||(947162-947265)
chr2 (66-206)||(434515-434657)
chr2 (53-114)||(41577437-41577498)
chr2 (32-112)||(43910161-43910242)
chr2 (32-94)||(37284290-37284353)
chr2 (225-292)||(1072058-1072124)
chr2 (35-205)||(36773985-36774162)
chr2 (233-291)||(29242674-29242731)
chr2 (53-114)||(10743064-10743125)
chr2 (231-267)||(6191320-6191356)
chr2 (64-140)||(30632599-30632675)
[»] chr1 (21 HSPs)
chr1 (32-290)||(16545322-16545580)
chr1 (32-284)||(20985925-20986179)
chr1 (27-291)||(33752871-33753135)
chr1 (64-291)||(13392840-13393066)
chr1 (37-291)||(29307513-29307753)
chr1 (58-291)||(29102861-29103099)
chr1 (70-267)||(3891482-3891676)
chr1 (33-159)||(1444962-1445088)
chr1 (67-195)||(50919286-50919415)
chr1 (53-114)||(14941093-14941154)
chr1 (53-114)||(14951100-14951161)
chr1 (53-114)||(14955341-14955402)
chr1 (190-291)||(23230794-23230894)
chr1 (186-273)||(35218154-35218241)
chr1 (64-125)||(15800839-15800900)
chr1 (35-150)||(9312592-9312708)
chr1 (186-257)||(35217918-35217988)
chr1 (217-272)||(50919220-50919275)
chr1 (142-251)||(23278534-23278642)
chr1 (32-151)||(25506593-25506711)
chr1 (125-204)||(37470903-37470983)
[»] scaffold0005 (1 HSPs)
scaffold0005 (63-291)||(253657-253884)
[»] chr6 (25 HSPs)
chr6 (32-291)||(24672267-24672524)
chr6 (32-270)||(17957027-17957267)
chr6 (32-273)||(6197808-6198050)
chr6 (66-267)||(3335920-3336122)
chr6 (27-291)||(3807061-3807320)
chr6 (126-266)||(17157973-17158114)
chr6 (27-291)||(30465068-30465332)
chr6 (32-180)||(10516591-10516740)
chr6 (33-139)||(12611793-12611900)
chr6 (34-140)||(4405837-4405943)
chr6 (174-292)||(10313448-10313565)
chr6 (32-140)||(25042896-25043004)
chr6 (163-291)||(35187760-35187886)
chr6 (177-286)||(4408911-4409019)
chr6 (174-291)||(5644604-5644720)
chr6 (159-291)||(12338919-12339050)
chr6 (214-270)||(30465349-30465405)
chr6 (56-130)||(4409526-4409600)
chr6 (56-166)||(10311660-10311770)
chr6 (114-270)||(4254469-4254625)
chr6 (53-114)||(15065419-15065480)
chr6 (217-251)||(25042783-25042817)
chr6 (193-291)||(34187624-34187720)
chr6 (231-291)||(1277730-1277790)
chr6 (53-114)||(15326449-15326510)
[»] scaffold0020 (1 HSPs)
scaffold0020 (83-291)||(152081-152289)
[»] scaffold0478 (2 HSPs)
scaffold0478 (32-227)||(3219-3418)
scaffold0478 (32-140)||(8597-8706)
[»] scaffold0036 (1 HSPs)
scaffold0036 (88-291)||(48333-48540)
[»] scaffold0720 (1 HSPs)
scaffold0720 (32-230)||(5440-5636)
[»] scaffold1911 (1 HSPs)
scaffold1911 (56-227)||(3-179)
[»] scaffold0416 (1 HSPs)
scaffold0416 (218-291)||(15067-15139)
[»] scaffold0407 (2 HSPs)
scaffold0407 (215-292)||(1478-1554)
scaffold0407 (215-292)||(7944-8020)
[»] scaffold0066 (1 HSPs)
scaffold0066 (215-292)||(14921-14996)
[»] scaffold0264 (1 HSPs)
scaffold0264 (56-139)||(19789-19872)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 32 - 291
Target Start/End: Original strand, 40390887 - 40391146
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| ||| ||||||| |||||||   |||||||||||||| || |||||||| |||| || | |||||||||||||    
T  40390887 gttaaatatgtttttagtccctacaaaatcatgagttttcaagtttagttcctataaaattttaatgataattttagtcctccata-tattgtagtttgt 40390985  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    ||||||||||  |||||| || |||||||||||||| || ||| ||||||||||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  40390986 aagaatagtctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataa 40391085  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |   |||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||||||    
T  40391086 aaaatttgtagggactaaacttaaaaacttgtaattttata-gggactaaaaacatatttaa 40391146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 32 - 291
Target Start/End: Original strand, 15025774 - 15026033
Alignment:
Q  32 gttaaatatattttt-agtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttg 129  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||||||   | |||||||||||| ||||||||||||||||  |||||||| |||||||    
T  15025774 gttaaatatattttttagtccctacaaaatcacgagttattaagtttagttcttataaaattttaatggtaattttaatcctctaaaatattatagtttg 15025873  T
Q  130 taagaatagtcaatattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    | | |||||||  |||||| || || ||||||||||||| |||  |||||| ||| |||||||||| ||||||||   ||||| || ||||| |||||||    
T  15025874 tgataatagtccctattttgaaaactttttacaaaaatgtata-ctttagtcctccaaaatagtccttataaaatataaatagggactaaaaatgaataa 15025972  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    | |||||||||||||||||||| |||| || ||||||| || | ||||||||||||||||||    
T  15025973 aatttttgtagggactaaacttaaaagtttgtaattttgta-gtgactaaaaacatatttaa 15026033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 6449841 - 6449606
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    |||||||||||||||| | |||||||| ||||||||||| ||||||||  || ||||||||||| || |||||||| |  || | |||| ||||||||||    
T  6449841 gttaaatatatttttaattcctacaaaatcacgagttttcaagtttaatgcccataaaattttaatgataattttagttttttataataatgtagtttgt 6449742  T
Q  131 aagaatagtcaatattttaaatacattttacaaaa-atggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    || |||||||  ||||||||| || |||| ||||| ||||| | |||||||  |  |||||||||  |||||| | | |||| ||| |||||||||||||    
T  6449741 aaaaatagtccctattttaaaaactttttgcaaaagatggacacttttagtctttcaaaatagtctttataaa-tacaaatatcgactaaaagtgaataa 6449643  T
Q  230 attttttgtagggactaaacttgaaagcttctaattt 266  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  6449642 attttttgtaaggactaaacttgaaagcttgtaattt 6449606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 270
Target Start/End: Complemental strand, 11672625 - 11672436
Alignment:
Q  81 cctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttacaaaaatggatatttttagt 180  Q
    |||||||||||||  | ||||||||| | ||||||||| |||||||||||||||||||||  ||||||||| | |  ||||||||||| ||| |||||||    
T  11672625 cctataaaatttttatcgtaattttatttcttcaaaattttgtagtttgtaagaatagtctctattttaaaaaaaaattacaaaaatgtatacttttagt 11672526  T
Q  181 tctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttata 270  Q
     ||  |||||||||||||||||||   ||||  || |||||   |||||| |||||||| ||||||||||| ||| ||| ||||||||||    
T  11672525 cctgcaaaatagtccctataaaatataaataaagactaaaaaacaataaaatttttgtaaggactaaacttaaaaacttttaattttata 11672436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 291
Target Start/End: Original strand, 48282800 - 48282962
Alignment:
Q  125 gtttgtaagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagt 223  Q
    ||||||||||||||||  ||||| ||| || ||||||||||| | |||||||||||| ||||||||||||| ||||||||||  ||| |  | |||||||    
T  48282800 gtttgtaagaatagtctttatttaaaaaac-ttttacaaaaaatagatatttttagtcctctaaaatagtctctataaaatgt-aatgg--actaaaagt 48282895  T
Q  224 gaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||||||||||||||||||||||||||||| ||||| | ||  |||||||||| ||||||||    
T  48282896 gaataaattttttgtagggactaaacttgaaagcttttaattgtgta-cggactaaaaatatatttaa 48282962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 32 - 291
Target Start/End: Complemental strand, 31050146 - 31049886
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||| ||||| |||| ||||  |||||||||||||  |||||||||||| || | |||| |||| | ||  | |||||||||| ||||    
T  31050146 gttaaatatgtttttaatccctgcaaaatcacatgtttttaagtttagcccctataaaattataattgtaaatttagttctcgataatattgtagcttgt 31050047  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaa--tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaata 228  Q
    ||  ||||||| |||||| || || |||||||||||  |||| ||||||||||||| ||||||||| |||| |||||  ||||  ||    |||||||||    
T  31050046 aaagatagtcattattttgaaaaccttttacaaaaaaatggacatttttagttctccaaaatagtctctatgaaatgtaaatatgga-ccgaagtgaata 31049948  T
Q  229 aattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    | |||||| ||| ||||||||||||||| || ||||||| ||  |||||||||||||||||||    
T  31049947 atttttttatagagactaaacttgaaagtttgtaattttgta-aggactaaaaacatatttaa 31049886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 292
Target Start/End: Complemental strand, 22593454 - 22593194
Alignment:
Q  33 ttaaatatatttttagtccctac-aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgta 131  Q
    |||||||| ||||| |||| ||| ||||||| |||||| |||||||    |||| |||||||| |||| |||||| || |  | |||||  |||||||||    
T  22593454 ttaaatatgttttttgtccttacgaaatcacaagttttcaagtttagtttctattaaattttaatggtgattttagtcttctacaatatcatagtttgta 22593355  T
Q  132 agaatagtcaatattttaaatacattttaca-aaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaa 230  Q
    | |||||||  | ||||||| || |  |||| ||||| |||||||||||| ||||||||||||  ||||||||||  ||||| ||||||| |||||||      
T  22593354 aaaatagtcccttttttaaaaacttgatacataaaattgatatttttagtcctctaaaatagttgctataaaatgtaaatagggattaaaggtgaatatt 22593255  T
Q  231 ttttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaat 292  Q
    |||||| ||||||| |||||| ||||||| |||||||  | ||||||||||||| |||||||    
T  22593254 ttttttttagggacaaaacttaaaagcttataattttgca-gggactaaaaacaaatttaat 22593194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 15882302 - 15882103
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||| |||  |||||| |||||||| ||||||||||| |||| |||| ||||  |||||||    
T  15882302 gttaaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaactattcaagtttgt 15882203  T
Q  131 aagaatagtcaatatttt-aaatacat-tttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaat 227  Q
     | |||||||  |||||| | ||  || | ||| ||||||||||| ||||||| ||| || ||||||||| |||||| | ||||| || |||||||||||    
T  15882202 taaaatagtccctattttgagatttatatatacaaaaaatggatagttttagtcctccaagatagtccctctaaaatacaaatagggactaaaagtgaat 15882103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 166
Target Start/End: Original strand, 33609940 - 33610076
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tca-cgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttg 129  Q
    |||||||||||||||||||  |||||| ||| | ||||||||||||||   | |||||||||||| |||||||||||||  |||| |||||||||||||     
T  33609940 gttaaatatatttttagtctatacaaaatcatcaagtttttaagtttagttcttataaaattttaatggtaattttaatttttcataatattgtagttta 33610039  T
Q  130 taagaatagtcaatattttaaatacattttacaaaaa 166  Q
    |||||||||||  |||||| || || |||| ||||||    
T  33610040 taagaatagtccttattttgaaaactttttgcaaaaa 33610076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 38377805 - 38377992
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||| ||| |||||||||| |||||| |||| | ||||||||||||  ||||||||||||||| ||||||||||| ||             || ||| |    
T  38377805 gttaagtatgtttttagtccttacaaaatcacaaatttttaagtttagtccctataaaattttaatggtaattttagtc-------------taatttat 38377891  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    ||||||||||  ||||||||| || ||||| ||||| || | | ||||||| ||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  38377892 aagaatagtccctattttaaaaactttttataaaaaatgaacacttttagtcctccaaaatagtccctataaaatgcaaatagggaataaaagtgaataa 38377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 52123713 - 52123607
Alignment:
Q  166 atggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaatt 265  Q
    ||||||| ||||||| ||| ||||||||| ||||||||| | |||||  ||||||||||||| |||||| | ||| |||||||||| ||||||| ||| |    
T  52123713 atggatacttttagtcctccaaaatagtctctataaaatacaaatagatattaaaagtgaatcaattttctctagagactaaacttaaaagcttataact 52123614  T
Q  266 ttatagg 272  Q
    || ||||    
T  52123613 ttgtagg 52123607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 10574064 - 10574137
Alignment:
Q  163 aaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaatttttt 236  Q
    |||||||||||||||||| ||| |||||||||||| |||||||| ||||| || |||| |||||| ||||||||    
T  10574064 aaaatggatatttttagtcctccaaaatagtccctgtaaaatgcaaatagggactaaaggtgaattaatttttt 10574137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 270
Target Start/End: Complemental strand, 784187 - 784019
Alignment:
Q  102 ttttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctata 200  Q
    |||||||||| ||||||  | |||||| ||| |||| ||  |||||| || || ||||||||||| ||||||||||||||  || |||||||||| ||||    
T  784187 ttttaatcctccaaaat--tatagtttctaaaaataatccctattttgaaaactttttacaaaaaatggatatttttagtcatccaaaatagtccgtata 784090  T
Q  201 aaatgccaatagcgattaaaagtgaataa-attttttgtagggactaaacttgaaagcttctaattttata 270  Q
    |||||  |||||  | |||||||||||||  |||||| || |||||||| || ||| ||| ||||||||||    
T  784089 aaatgaaaatagaaactaaaagtgaataattttttttataaggactaaatttaaaaacttataattttata 784019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 47472233 - 47472290
Alignment:
Q  82 ctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagt 139  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||| ||| ||||||||||    
T  47472233 ctataaaattttaatggtaattttagtccttcataatattgtaatttataagaatagt 47472290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 37057364 - 37057276
Alignment:
Q  116 aatattgtagtttgtaagaatagtcaatattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaat 204  Q
    |||||||| |||||||||| ||||| || ||||||| || ||| | ||||||||||||||||| | ||| |||||||| | ||||||||    
T  37057364 aatattgttgtttgtaagagtagtccatgttttaaaaacttttaataaaaatggatatttttaatcctcaaaaatagttcatataaaat 37057276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 23410468 - 23410327
Alignment:
Q  116 aatattgtagtttgtaagaatagtcaatatttta--aatacattttacaaaaa-tggatatttttagttctctaaaatagtccctata-aaatgccaata 211  Q
    ||||||||||||||||||||||||  || |||||  || | |  ||||||||| |  ||| ||||||| ||| |||||||| | |||| |||||| ||||    
T  23410468 aatattgtagtttgtaagaatagttcatgttttataaaaaaaaattacaaaaaatatatacttttagtcctccaaaatagttcatatataaatgcaaata 23410369  T
Q  212 gcgattaaaagtgaataaattttttgtagggactaaacttga 253  Q
      || |||||||||||| ||||||||||||||||||| ||||    
T  23410368 aagaataaaagtgaatatattttttgtagggactaaaattga 23410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 20403240 - 20403328
Alignment:
Q  116 aatattgtagtttgtaagaatagtcaatattttaaatacattttacaaaa--atggatatttttagttctctaaaatagtccctataaa 202  Q
    |||||| ||||||||||||||||||  || | |||| || ||||||||||  ||||||||||||| | ||| | |||||||||||||||    
T  20403240 aatattatagtttgtaagaatagtccctaatctaaaaactttttacaaaaaaatggatatttttattcctccacaatagtccctataaa 20403328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 43914041 - 43914086
Alignment:
Q  33 ttaaatatatttttagtcccta-caaatcacgagtttttaagttta 77  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  43914041 ttaaatatatttttagtccctataaaatcacgagtttttaagttta 43914086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 10573949 - 10574057
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||||| | |||||| |||| |||||| || ||||    |||||||| | || ||| |||||||||||| || |||||||||||||||    
T  10573949 gttaaatatgtttttagttcttacaaaatcacaagttttcaaatttagtttctataaaaatataatggcaattttaatcctccataatattgtagtttgt 10574048  T
Q  131 aagaatagt 139  Q
    || ||||||    
T  10574049 aaaaatagt 10574057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 47472376 - 47472435
Alignment:
Q  231 ttttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||||||||||| || ||||||| ||||||| || |||||| |||||||||||||    
T  47472376 ttttttgtagggactaaatttaaaagcttgtaattttgta-gggacttaaaacatatttaa 47472435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 43914092 - 43914184
Alignment:
Q  197 tataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||  ||||| ||| |||||||||||| |||||||||| ||||| |||| |||  || ||||||  || |||| |||||||||||||||    
T  43914092 tataaaatgtaaatagagatgaaaagtgaataacttttttgtagagactatacttaaaaatttataattt--taagggattaaaaacatatttaa 43914184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 291
Target Start/End: Original strand, 35414587 - 35414688
Alignment:
Q  189 atagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatt 288  Q
    |||||||||||||||||  ||||  || ||||| ||||| ||   ||| || ||||||||||||||||||| ||||||| || |||| || |||||||||    
T  35414587 atagtccctataaaatgtaaatatagactaaaaatgaatcaaaaatttatatggactaaacttgaaagcttgtaattttgta-gggattagaaacatatt 35414685  T
Q  289 taa 291  Q
    |||    
T  35414686 taa 35414688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 24367821 - 24367881
Alignment:
Q  231 ttttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaat 292  Q
    |||||| ||| |||||||||||||||||  |||||||||| |||| ||| ||||||||||||    
T  24367821 ttttttatagagactaaacttgaaagctcataattttata-gggattaagaacatatttaat 24367881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 42972725 - 42972665
Alignment:
Q  231 ttttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaat 292  Q
    ||||||||| ||||||||||| |||| ||  ||||||||| ||||| |||||||||||||||    
T  42972725 ttttttgtaaggactaaacttaaaagttttcaattttata-gggaccaaaaacatatttaat 42972665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 43710920 - 43711033
Alignment:
Q  116 aatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcg 214  Q
    |||||||||||||||||||||||||  |||||| | |   || ||| ||||||||||| |||| || | |||| |||||| |||| |||| | ||||| |    
T  43710920 aatattgtagtttgtaagaatagtctttattttgatttttttatacaaaaaatggatacttttggtccgctaatatagtctctatgaaatacaaatagag 43711019  T
Q  215 attaaaagtgaata 228  Q
    | ||||||||||||    
T  43711020 actaaaagtgaata 43711033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 1162021 - 1162068
Alignment:
Q  164 aaatggatatttttagttctctaaaatagtccctataaaatgccaatag 212  Q
    ||||||||||| ||||||||| || |||||||||||||||||| |||||    
T  1162021 aaatggatattattagttctc-aacatagtccctataaaatgcaaatag 1162068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 109 - 351
Target Start/End: Complemental strand, 25411638 - 25411399
Alignment:
Q  109 ccttcaaaatattgtagtttgtaagaatagtcaatattttaaatac-attttacaaaaatggatatttttagttctctaaaatagtccctataaaatgcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||||||||       
T  25411638 ccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacttttttacaaaaatggatatttttaattctctaaaatagttcctataaaatata 25411539  T
Q  208 aatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaatnnnnnnnntatcaat 307  Q
    || || || |||||| ||||| | || ||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||        |||||||    
T  25411538 aacagtgactaaaagagaataga-ttcttgcagggactaaacttgaaagcttctaattttaca-gggactaaaaacatatttaat--aaaaaatatcaat 25411443  T
Q  308 aaatgcttgtgaataggactttgtttaagttgacatgcctcaat 351  Q
    |||||||||||||||||| ||||||||| |||| || |||||||    
T  25411442 aaatgcttgtgaataggattttgtttaatttgaaatacctcaat 25411399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 27567842 - 27567575
Alignment:
Q  27 ttagtgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||| |||||||  ||||||||||||||| ||||||||||| |||| || ||||||||||    
T  27567842 ttagggttaaatatatttttagtccctacaaaatcatgagttttaaagtttattccctataaaattttaatggtaattttagtcctacataatattgtag 27567743  T
Q  126 tttgtaagaatagtcaatattttaaatacattttacaaaaat---ggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaag 222  Q
    |||||||||||||||  |||||| || || |||| ||||||    | ||||||||||| ||| |||||||||| |||||||||| ||||  |||||||||    
T  27567742 tttgtaagaatagtccttattttgaaaactttttgcaaaaaaaaagtatatttttagtcctccaaaatagtccttataaaatgcaaatatggattaaaag 27567643  T
Q  223 tgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||| |||  |||| |||||||||||||||||| ||| ||||||| ||||||  |||||||||||||||    
T  27567642 tgaagaaaacttttttagggactaaacttgaaaacttgtaattttgtagggg-ttaaaaacatatttaa 27567575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 291
Target Start/End: Complemental strand, 13009480 - 13009275
Alignment:
Q  87 aaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttacaaaaa--tggatatttttagttctc 184  Q
    |||||||| ||||||||||| ||||  | |||||||||||||||||||||||||  ||||||||  || |||||||||||  || ||| ||||||| |||    
T  13009480 aaattttaatggtaattttagtcctctataatattgtagtttgtaagaatagtcgttattttaataactttttacaaaaaagtgaatacttttagtcctc 13009381  T
Q  185 taaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaaca 284  Q
     ||| |||||||| |||||||  ||||| ||||||  |||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||| |    
T  13009380 caaattagtccctgtaaaatgtaaatagagattaattgtgaataaaacttttgtagggactaaacttgaaagcttgtaattttata-gggactaaaaata 13009282  T
Q  285 tatttaa 291  Q
    |||||||    
T  13009281 tatttaa 13009275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 42 - 291
Target Start/End: Original strand, 34471230 - 34471483
Alignment:
Q  42 tttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtc 140  Q
    ||||||||||||||||| |||| || |||||||||||  ||||||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||| |    
T  34471230 tttttagtccctacaaaatcacaagcttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaataatagac 34471329  T
Q  141 aatattttaa---atacattttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaatttttt 236  Q
      |||||| |    |   |||||| ||||||| |||  |||||| ||  ||||||||| ||||||||||| ||||| || |||||||||||| |||||||    
T  34471330 cttattttgattttttttttttacaaaaaatgtatacctttagtccttcaaaatagtctctataaaatgcaaatagggactaaaagtgaatacatttttt 34471429  T
Q  237 gtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||| || ||||||| ||||||| ||||||| ||  |||||| ||||||||||||    
T  34471430 gtagagattaaactttaaagcttataattttgta-aggactagaaacatatttaa 34471483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 25412109 - 25412033
Alignment:
Q  43 ttttagtccctacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaata 119  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  25412109 ttttagtccctacaaatcacgagtttttaagtttaaatcctataaaattttagtggtaattttaatcctttaaaata 25412033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 289
Target Start/End: Original strand, 20132051 - 20132309
Alignment:
Q  32 gttaaatatatttttagtccctaca-aatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||| | ||| | |||||||||||||||    | ||||||||||| | ||||||||| ||||  |||||||| || |||||    
T  20132051 gttaaatatgtttttagtccctatataattatgagtttttaagtttagtttcaataaaattttaattgtaattttagtcctaaaaaatattataatttgt 20132150  T
Q  131 aagaatagtcaatattttaaatacattttacaaaa-atggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    ||||||||||  | |||| || || |||||||||| |||||||  |||||| ||| ||||||||||||||||||| | ||||| || ||||| |||||||    
T  20132151 aagaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctccaaaatagtccctataaaatacaaatagggactaaaaatgaataa 20132250  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatattt 289  Q
    |   |||||| | ||||||  | ||||||| |||||||||| || |||||||| ||||||    
T  20132251 aaaatttgtaagaactaaatgtcaaagcttgtaattttata-ggaactaaaaatatattt 20132309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 292
Target Start/End: Complemental strand, 30851811 - 30851546
Alignment:
Q  27 ttagtgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    |||||||||||||| |||||||| |||| ||| | | ||||||| || |||| | |||||||||||||| ||||||||||| |  | || ||||||| ||    
T  30851811 ttagtgttaaatat-tttttagttcctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaag 30851713  T
Q  126 tttgtaagaatagtcaatattttaaatacattttacaaaaatgg-atatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtg 224  Q
    |||||||||||||||  ||||||||| |  ||| |||||||    ||| ||||||| ||| ||||||||  |||||| |||  | ||| || ||||||||    
T  30851712 tttgtaagaatagtccctattttaaaaaattttgacaaaaaaattataattttagtcctcgaaaatagtgtctataagatgtaagtagggactaaaagtg 30851613  T
Q  225 aataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaat 292  Q
    ||||||| |||| ||| ||||||||||||||  || ||||||||||  ||||||||||||||||||||    
T  30851612 aataaatgttttatagagactaaacttgaaaatttgtaattttata-aggactaaaaacatatttaat 30851546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 291
Target Start/End: Original strand, 11297755 - 11298014
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||| |||||||||| | | ||||||||||| |||   ||||| |||||||| ||||||||||| |||| ||||||||| ||||||||    
T  11297755 gttaaatatgtttttattccctacaaaataatgagtttttaagcttagttcctatgaaattttaatggtaattttagtcctccaaaatattttagtttgt 11297854  T
Q  131 aagaatagtcaatattttaaatacattttac--aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaata 228  Q
    || |||||||  |||||| || || || |||  ||||||||||| ||||||| ||| |||||||||||| |||||| | ||||| ||  ||||||||  |    
T  11297855 aaaaatagtccctattttgaaaactttatactaaaaaatggatacttttagtcctccaaaatagtccctttaaaatacaaatagggacaaaaagtgataa 11297954  T
Q  229 aattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||   ||    | |||||||||||||||||| |||||| ||| |||| |||||||||||||||    
T  11297955 aaaaatt--ccgagactaaacttgaaagcttgtaatttaata-gggattaaaaacatatttaa 11298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 56 - 272
Target Start/End: Original strand, 28098554 - 28098770
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaataca 155  Q
    |||||| ||||||||||||||   |  |||||||||||| ||||||||||| ||||  | ||||  ||||||||||  |||| || ||||||| || ||     
T  28098554 aaatcatgagtttttaagtttggtctttataaaattttaatggtaattttagtcctcgataata--gtagtttgtagaaataatccatattttgaaaact 28098651  T
Q  156 tttt-acaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttga 253  Q
    |||| ||||||| || ||||||||||| ||| ||||||||||||||||||||| ||||| || ||||||| ||||| |||||||||   ||||||||| |    
T  28098652 tttttacaaaaaatgaatatttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaagtaaataatttttttgtaaaaactaaacttaa 28098751  T
Q  254 aagcttctaattttatagg 272  Q
    || ||| ||||||||||||    
T  28098752 aaccttgtaattttatagg 28098770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 25067700 - 25067825
Alignment:
Q  82 ctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttagt 180  Q
    ||||||||||||| |||||||||||||||| || |||||| |||||||||| |||||||  |||||| || ||  ||||| ||||||||||| |||||||    
T  25067700 ctataaaattttaatggtaattttaatcctccataatattatagtttgtaaaaatagtccttattttgaaaactgtttacaaaaaatggatacttttagt 25067799  T
Q  181 tctctaaaatagtccctataaaatgc 206  Q
      || ||||||||| ||| |||||||    
T  25067800 cttccaaaatagtctctagaaaatgc 25067825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 30851924 - 30851828
Alignment:
Q  174 ttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttata 270  Q
    ||||||| ||| ||||||||  |||||| |||  | ||| ||||| ||||||||||||||||| ||| ||||||||||||||| || ||||||||||    
T  30851924 ttttagtcctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttata 30851828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 48696448 - 48696532
Alignment:
Q  143 tattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaat 227  Q
    ||||||||| || ||||| ||||  | ||||||||||| ||| ||||||||| ||||||||||| ||||| || |||||||||||    
T  48696448 tattttaaaaactttttagaaaacagaatatttttagtcctccaaaatagtctctataaaatgcaaatagggactaaaagtgaat 48696532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 12925246 - 12925383
Alignment:
Q  67 ttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaa 165  Q
    |||||||||||   |||||||||||||| || |||||||| | || ||||| ||| || ||| ||| |||| ||  |||||| || || |||||| ||||    
T  12925246 ttttaagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttaaaactttttacaaaaa 12925345  T
Q  166 atggatatttttagttctctaaaatagtccctataaaa 203  Q
    || |||||||||||| ||| |||||| ||| |||||||    
T  12925346 atagatatttttagtcctccaaaataatccttataaaa 12925383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 21367165 - 21367257
Alignment:
Q  30 gtgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatatt 121  Q
    ||||||||||| ||||||| ||||| ||| | | |||||||||| ||||  |  |||||||||||| |||||||||||||||| || ||||||    
T  21367165 gtgttaaatatgtttttagcccctataaaattatgagtttttaaatttagtctttataaaattttaatggtaattttaatcctccataatatt 21367257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 28555278 - 28555353
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaatttta 106  Q
    ||||||||| ||||||||| ||||||| ||  || ||||||||||||  || |||||||||||| |||||||||||    
T  28555278 gttaaatatgtttttagtctctacaaaatcgtgattttttaagtttagtccatataaaattttaatggtaatttta 28555353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 38487352 - 38487423
Alignment:
Q  66 tttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaata 137  Q
    ||||||||||||  |  |||||||||||| |||||||||||||| || | |||||| |||||||||| ||||    
T  38487352 tttttaagtttagtctttataaaattttaatggtaattttaatcatttataatattatagtttgtaataata 38487423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 40751769 - 40751682
Alignment:
Q  64 agtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaa 151  Q
    |||||| |||||||   |||||||||||||| || ||||| |  ||||||| |||||| ||||||||||||||| ||  |||||||||    
T  40751769 agttttcaagtttagttcctataaaattttaatgctaattattgtccttcataatattttagtttgtaagaataatccctattttaaa 40751682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 7379097 - 7379158
Alignment:
Q  64 agtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    ||||||||||||||| || |||||||||||| || | |||||| || |||| ||||||||||    
T  7379097 agtttttaagtttaatccttataaaattttaatgattattttagtcattcataatattgtag 7379158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 39596863 - 39596814
Alignment:
Q  83 tataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaa 132  Q
    |||||| ||||| || |||||||| |||| ||||||||||||||||||||    
T  39596863 tataaatttttaatgataattttagtcctccaaaatattgtagtttgtaa 39596814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 22485185 - 22485083
Alignment:
Q  187 aaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacata 286  Q
    ||||||||| |||||||||| ||||| || ||||||| ||||||  ||| ||| ||||||||||| | ||||  |||||||  |||| |||||||||||     
T  22485185 aaatagtccttataaaatgcaaatagggactaaaagtaaataaaaattt-gtacggactaaacttaagagctggtaattttggaggg-actaaaaacatg 22485088  T
Q  287 tttaa 291  Q
    |||||    
T  22485087 tttaa 22485083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 19343549 - 19343789
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||||| |||||||| ||| |||||||||||||||  | |||||||||||||||| |||||||| ||||  |||||||||||||||||    
T  19343549 gttaaatatgtttttagtacctacaaaatcatgagtttttaagtttagtctctataaaattttagtgataattttagtcctaaaaaatattgtagtttgt 19343648  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    || ||||||  |||||||||| || ||||||||||| | |||| ||||||| ||| ||| |||||| |||||||||| ||||| || |||||||||||||    
T  19343649 aaaaatagttcatattttaaaaactttttacaaaaaatagataattttagtcctccaaactagtccttataaaatgcaaatagggactaaaagtgaataa 19343748  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttata 270  Q
    |||||||| |||| |||||||||||||||| ||||||||||    
T  19343749 attttttgcagggcctaaacttgaaagcttgtaattttata 19343789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 63 - 289
Target Start/End: Original strand, 16089714 - 16089940
Alignment:
Q  63 gagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttaca 162  Q
    |||||||||||||||  ||| ||||||||||| | ||||||||| ||||  |||||||| ||||||||||||||||||  | |||| || || |||||||    
T  16089714 gagtttttaagtttagtcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaatagtctctgtttttaaaactttttaca 16089813  T
Q  163 aaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttct 261  Q
    |||| ||| || ||||||| ||||||||||||||||||||||||| ||||  || ||||||||||||||   |||||| ||||||||| |||||| || |    
T  16089814 aaaaatgggtacttttagtcctctaaaatagtccctataaaatgcaaatatggactaaaagtgaataaaaaatttgtaaggactaaacgtgaaagtttgt 16089913  T
Q  262 aattttataggggactaaaaacatattt 289  Q
    |||||||| ||| |||||||| ||||||    
T  16089914 aattttat-gggaactaaaaatatattt 16089940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 34 - 273
Target Start/End: Original strand, 26724110 - 26724352
Alignment:
Q  34 taaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaa 132  Q
    ||||||| ||||||||||||||||| |||||||||||  ||||||  ||||||||||||||| ||||||||||| || | || |  |||||| ||| |||    
T  26724110 taaatatgtttttagtccctacaaaatcacgagttttcgagtttagtccctataaaattttaatggtaattttagtcgtccatagaattgtaatttataa 26724209  T
Q  133 gaatagtcaatattttaaatacattttacaaaa--atggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaa 230  Q
    ||| ||||  |||||| || || ||||||||||  ||||||| ||||||| ||| |||||||||| |||||||||  ||||| || ||||||||||||||    
T  26724210 gaacagtccctattttgaaaactttttacaaaaaaatggatacttttagtcctccaaaatagtccttataaaatgaaaatagagactaaaagtgaataaa 26724309  T
Q  231 ttttttgtagggactaaacttgaaagcttctaattttataggg 273  Q
    |||||| ||||| |||||||| ||| ||| ||||||| |||||    
T  26724310 ttttttataggggctaaacttaaaaacttgtaattttgtaggg 26724352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 5459268 - 5459049
Alignment:
Q  71 aagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttacaaaaa-tgg 169  Q
    |||||||  ||||||||||||||| |||||| |||| ||||||| |||||| |||||| ||||||| |||  ||||||  | |  || |||||||| ||     
T  5459268 aagtttagtccctataaaattttaatggtaaatttagtccttcataatattatagtttataagaat-gtccctattttttaaattttctacaaaaaatga 5459170  T
Q  170 atatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttat 269  Q
    ||| ||||| | ||| ||||||||||||||||||||| ||||| |||||||| ||||||||    ||||||||||||||||| ||| ||| |||||||||    
T  5459169 atacttttattcctccaaaatagtccctataaaatgcaaatagggattaaaaatgaataaaaaaattgtagggactaaacttaaaaacttataattttat 5459070  T
Q  270 aggggactaaaaacatatttaa 291  Q
    | | ||||||||||||||||||    
T  5459069 a-gagactaaaaacatatttaa 5459049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 114 - 290
Target Start/End: Original strand, 15069998 - 15070175
Alignment:
Q  114 aaaatattgtagtttgtaagaatagtcaatattttaaatacattttacaaaa-atggatatttttagttctctaaaatagtccctataaaatgccaatag 212  Q
    ||||||||||||||||||| |||||||   ||||| || || |||||||||| ||||||||||||||| ||  ||||||||| ||||||||||  |||||    
T  15069998 aaaatattgtagtttgtaataatagtctcgattttgaaaactttttacaaaaaatggatatttttagtccttcaaaatagtctctataaaatgtaaatag 15070097  T
Q  213 cgattaaaagtgaataaa-ttttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatattta 290  Q
     || |||||||||||||| ||||||||||||||||||||| |||  || ||||||| || | ||||||||| |||||||    
T  15070098 ggactaaaagtgaataaatttttttgtagggactaaacttaaaaatttgtaatttttta-gagactaaaaatatattta 15070175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 39058628 - 39058478
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||| |||||| ||| |||| ||||||||||||||| ||||||||||||||| ||||||||||| |||| || || ||||||||||||    
T  39058628 gttaaatatgtttttaatccctataaaatcacaagtttttaagtttaacccctataaaattttaatggtaattttagtcctccataacattgtagtttgt 39058529  T
Q  131 aagaatagtcaatattttaaatacattttacaaa-aatggatatttttagt 180  Q
    ||||||||||  |||||| || || ||||||||| |||||| | |||||||    
T  39058528 aagaatagtccttattttgaaaactttttacaaacaatggacacttttagt 39058478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 182 - 292
Target Start/End: Original strand, 1298841 - 1298952
Alignment:
Q  182 ctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaa--ttttttgtagggactaaacttgaaagcttctaattttataggggactaa 279  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||||||  |||||||||||||||||| || ||||||| ||||||| || ||||||||    
T  1298841 ctctaaaatagtccctataaaatgcaaatagggactaaaagtgaataaattttttttgtagggactaaatttaaaagcttgtaattttgta-gggactaa 1298939  T
Q  280 aaacatatttaat 292  Q
    |||||||||||||    
T  1298940 aaacatatttaat 1298952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 291
Target Start/End: Original strand, 38948572 - 38948779
Alignment:
Q  83 tataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttagtt 181  Q
    |||||||||||| || |||||||| ||||||| ||| | ||||||| ||||| ||||  |||||||||| || |||||| ||||||||| | |||||||     
T  38948572 tataaaattttaatgataattttagtccttcataatttagtagtttataagattagttcatattttaaaaactttttacaaaaaatggacacttttagtc 38948671  T
Q  182 ctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaa 281  Q
    | |  |||||||||||||||||| | ||||| ||  |||||||||| ||| |||||||  |||||||||||||| ||| ||||||| || |  |||||||    
T  38948672 cacccaaatagtccctataaaattcaaatagggaccaaaagtgaat-aatgttttgtatagactaaacttgaaaacttgtaattttgta-gaaactaaaa 38948769  T
Q  282 acatatttaa 291  Q
    ||||||||||    
T  38948770 acatatttaa 38948779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 36235783 - 36235969
Alignment:
Q  63 gagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttaca 162  Q
    ||||||| || |||||  ||||||||||||||  ||||||||||  ||| || |||||| ||||||||||||| ||||   |||||||| || ||||| |    
T  36235783 gagttttcaaatttaattcctataaaattttaagggtaattttagccctccataatattttagtttgtaagaacagtccccattttaaaaactttttata 36235882  T
Q  163 aaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaa 248  Q
    |||| || ||||||||| | ||| |||||||||| |||||||||| ||||  || ||||| ||||||||   |||||||||||||||    
T  36235883 aaaaatgaatatttttattcctccaaaatagtccttataaaatgcaaataaggactaaaaatgaataaaaaatttgtagggactaaa 36235969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 5159647 - 5159472
Alignment:
Q  33 ttaaatatatttttagtccctac-aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgta 131  Q
    ||||| || |||||||||||||| |||||| ||||||||| |||||  | ||||||||||||| | ||||||||||||||  ||| |||| |||||| ||    
T  5159647 ttaaaaatgtttttagtccctaccaaatcatgagtttttaggtttagtctctataaaattttaatagtaattttaatcctaaaaattattatagtttcta 5159548  T
Q  132 agaatagtcaatattttaaatacattttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgc 206  Q
    | |||||||  ||||||||| || ||| || ||||||||||| || |||| ||| |||||| |  |||||||||||    
T  5159547 aaaatagtccttattttaaaaacttttaacaaaaaatggatacttgtagtcctccaaaataatatctataaaatgc 5159472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 230
Target Start/End: Original strand, 38607294 - 38607494
Alignment:
Q  33 ttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgta 131  Q
    |||||||| |||||| | |||| ||| ||| |||||||||||||||    ||||||||||||| | ||||||||| ||||||| ||||||||||||| |     
T  38607294 ttaaatatgtttttaatacctaaaaactcaagagtttttaagtttagtttctataaaattttaattgtaattttagtccttcataatattgtagtttttt 38607393  T
Q  132 agaatagtcaatattttaaatacattttac--aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    |||||||||  |||||| || || | ||||  ||||||  |||||||||||  |  ||||||||| ||||||||||| ||| | || ||||||| |||||    
T  38607394 agaatagtccttattttgaaaacttgttaccaaaaaatatatatttttagtctttcaaaatagtctctataaaatgcaaatcgggactaaaagtaaataa 38607493  T
Q  230 a 230  Q
    |    
T  38607494 a 38607494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 291
Target Start/End: Complemental strand, 39125942 - 39125724
Alignment:
Q  69 ttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaat 167  Q
    |||||||||| |||||| || ||||| | ||||||||| ||||||| |||||| || |||  ||||||||||  || |||||| |  | |||| ||||||    
T  39125942 ttaagtttaatccctatgaagttttaattgtaattttagtccttcataatattatatttttcaagaatagtccttactttaaaaatttgttacgaaaaat 39125843  T
Q  168 ggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaatttt 267  Q
     |||| |||||||| |  ||||||||| ||||||||||  |||   || ||||||| |||| ||||||| |||| ||||||||||||||  | |||||||    
T  39125842 agatacttttagtttttcaaaatagtctctataaaatgtaaatcaagactaaaagtaaatatatttttt-taggaactaaacttgaaagtatataatttt 39125744  T
Q  268 ataggggactaaaaacatatttaa 291  Q
    |    |||||||||||||||||||    
T  39125743 a----ggactaaaaacatatttaa 39125724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 2298976 - 2298903
Alignment:
Q  217 taaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||||||||||||| |||||| ||||||| ||||||| ||||||| || ||||||| ||||||||||||    
T  2298976 taaaagtgaataaattttttatagggattaaacttaaaagcttgtaattttgta-gggactataaacatatttaa 2298903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 14820584 - 14820414
Alignment:
Q  34 taaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaa 132  Q
    ||||||| |||||||| |||| ||| |||  |||||| |||||||  || || |||||||||||||||||||||| |||  | |||| ||||||||||||    
T  14820584 taaatatgtttttagttcctataaaatcataagttttcaagtttagtccttacaaaattttagtggtaattttaaccctctataataatgtagtttgtaa 14820485  T
Q  133 gaatagtcaatattttaaatacatttta-caaaaatggatatttttagttctctaaaatagtccctataaa 202  Q
     |||| || |||||||||| || |||||  ||||||||  | ||||||| ||  |||||||||| ||||||    
T  14820484 aaataatccatattttaaaaactttttataaaaaatggtcacttttagtccttcaaaatagtccttataaa 14820414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 39057197 - 39057093
Alignment:
Q  186 aaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacat 285  Q
    ||||||||||| ||||||||  ||||  ||||||||||||||||||||||||||| ||| |||||| |||  || ||||||| || | ||||||||| ||    
T  39057197 aaaatagtcccaataaaatgtaaataaggattaaaagtgaataaattttttgtagagaccaaacttaaaaatttgtaattttgta-gagactaaaaatat 39057099  T
Q  286 atttaa 291  Q
    ||||||    
T  39057098 atttaa 39057093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 35270848 - 35270929
Alignment:
Q  208 aatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||| || ||||||| || || |||||| ||||||||||    
T  35270848 aatagggattaaaagtgaataaattttta-tagggactaaacttgaaagtttttaattttgta-ggaactaaagacatatttaa 35270929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 2160369 - 2160430
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    |||||||||| ||||||||||||||  |  |||||||||||| |||||||||||||||||||    
T  2160369 tacaaatcacaagtttttaagtttagtcgatataaaattttaatggtaattttaatccttca 2160430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 41635927 - 41635866
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    ||||||||||  |||||||||||||| |  |||||||||||| |||||||||||||||||||    
T  41635927 tacaaatcacatgtttttaagtttaatcgatataaaattttaatggtaattttaatccttca 41635866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 35529755 - 35529827
Alignment:
Q  217 taaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||||||| |||||| |||||||||||||||||  |  | ||||||||||| |||||||||||||||||    
T  35529755 taaaagtgaataaaatttttg-agggactaaacttgaaacgtcgtgattttataggg-actaaaaacatatttaa 35529827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 3137148 - 3137209
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    |||||||||| ||||||||||||||  |  |||||||||||| |||||||||| ||||||||    
T  3137148 tacaaatcacaagtttttaagtttagtcaatataaaattttaatggtaattttcatccttca 3137209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 34005703 - 34005654
Alignment:
Q  162 aaaaatggatatttttagttctctaaaatagtccctataaaatgccaata 211  Q
    ||||||| ||||||||||| || |||||||||||||||||||||| ||||    
T  34005703 aaaaatgtatatttttagtcctttaaaatagtccctataaaatgcaaata 34005654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 291
Target Start/End: Complemental strand, 22861120 - 22860875
Alignment:
Q  37 atatatttttagtccctacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaat 136  Q
    ||||||||||| || |||| ||||| ||||||| ||||||||    | |||||||||| | ||||||||| ||||  | | ||||||||||||| | |||    
T  22861120 atatatttttaatcactactaatcatgagttttgaagtttaatttatgtaaaattttaattgtaattttagtcctctatagtattgtagtttgttataat 22861021  T
Q  137 agtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttt 235  Q
      ||  ||||||||| |  ||||||||||| ||||||| |||||| ||   ||| ||| |||||||||||| | ||     ||||||||||||||  |||    
T  22861020 --tcc-tattttaaaaagtttttacaaaaaatggatatatttagtcctt--aaacagtgcctataaaatgcaactac----taaaagtgaataaaagttt 22860930  T
Q  236 tgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||   ||||||||| ||||||| ||||||| || ||||||||||||| ||||||    
T  22860929 tgtaaaaactaaactttaaagcttgtaattttgta-gggactaaaaacacatttaa 22860875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 30403647 - 30403604
Alignment:
Q  123 tagtttgtaagaatagtcaatattttaaatacattttacaaaaa 166  Q
    ||||||||||||||||||| ||||||||| || |||||||||||    
T  30403647 tagtttgtaagaatagtcattattttaaaaactttttacaaaaa 30403604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 6502289 - 6502339
Alignment:
Q  156 ttttacaaaaat-ggatatttttagttctctaaaatagtccctataaaatg 205  Q
    |||||||||||| ||||| ||||||| ||| ||||||||||||||||||||    
T  6502289 ttttacaaaaattggatacttttagtcctccaaaatagtccctataaaatg 6502339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 458495 - 458611
Alignment:
Q  176 ttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa-attttttgtagggactaaacttgaaagcttctaattttatagggg 274  Q
    ||||| ||| |||||||||||||||||||   ||||  ||||||||||| ||||  |||||| ||| ||| |||||| ||||||  |||||||  | |||    
T  458495 ttagtcctccaaaatagtccctataaaatttgaataaggattaaaagtggataattttttttatagagacaaaacttaaaagctcataattttgca-ggg 458593  T
Q  275 actaaaaacatatttaat 292  Q
    | ||||||||||||||||    
T  458594 attaaaaacatatttaat 458611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 3746672 - 3746745
Alignment:
Q  33 ttaaatatatttttagtccctacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaatttta 106  Q
    |||||||| |||||||||||   |||| |||||||||||| ||||   |||||||||||||| || ||||||||    
T  3746672 ttaaatatgtttttagtcccacaaaattacgagtttttaaatttagttcctataaaattttaatgctaatttta 3746745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 3746838 - 3746902
Alignment:
Q  186 aaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaactt 251  Q
    |||| |||||||||||||||  ||||  ||||| ||||||||||| ||||||||| ||||||||||    
T  3746838 aaaacagtccctataaaatgtaaatatagattataagtgaataaa-tttttgtagagactaaactt 3746902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 14820528 - 14820584
Alignment:
Q  233 ttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatattta 290  Q
    ||||||| ||||||||||||||| ||| | |||||||| || ||||||||||||||||    
T  14820528 ttttgtaaggactaaacttgaaaacttatgattttata-ggaactaaaaacatattta 14820584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 32 - 291
Target Start/End: Original strand, 34359328 - 34359589
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||||||| |||||| ||| |||||||||||||||  || |||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  34359328 gttaaatatgtttttagtccttacaaaatcatgagtttttaagtttagtccatataaaattttaatggtaattttattcctccaaaatattatagtttgt 34359427  T
Q  131 aagaatagtcaatattttaaatacattttacaaaa-atggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    || ||| |||  | |||| || || |||||||||| ||||||| ||||||| ||  |||| |||||||||||||||  |||||  |||||||||||||||    
T  34359428 aaaaatggtccctgttttgaaaactttttacaaaaaatggataattttagtccttcaaaaaagtccctataaaatgtaaataggaattaaaagtgaataa 34359527  T
Q  230 attttttgtagggactaaacttgaaagcttctaa-ttttataggggactaaaaacatatttaa 291  Q
    | |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  34359528 aatttttgtagggactaaacttgaaagcttgtaatttttata-gggactaaaaacatatttaa 34359589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 33 - 291
Target Start/End: Complemental strand, 50334805 - 50334544
Alignment:
Q  33 ttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgta 131  Q
    |||||||||||||||||| ||| ||| ||| |||||||| | ||||| ||||||||||||||| || |||||||| || | |||||||||||||||||||    
T  50334805 ttaaatatatttttagtctctataaaatcatgagttttttactttaatccctataaaattttaatgataattttagtcttccaaaatattgtagtttgta 50334706  T
Q  132 agaatagtcaatattttaaatacatttt--acaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaata 228  Q
    | | ||||   |||||| ||||| ||||  ||||||| |||||||||||||| ||||||||||||||||||||||||| |||||  | ||||||||||||    
T  50334705 aaattagttcctattttgaatactttttttacaaaaaatggatatttttagtcctctaaaatagtccctataaaatgcaaataggaactaaaagtgaata 50334606  T
Q  229 aattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||||||||||||| |||||| ||| |||||||| |  ||| |||||||||||||||    
T  50334605 aattttttgtagggactaaatttgaaaacttataattttaga-aggattaaaaacatatttaa 50334544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 44447023 - 44446781
Alignment:
Q  32 gttaaatatatttttagtccctaca-aatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||| | ||| | |||||||||||||||| ||| ||||||||||| | ||||||||| ||||  |||||||| ||||||||    
T  44447023 gttaaatatgtttttagtccctatataattatgagtttttaagtttaatcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgt 44446924  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    ||||||||||  | |||| || || ||||||||||| ||  || ||||||| ||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  44446923 aagaatagtctctgttttgaaaactttttacaaaaaatgtgtacttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataa 44446824  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttatagg 272  Q
    |  ||||||| | ||||||| ||||||||| ||||||||||||    
T  44446823 aaattttgtaagaactaaacgtgaaagcttgtaattttatagg 44446781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 32 - 291
Target Start/End: Original strand, 39340768 - 39341027
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||| |||||||||||| |||| ||||||||||||||  ||||||||| ||||| ||||||||||| || | ||||||||||||||||||    
T  39340768 gttaaatatgttttgagtccctacaaaatcactagtttttaagtttagtccctataaagttttaatggtaattttagtcatccaaaatattgtagtttgt 39340867  T
Q  131 aagaatagtcaatattttaaatacattttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    || |||||||  |||||||| |   |||||| |||||||  || ||||||| ||| |||||||||  |||||||||  |||||  | |||||||||||||    
T  39340868 aaaaatagtccctattttaatt--tttttacaaaaaatgtgtacttttagtcctccaaaatagtcattataaaatgaaaatagaaagtaaaagtgaataa 39340965  T
Q  230 -attttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
      |||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  39340966 ttttttttgtagagactaaacttgaaagcttgtaattttata-gggattaaaaacatatttaa 39341027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 83 - 259
Target Start/End: Complemental strand, 28769625 - 28769448
Alignment:
Q  83 tataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttaca-aaaatggatatttttagtt 181  Q
    |||||||||||| |||| |||||  |||| || |||||||||||||||||||||||||  ||||||||| || ||||||| ||||| |||| ||||| |     
T  28769625 tataaaattttaatggtgatttttgtcctccataatattgtagtttgtaagaatagtctttattttaaaaactttttacagaaaattgatacttttaatc 28769526  T
Q  182 ctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagctt 259  Q
    ||| |||||||||| |||||||||| ||||  || |||||||||||||||||||| |||||| |||||||||||||||    
T  28769525 ctccaaaatagtccttataaaatgcaaataaggactaaaagtgaataaattttttatagggattaaacttgaaagctt 28769448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 291
Target Start/End: Original strand, 20314885 - 20315143
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    |||||||||  |||||||||||||||| ||| ||||||| || ||||  || |||||||||||| ||| ||||||| |||| || ||||||| | |||||    
T  20314885 gttaaatatgcttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggcaattttagtcctccataatattgaattttgt 20314984  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaa 230  Q
    || |||||||  |||||| || |  |||||||||||    |||  ||||| ||| ||||| ||||||||||||||  ||||| || ||||||||||||||    
T  20314985 aataatagtctctattttgaaaattttttacaaaaaatt-tatgcttagtactccaaaattgtccctataaaatgtaaatagggactaaaagtgaataaa 20315083  T
Q  231 ttttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||| ||| ||||||||||||||| || ||||||| || | ||||||||||||||||||    
T  20315084 ttttttatagagactaaacttgaaagtttgtaattttgta-gtgactaaaaacatatttaa 20315143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 116 - 291
Target Start/End: Original strand, 44648123 - 44648296
Alignment:
Q  116 aatattgtagtttgtaagaatagtcaatattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcga 215  Q
    |||||||||||||||||| |||| |  |||||| || || |||||||||| || ||| ||||||| ||| ||||||||||||||||| | | ||||| ||    
T  44648123 aatattgtagtttgtaagtatagaccttattttgaaaactttttacaaaattg-atacttttagtcctcaaaaatagtccctataaagttcaaatagaga 44648221  T
Q  216 ttaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
     |||||||||||||  |||||||||||  |||||||||||| || |||||||||| ||||||||||| ||||||||    
T  44648222 ctaaaagtgaataagctttttgtaggggttaaacttgaaagtttgtaattttata-gggactaaaaaaatatttaa 44648296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 291
Target Start/End: Original strand, 20336778 - 20337034
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| ||| ||||||| || ||||  || |||||||||||| ||||||||||| |||| || ||||||| | |||||    
T  20336778 gttaaatatgtttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggtaattttagtcctccataatattgaattttgt 20336877  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaa 230  Q
    ||  ||||||  |||||| || | |||| |||||| |  ||| ||  |||  || ||||| |||||||||||||   |||||  | ||||||||||||||    
T  20336878 aattatagtccctattttgaaaaaattt-acaaaattttatactt--agtagtccaaaattgtccctataaaatataaataggaactaaaagtgaataaa 20336974  T
Q  231 ttttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||| ||||| |||||||| |||| || ||||||| || ||||||||||||||||||||    
T  20336975 ttttttataggggctaaacttaaaagtttgtaattttgta-gggactaaaaacatatttaa 20337034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 52423123 - 52423252
Alignment:
Q  162 aaaaatggata-tttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttc 260  Q
    ||||||||||| |||||||| ||| || |||| ||||||||||||| ||||| |  ||||||| |||||||||||| |||||| ||||| ||||| |||     
T  52423123 aaaaatggatactttttagtcctccaatatagcccctataaaatgcaaataggggctaaaagtaaataaattttttatagggattaaacatgaaaactta 52423222  T
Q  261 taattttataggggactaaaaacatatttaa 291  Q
    ||||||| || ||||||||||||||||||||    
T  52423223 taattttgta-gggactaaaaacatatttaa 52423252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 286
Target Start/End: Original strand, 17268853 - 17269084
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaataca 155  Q
    |||| |||||| ||||||| ||  || |||| ||||||| || |||||||| || |  | | ||||||||||||||| ||||||| |||||||| | |||    
T  17268853 aaattacgagtgtttaagtatagtccatatacaattttaatgataattttagtcttctatattattgtagtttgtaaaaatagtctatattttataaaca 17268952  T
Q  156 ttttacaaaaa--tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttga 253  Q
    ||||| |||||  || ||| ||||| ||||  |||||| ||| |||||||||  ||||| ||||||||   | ||| ||||||||||| ||||||||| |    
T  17268953 ttttataaaaaaatgaatacttttaattctaaaaaataatccatataaaatgaaaatagagattaaaaacaactaatttttttgtaggaactaaacttta 17269052  T
Q  254 aagcttctaattttataggggactaaaaacata 286  Q
    |||||| |||| || || || ||||||||||||    
T  17269053 aagcttataatattgta-ggtactaaaaacata 17269084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 23565331 - 23565270
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    ||||||||||  |||||||||||||| |  |||||||||||| |||||||||||||||||||    
T  23565331 tacaaatcacatgtttttaagtttaatcgatataaaattttaatggtaattttaatccttca 23565270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 38673406 - 38673254
Alignment:
Q  80 ccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac--aaaaatggatattttt 177  Q
    ||||||||||||||| || |||||||||||   || ||||||||| |||||||||||| | | | |||  || || ||||||  |||||| |||| ||||    
T  38673406 ccctataaaattttaatgataattttaatcaaccataatattgtaatttgtaagaatatttactgtttgtaaaaccttttacaaaaaaatagatactttt 38673307  T
Q  178 agttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaa 230  Q
    ||| ||| ||||||||||| |||||||   | ||| || ||||||||||||||    
T  38673306 agtcctccaaaatagtccccataaaatataagtagagactaaaagtgaataaa 38673254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 16876437 - 16876501
Alignment:
Q  87 aaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaa 151  Q
    |||||||| | ||||||||| |||| || |||||||||||||||||||||||||  |||||||||    
T  16876437 aaattttaattgtaattttagtcctccataatattgtagtttgtaagaatagtccctattttaaa 16876501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 22853489 - 22853369
Alignment:
Q  85 taaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttagttct 183  Q
    |||||||||| ||||||||||| |||| || |||||| || ||||||| |||||||  ||||||||| |  || ||| |||||| |||| ||||| | ||    
T  22853489 taaaattttaatggtaattttagtcctccataatattttaatttgtaaaaatagtccttattttaaaaaatttatactaaaaatagatacttttaatcct 22853390  T
Q  184 ctaaaatagtccctataaaat 204  Q
     ||||||||| ||||||||||    
T  22853389 ttaaaatagttcctataaaat 22853369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 292
Target Start/End: Original strand, 41695496 - 41695605
Alignment:
Q  182 ctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaa 281  Q
    |||||||| |||||  | ||||||| | ||| || |||| |||||||||||| |||  | || ||||||| ||| ||| |||||||||| ||||||||||    
T  41695496 ctctaaaacagtcctcaaaaaatgcaactagagactaaatgtgaataaatttgttgcggagattaaacttaaaatcttgtaattttata-gggactaaaa 41695594  T
Q  282 acatatttaat 292  Q
    |||||||||||    
T  41695595 acatatttaat 41695605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 45743779 - 45743891
Alignment:
Q  83 tataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttagtt 181  Q
    |||||||||||| | |||| |||| ||||| | | || |||||||||||||||| |||  ||||||||| || |||||| ||||||||| | |||| ||     
T  45743779 tataaaattttaatagtaactttagtcctttatagtagtgtagtttgtaagaatggtccctattttaaaaactttttacaaaaaatggacactttttgtc 45743878  T
Q  182 ctctaaaatagtc 194  Q
    ||| |||||||||    
T  45743879 ctccaaaatagtc 45743891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 52423012 - 52423080
Alignment:
Q  39 atatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaatttta 106  Q
    |||| ||||||||||||||| ||||||||||| |||||||  ||||||||| ||| | |||||||||||    
T  52423012 atatgtttagtccctacaaaatcacgagttttcaagtttagtccctataaagtttcaatggtaatttta 52423080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 13899511 - 13899558
Alignment:
Q  81 cctataaaattttagtggtaattttaatccttcaaaatattgtagttt 128  Q
    |||||||||||||| ||||||||||| |||| || |||||||||||||    
T  13899511 cctataaaattttaatggtaattttagtcctccataatattgtagttt 13899558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 16876079 - 16876140
Alignment:
Q  32 gttaaatatatttttagtccctacaaatcacgagtttttaagtttaaaccctataaaatttta 94  Q
    ||||||||| ||||||||||| | ||||||||| |||| |||||||  |||||||||||||||    
T  16876079 gttaaatatgtttttagtcccca-aaatcacgatttttcaagtttagtccctataaaatttta 16876140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 18085416 - 18085356
Alignment:
Q  64 agtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgta 124  Q
    ||||||||| ||||| ||||||||||||||| || | |||||| || |||| |||||||||    
T  18085416 agtttttaaatttaatccctataaaattttaatgattattttagtcattcataatattgta 18085356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 32 - 266
Target Start/End: Original strand, 12596851 - 12597087
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||| ||||||| |||  ||||||||||||||  ||||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  12596851 gttaaatatgtttttagtctctacaaaatcataagtttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgt 12596950  T
Q  131 aagaatagtcaatattttaaatacattttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    || | |||||  |||||| || ||||||||| |||||||||||| |||||| ||| ||||||||||||||||||||| ||||| || |||| ||||||||    
T  12596951 aaaattagtctctattttgaaaacattttacaaaaaatggatatatttagtcctccaaaatagtccctataaaatgcaaatagggactaaacgtgaataa 12597050  T
Q  230 attttttgtagggactaaacttgaaagcttctaattt 266  Q
    |   ||||||||||||| |||||||||||| ||||||    
T  12597051 aaaatttgtagggactatacttgaaagcttgtaattt 12597087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 56 - 291
Target Start/End: Complemental strand, 10467630 - 10467394
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaataca 155  Q
    ||||||| | ||||||||||||  || |||||||||||| |||||||||||||||| || |||||||||  ||||||||||||||  |||||| || ||     
T  10467630 aaatcacaaatttttaagtttattccttataaaattttaatggtaattttaatcctccataatattgtaacttgtaagaatagtccctattttgaaaact 10467531  T
Q  156 ttttacaaaaa--tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttga 253  Q
    |||||||||||  |||| | ||||||| ||| ||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||    
T  10467530 ttttacaaaaaaatggacacttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaaatgaataaattttttgtaaggactaaacttga 10467431  T
Q  254 aagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||| ||||||| || |||||| |||| ||||||||    
T  10467430 aagcttgtaatttttta-gggacttaaaatatatttaa 10467394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 26939039 - 26938777
Alignment:
Q  27 ttagtgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    |||| |||||||||  |||||||||||| ||| |||  |||||| |||||||  ||||||||||||||| ||||||||||| |||| || ||| | ||      
T  26939039 ttagggttaaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatttagt-- 26938942  T
Q  126 tttgtaagaatagtcaatattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtga 225  Q
    |||||||||||||||  |||||| || || ||||   |||||||| | ||||||| ||  |||||||||||| |||||||| ||||| || |||||||||    
T  26938941 tttgtaagaatagtccctattttgaaaacttttttataaaatggacacttttagtccttcaaaatagtccctttaaaatgcaaatagggactaaaagtga 26938842  T
Q  226 ataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||||||||||||||||| | ||||||| ||||||| || ||||||||||||||||||||    
T  26938841 ataaattttttgtagggactaaacataaaagcttgtaattttgta-gggactaaaaacatatttaa 26938777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 39344575 - 39344840
Alignment:
Q  27 ttagtgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    |||| |||||||||||||||||| | |||||| |||  | ||||||| || |  ||||||||||||||| |||||| |||| |||| || ||||||||||    
T  39344575 ttagggttaaatatatttttagttcatacaaaatcataaatttttaaattaagtccctataaaattttaatggtaactttagtcctccataatattgtag 39344674  T
Q  126 tttgtaagaatagtcaatattttaaatacattttacaaaaat-ggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtg 224  Q
    ||||||||||||||  ||||||| || || ||||| |||||| ||| | ||||||| ||| ||||||||| ||||||||||  ||||| || ||||||||    
T  39344675 tttgtaagaatagttcatattttgaaaaccttttaaaaaaattggacacttttagtcctccaaaatagtctctataaaatgtaaatagggactaaaagtg 39344774  T
Q  225 aataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||||| ||| ||| |||||| ||||||| |||||||  | ||||||||||||||||||||    
T  39344775 aataaattttttctagagaccaaacttaaaagcttgtaattttgca-gggactaaaaacatatttaa 39344840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 32 - 291
Target Start/End: Complemental strand, 42024156 - 42023897
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| | |||||||| |||||| |||||||||||| ||||||  ||| ||||||||||| || |||||||| |||| ||||||||||||||| ||    
T  42024156 gttaaatatgtgtttagtccttacaaaatcacgagtttttgagtttagtccccataaaattttaatgctaattttagtcctccaaaatattgtagtt-gt 42024058  T
Q  131 aagaatagtcaatattttaaatacattttacaaaa-atggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    || |||||||  ||||| |||| | |||||||||| ||| | | ||||||| ||| |||||||||| ||||||| || ||||| || ||||| |||||||    
T  42024057 aataatagtccctatttaaaattctttttacaaaatatgtacacttttagtcctccaaaatagtccatataaaaagcaaatagggactaaaaatgaataa 42023958  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    | |||||||| | |||||||||||||| || ||||||| || ||||||||||||||||||||    
T  42023957 aatttttgtatgtactaaacttgaaagtttgtaattttgta-gggactaaaaacatatttaa 42023897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 17219877 - 17219668
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagt--ttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagttt 128  Q
    ||||||||| ||||||||| ||||||| ||| ||| |||||||   |||  |||||| |||||||| ||||||||||| |||||| ||||||| ||||||    
T  17219877 gttaaatatgtttttagtctctacaaaatcatgagattttaagcgcttagtccctatgaaattttaatggtaattttagtccttctaaatattttagttt 17219778  T
Q  129 gtaagaatagtcaatattttaaatacattttacaaaaa--tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaa 226  Q
    |||| |||||||  |||||| || || || ||||||||  |||||||||||||| ||| |||||||||||| || | ||| ||||| || ||||||||||    
T  17219777 gtaaaaatagtccctattttgaaaactttatacaaaaaaatggatatttttagtcctccaaaatagtccctttacagtgcaaatagggactaaaagtgaa 17219678  T
Q  227 taaatttttt 236  Q
    ||||||||||    
T  17219677 taaatttttt 17219668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 291
Target Start/End: Original strand, 8026015 - 8026273
Alignment:
Q  33 ttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgta 131  Q
    |||||||| ||| ||||||||| ||| | || | |||| |||||||| | ||||||||||||| |||| ||| || |||| || ||| | ||||||||||    
T  8026015 ttaaatatgtttatagtccctataaaattacaaattttaaagtttaatctctataaaattttaatggtgattgtagtcctccataatttagtagtttgta 8026114  T
Q  132 agaatagtcaatattttaaatacat-tttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    |||||||||  ||||||||| | |  ||||| |||||| || | ||||||| ||| ||||  ||||||||||||||| ||||  || |||||||||||||    
T  8026115 agaatagtccctattttaaaaaaaaatttacgaaaaattgacacttttagtactccaaaa--gtccctataaaatgcaaataaagagtaaaagtgaataa 8026212  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||||| |||||||||||||| ||| ||| ||||||| || ||||||||| ||||||||||    
T  8026213 attttttatagggactaaacttaaaaacttataattttgta-gggactaaatacatatttaa 8026273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 24916208 - 24916034
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||||||| || ||| ||| |||||||||||||||  ||||||||||||||| ||||||||||  |||| ||||||| ||||||||||    
T  24916208 gttaaatatgtttttagtccatataaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttcgtcctccaaaata-tgtagtttgt 24916110  T
Q  131 aagaatagtcaatattttaaatacatttta-caaaaatggatatttttagttctctaaaatagtccctataaaatgc 206  Q
    || |||||||  ||||||  | || |||||  ||||||||||||||||||| ||| |||||||| ||||||||||||    
T  24916109 aaaaatagtc-ctattttggaaactttttagaaaaaatggatatttttagtcctccaaaatagttcctataaaatgc 24916034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 32796980 - 32797135
Alignment:
Q  81 cctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttag 179  Q
    |||||||| ||||| | ||||||||| ||||  ||| ||||||||||||||||||||||| |||||||||| || |||||| |||||| |||| |||| |    
T  32796980 cctataaatttttaatagtaattttagtcctctaaagtattgtagtttgtaagaatagtccatattttaaaaactttttacaaaaaatagatacttttgg 32797079  T
Q  180 ttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttt 235  Q
    | ||| |||||||||| |||||||||| | ||| || |||||||||||||| ||||    
T  32797080 tcctccaaaatagtccttataaaatgcaattagggactaaaagtgaataaaatttt 32797135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 17153535 - 17153735
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||| |||  |||||| |||||||| ||||||||||| |||| |||||||||  |||||||    
T  17153535 gttaaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttgt 17153634  T
Q  131 aagaatagtcaatatttt---aaatacat-tttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaa 226  Q
     | |||||||  ||||||   || || || |  | ||||||||||| ||||||| ||| || ||||||||| |||||||| ||||| || ||||||||||    
T  17153635 taaaatagtccctattttgagaactatatatacaaaaaaatggatacttttagtcctccaagatagtccctctaaaatgcaaatagggactaaaagtgaa 17153734  T
Q  227 t 227  Q
    |    
T  17153735 t 17153735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 33038248 - 33038408
Alignment:
Q  67 ttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttaca-aaa 165  Q
    |||||||||||   ||||| |||||||| ||  |||||||||||| || ||||||| ||||||||||||||||   ||||||||| || ||||||| |||    
T  33038248 ttttaagtttagttcctattaaattttaatgaaaattttaatcctccataatattgcagtttgtaagaatagttcctattttaaaaactttttacagaaa 33038347  T
Q  166 atggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaat 227  Q
    ||||||| ||||||||||| || |||||||||||||||| | ||||| || |||||| ||||    
T  33038348 atggatacttttagttctc-aagatagtccctataaaattcaaatagggactaaaagcgaat 33038408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 291
Target Start/End: Complemental strand, 35055075 - 35054941
Alignment:
Q  156 ttttacaaaaatggatatttttagttctctaaaatagtccctat-aaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaa 254  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||| | ||  || ||||| |||||||| |||||||||| ||||||||||||    
T  35055075 ttttacaaaaatgggtatttttagttctccaaaatagtccctataaaaatgcaattaaggactaaaaatgaataaa-tttttgtaggaactaaacttgaa 35054977  T
Q  255 agcttctaattttataggggactaaaaacatatttaa 291  Q
    | ||| ||||||| ||  ||||| |||||||||||||    
T  35054976 aacttgtaattttgta-aggactgaaaacatatttaa 35054941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 283
Target Start/End: Original strand, 16483868 - 16484017
Alignment:
Q  134 aatagtcaatattttaaatacattttacaaaaat-ggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaatt 232  Q
    |||||||  |||||| || || ||| |||||||| |||||||||||||  || ||||||||| || |||||||| |||||  | |||||||||||| | |    
T  16483868 aatagtccctattttgaaaacttttaacaaaaattggatatttttagtcatccaaaatagtctctgtaaaatgcaaataggaactaaaagtgaatacaat 16483967  T
Q  233 ttttgtagggactaaacttgaaagcttctaattttataggggactaaaaac 283  Q
    |||| || ||||||||||||||| ||| |||||||||| ||||||||||||    
T  16483968 ttttataaggactaaacttgaaaacttgtaattttata-gggactaaaaac 16484017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 16483745 - 16483849
Alignment:
Q  36 aatatatttttagtccctaca-aatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaaga 134  Q
    ||||| |||| | |||||||| ||||| |||||||||||||||  |||| |||||||||| ||||||||||| | ||||||||||||||||||||||| |    
T  16483745 aatatgttttcaatccctacagaatcatgagtttttaagtttagtccctgtaaaattttaatggtaattttagt-cttcaaaatattgtagtttgtaaaa 16483843  T
Q  135 atagtc 140  Q
    ||||||    
T  16483844 atagtc 16483849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 17157148 - 17156948
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| ||| || |||||||  |||  |||||| |||||||| ||||||||||| |||| ||||||||| ||||||||    
T  17157148 gttaaatatgtttttagtccctacaaaatcatgattttttaaacttagtccctatgaaattttaatggtaattttagtcctccaaaatattttagtttgt 17157049  T
Q  131 aagaatagtcaatattttaaatac-at-tttac--aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaa 226  Q
     | ||||| |  |||||| || || || | |||  ||||||||||| ||||||| ||| || ||| ||||| |||||||| ||||| || ||| ||||||    
T  17157048 taaaatagcccctattttgaaaactatatatacaaaaaaatggatacttttagtcctccaagataatccctttaaaatgcaaatagggactaagagtgaa 17156949  T
Q  227 t 227  Q
    |    
T  17156948 t 17156948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 291
Target Start/End: Complemental strand, 24292351 - 24292091
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||| | ||||||||||||| ||| |||| || ||| |||||||  |||||| |||||||| | ||||||||| ||||||| || ||||  ||||||    
T  24292351 gttaaatgtgtttttagtccctaaaaaatcacaagctttcaagtttagtccctattaaattttaattgtaattttagtccttcataaaattgatgtttgt 24292252  T
Q  131 aagaatagtcaatattttaaatacatttta-caaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    ||||| ||||  |||||||||    |||||  ||||||||||| ||||||| ||| |||||||||||| |||||| | ||||| || | ||| ||| ||     
T  24292251 aagaacagtccctattttaaaagatttttataaaaaatggatacttttagtcctc-aaaatagtccctgtaaaatacaaatagggactgaaaatgagtac 24292153  T
Q  230 attt--tttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||  ||||| | ||||||| | ||||| || | |||||||| ||||||||||| ||||||||    
T  24292152 attttatttgt-gcgactaaattcgaaagtttgtgattttata-gggactaaaaatatatttaa 24292091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 26938602 - 26938539
Alignment:
Q  227 taaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||||||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||||    
T  26938602 taaattttttgtagggactaaacttaaaagcttgtaattttgta-gggactaaaaacatatttaa 26938539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 9226788 - 9226680
Alignment:
Q  32 gttaaatatatttttagtccctacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgta 131  Q
    |||||||||||||||| |  |||||||||| ||| |||||||||||  | |||| |||||||| ||  ||||||| ||| ||||||||||  |||||| |    
T  9226788 gttaaatatatttttaatatctacaaatcatgagcttttaagtttattcactattaaattttaatgacaattttagtccatcaaaatattacagtttgaa 9226689  T
Q  132 agaatagtc 140  Q
    |||||||||    
T  9226688 agaatagtc 9226680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 26938773 - 26938666
Alignment:
Q  34 taaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaa 132  Q
    |||||||  |||||||||||| ||| |||  |||||| |||||||  ||||||||||||||| ||||||||||  |||| || ||| | |||||||||||    
T  26938773 taaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaatttttgtcctccataatttagtagtttgtaa 26938674  T
Q  133 gaatagtc 140  Q
    ||||||||    
T  26938673 gaatagtc 26938666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 33695214 - 33695339
Alignment:
Q  127 ttgtaagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtga 225  Q
    ||||||||||||||  |||||| || | |||||||||||| || ||||||||| | ||| ||||||||| |||||||||   ||||  |||||||| |||    
T  33695214 ttgtaagaatagtctttattttgaaaagattttacaaaaactgaatatttttattcctccaaaatagtctctataaaatataaataaagattaaaaatga 33695313  T
Q  226 ataaattttttgtagggactaaactt 251  Q
    |||||  |||| ||  ||||||||||    
T  33695314 ataaaacttttctatagactaaactt 33695339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 35865889 - 35865950
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    |||||||||| ||||||||||||||     |||||||||||| |||||||||||||||||||    
T  35865889 tacaaatcacaagtttttaagtttagttgatataaaattttaatggtaattttaatccttca 35865950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 15966448 - 15966564
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaataca 155  Q
    |||||| ||||||| |||||||    |||| |||||||| ||||| ||||| || |||| | ||||| | ||||||||||||||| |||||| ||| |      
T  15966448 aaatcatgagttttcaagtttatttgctattaaattttaatggtacttttagtctttcatactattgcattttgtaagaatagtctatatttaaaaaagt 15966547  T
Q  156 ttttacaaaaatggata 172  Q
    ||||| |||||||||||    
T  15966548 ttttaaaaaaatggata 15966564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 41828013 - 41828072
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatcctt 112  Q
    |||||||||  ||||||||||||||  |  |||||||||||| |||||||||||||||||    
T  41828013 tacaaatcataagtttttaagtttagtcgatataaaattttaatggtaattttaatcctt 41828072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 2827176 - 2827225
Alignment:
Q  241 ggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||||||||| |||||||| ||||||||| ||||| ||||||||||||||    
T  2827176 ggactaaacttaaaagcttcaaattttata-gggaccaaaaacatatttaa 2827225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 26938976 - 26939033
Alignment:
Q  233 ttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||| |||||||||||||||||| ||| | |||||||| |||||||||| |||||||||    
T  26938976 ttttatagggactaaacttgaaaacttatgattttata-gggactaaaagcatatttaa 26939033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 27546031 - 27546073
Alignment:
Q  225 aataaattttttgtagggactaaacttgaaagcttctaatttt 267  Q
    |||||||||||||||  |||||||||||||||||| |||||||    
T  27546031 aataaattttttgtatagactaaacttgaaagcttataatttt 27546073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 2415069 - 2415121
Alignment:
Q  238 tagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||| |||||||| ||||||| ||||||| ||||| |||||||||||||||||    
T  2415069 taggggctaaacttaaaagcttataattttgtaggg-actaaaaacatatttaa 2415121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 24292298 - 24292350
Alignment:
Q  238 tagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||||||||||||||| | ||||| || ||||||||||||| ||||||    
T  24292298 tagggactaaacttgaaagcttgtgatttttta-gggactaaaaacacatttaa 24292350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 26938717 - 26938773
Alignment:
Q  233 ttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatattta 290  Q
    |||| |||||||||||||||||| ||| | |||||||| |||||||||| ||||||||    
T  26938717 ttttatagggactaaacttgaaaacttatgattttata-gggactaaaagcatattta 26938773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 8052207 - 8052259
Alignment:
Q  238 tagggactaaacttgaaagcttctaattttataggggactaaaaacatattta 290  Q
    |||||| |||| || ||||||| ||||||| ||||| ||||||||||||||||    
T  8052207 tagggagtaaatttaaaagcttgtaattttgtagggaactaaaaacatattta 8052259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 12133654 - 12133686
Alignment:
Q  170 atatttttagttctctaaaatagtccctataaa 202  Q
    |||||||||||||| ||||||||||||||||||    
T  12133654 atatttttagttctttaaaatagtccctataaa 12133686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 291
Target Start/End: Complemental strand, 17094 - 16835
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||| ||| ||||||||||| | |||||| ||||||||||||||| ||||||||||| |||| |||||||| | | |||||    
T  17094 gttaaatatgtttttagtccctataaaatcacgagttttcaggtttaatccctataaaattttaatggtaattttagtcctacaaaatatagcaatttgt 16995  T
Q  131 aagaatagtcaatattttaaatacattttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    ||||||||||  |||||| || || |||||| ||||||| |||  |||||| ||||||||||||||||||||||| | ||||| || |||||||||||||    
T  16994 aagaatagtccctattttgaaaacgttttactaaaaatgtatacctttagtcctctaaaatagtccctataaaatacaaatagggactaaaagtgaataa 16895  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |  ||| ||| |||||||||||||||| |  |||||||||| ||||||||||||||||||||    
T  16894 aaatttggta-ggactaaacttgaaagttggtaattttata-gggactaaaaacatatttaa 16835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 39293281 - 39293061
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||| ||| |||||| |||||| ||| || |||||| ||||||||||||||| ||||||||||| ||||  ||||||||||| |||||    
T  39293281 gttaaatatgtttttaatccatacaaaatcacgaatttctaggtttaatccctataaaattttaatggtaattttagtcctctaaaatattgtaatttgt 39293182  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaa 230  Q
    || ||||||   ||||||||| |||||||  ||||||||||||||||| | ||| |||||||||| |||||||||  ||||| || |||||||||||||     
T  39293181 aataatagttcctattttaaaaacatttttaaaaaatggatatttttattcctccaaaatagtccatataaaatgaaaatagggactaaaagtgaataat 39293082  T
Q  231 ttttttgtagggactaaactt 251  Q
    |||||||||||||||||||||    
T  39293081 ttttttgtagggactaaactt 39293061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 291
Target Start/End: Complemental strand, 27694660 - 27694425
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaataca 155  Q
    |||||| ||||||||||||||||  ||| | ||||||||  ||||||||||||||| ||||||||||| ||| |||| | | |||  ||||||||| ||     
T  27694660 aaatcatgagtttttaagtttaattcctgtcaaattttaaaggtaattttaatcctccaaaatattgtggttcgtaaaagtggtccctattttaaaaact 27694561  T
Q  156 ttttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaa 254  Q
    ||||||||||| | |||| ||||||| ||   ||||| |||||||||||||  ||||| ||||||||||||||||||||||||||| || ||||||||||    
T  27694560 ttttacaaaaaatagataattttagtccttctaaataatccctataaaatgtgaatagggattaaaagtgaataaattttttgtagagattaaacttgaa 27694461  T
Q  255 agcttctaattttataggggactaaaaacatatttaa 291  Q
    |  || |||||||||| ||||||||||||||||||||    
T  27694460 aatttgtaattttata-gggactaaaaacatatttaa 27694425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 290
Target Start/End: Original strand, 34904003 - 34904264
Alignment:
Q  27 ttagtgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    |||| ||||||||| ||||||||||||||||| |||| ||||||||||||||  |||| ||||||| || |  |||||||| | ||||| ||||||||||    
T  34904003 ttagggttaaatatgtttttagtccctacaaaatcacaagtttttaagtttagtccctgtaaaattgtaataataattttagttcttcataatattgtag 34904102  T
Q  126 tttgtaagaatagtcaatattttaaatacattttacaaa-aatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtg 224  Q
    |||||||||||| ||  |||||| || || ||||||||| |||||||| ||||||| || ||||||||||| | |||||||| ||||| || |||| |      
T  34904103 tttgtaagaataatccctattttgaaaactttttacaaagaatggatacttttagtcctataaaatagtccttttaaaatgcaaatagggactaaatgca 34904202  T
Q  225 aataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatattta 290  Q
    ||||| ||||||| | ||||||||||||||||||| ||||||||||   |||| ||||||||||||    
T  34904203 aataagttttttg-atggactaaacttgaaagcttgtaattttata---gactgaaaacatattta 34904264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 291
Target Start/End: Original strand, 8794573 - 8794828
Alignment:
Q  31 tgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttg 129  Q
    |||||| ||| |||| |||||||||||| |||| | |||| |||||||  || |||||||||||| ||||||||||| ||| |   ||||||||| || |    
T  8794573 tgttaagtatgttttcagtccctacaaaatcacaaattttcaagtttagtcc-tataaaattttaatggtaattttagtccat---aatattgtaattcg 8794668  T
Q  130 taagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaata 228  Q
    |||||||||||  ||||||||| || ||||||||||| |||| |||||||||  || |||||||  |||||||||||| ||||| || ||||||||||||    
T  8794669 taagaatagtccctattttaaaaactttttacaaaaaatggacatttttagtcatccaaaatagctcctataaaatgcaaatagggactaaaagtgaata 8794768  T
Q  229 aattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    || ||||||||  ||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  8794769 aaatttttgta--gactaaacttgaaagcttgcaattttata-gggactaaaaacatatttaa 8794828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 291
Target Start/End: Original strand, 10077627 - 10077860
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaataca 155  Q
    |||||| ||||||| |||||||  ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||  |||||| || ||     
T  10077627 aaatcatgagttttcaagtttagtccctataaa-ttttaatggtaattttaatccttcataatattgtagtttgtaataatagtccctattttgaaaact 10077725  T
Q  156 ttttac---aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttg 252  Q
    ||||||   ||||||||||||||||||| ||| ||||||||||| ||||||| | ||||  || ||||||||||||||   |   ||||||||| |||||    
T  10077726 ttttacaaaaaaaatggatatttttagtcctccaaaatagtcccaataaaatacaaatatggactaaaagtgaataaaaaat---tagggactacacttg 10077822  T
Q  253 aaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||| || |||||||| | ||||||||||||||||||||    
T  10077823 aaagtttataatttta-aagggactaaaaacatatttaa 10077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 31994894 - 31994652
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||| ||| ||||||||||||||||| |||| | ||||||||||||| |||| |||||||||| | ||||||||| | || || ||||||||| |||||    
T  31994894 gttaagtatgtttttagtccctacaaaatcacaaatttttaagtttaatccctttaaaattttaatagtaattttagttctccataatattgtaatttgt 31994795  T
Q  131 aagaatagtcaatattttaaatac-attttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    ||||||||||   ||||| || ||  ||||  ||||||||| | || || | ||| ||||||||||||||||||||| ||| | |||||||| |||||||    
T  31994794 aagaatagtcccaattttgaaaactttttttaaaaaatggacacttgtaatcctccaaaatagtccctataaaatgcaaattgggattaaaaatgaataa 31994695  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttatagg 272  Q
    ||||||||||| || || |||| ||||||| ||||||| ||||    
T  31994694 attttttgtagagattatacttaaaagcttgtaattttgtagg 31994652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 32 - 291
Target Start/End: Complemental strand, 24490723 - 24490460
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| | | | |||||||||||||  | ||||||||||||| | ||||||||| ||||  | |||||||||||||||    
T  24490723 gttaaatatgtttttagtccctacaaaattatgtgtttttaagtttagtctctataaaattttaatagtaattttagtcctctacaatattgtagtttgt 24490624  T
Q  131 aagaatagtcaatattttaaatacattttac-----aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtga 225  Q
    ||||||| ||  |||||| | |   ||||       ||||||||||| ||||||| ||||||||||||| ||||||||||| ||||| || |||||||||    
T  24490623 aagaataatccctattttgattttttttttttaataaaaaatggatacttttagtcctctaaaatagtctctataaaatgcaaatagggactaaaagtga 24490524  T
Q  226 ataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    || |||||||| || | ||||||||| ||||||| |||||||| | || ||||||||| |||||||    
T  24490523 at-aattttttttaagaactaaacttaaaagcttgtaattttaca-ggaactaaaaacgtatttaa 24490460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 29242732 - 29242495
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||  ||||||||||||||||| | | ||||||| |||||||  ||||||||||||||| ||||||||||| ||||  || ||||| ||||||||    
T  29242732 gttaaatacgtttttagtccctacaaaattaggagttttcaagtttagtccctataaaattttaatggtaattttagtcctcgaagatattatagtttgt 29242633  T
Q  131 aagaatagtcaatattttaaatacattttac-aaaaatggatatttttagt---tctctaaaatagtccctataaaatgccaatagcgattaaaagtgaa 226  Q
    ||||||||||  |||||| |   | |||||| |||||| |||| |||||||    | | | ||||||||||||||||||| ||||| |  ||||||||||    
T  29242632 aagaatagtccctattttga--cctttttacaaaaaatcgatacttttagtcccccacaataatagtccctataaaatgcaaataggggctaaaagtgaa 29242535  T
Q  227 taaattttttgtagggactaaacttgaaagcttctaattt 266  Q
    ||| ||||||||| ||||||||||| ||||||| ||||||    
T  29242534 taatttttttgtaaggactaaacttaaaagcttgtaattt 29242495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 35954222 - 35954444
Alignment:
Q  32 gttaaatatatttttagtccctacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgta 131  Q
    ||||||||| ||||||||||||| ||||||| |||||| |||||||  |||||| |||||||| ||||||||||| ||||  | ||||||||||||||||    
T  35954222 gttaaatatgtttttagtccctataaatcacaagttttaaagtttagtccctattaaattttaatggtaattttagtcctcaataatattgtagtttgta 35954321  T
Q  132 agaatagtcaatattttaaatacatttta--caaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    |||||||||  |||| ||||  | |||||   |||| || | | ||||||| ||| ||||||| |||||||||||   | ||| || |||||||||||||    
T  35954322 agaatagtctctattataaaatctttttaataaaaattgaaaacttttagtcctccaaaatagcccctataaaatataactagggactaaaagtgaataa 35954421  T
Q  230 attttttgtagggactaaacttg 252  Q
    |    ||||||||||||||||||    
T  35954422 aaaaattgtagggactaaacttg 35954444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 6191127 - 6191296
Alignment:
Q  71 aagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaatgg 169  Q
    |||||||  ||||||||||||||| ||||||||||| |||| || ||||||||| |||||||||||||||  |||||| || || |||||| |||||||     
T  6191127 aagtttagtccctataaaattttaatggtaattttagtcctccataatattgtactttgtaagaatagtccgtattttgaaaactttttacaaaaaatga 6191226  T
Q  170 atatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtag 240  Q
    |||| |||||||||| ||||||||  ||||||||| | ||||   | ||||||||||||| ||||||||||    
T  6191227 atatgtttagttctccaaaatagt-tctataaaatacaaataagaactaaaagtgaataagttttttgtag 6191296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 30641196 - 30640995
Alignment:
Q  32 gttaaatatatttttagtccctacaa-atcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||||||||||||| |||| ||||||||||| |||  || ||| |||||||| |||||  |||| |||| | ||||||| ||||||||    
T  30641196 gttaaatatgtttttagtccctacaatatcatgagtttttaagcttagtccatatgaaattttaatggtatatttagtcctccgaaatattttagtttgt 30641097  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaa--tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaata 228  Q
    || | |||||  |||||| || || || ||||||||  |||||| |||| || ||| |||||||||||| |||||||| ||||| || ||||||||||||    
T  30641096 aaaagtagtccctattttgaaaactttatacaaaaaaatggatacttttggtcctccaaaatagtccctttaaaatgcaaatagggactaaaagtgaata 30640997  T
Q  229 aa 230  Q
    ||    
T  30640996 aa 30640995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 855587 - 855749
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaataca 155  Q
    |||||| |||||||||||||||  ||||||||||||||| ||||||||||| ||||     ||||||||||||||| |||||||| ||||||| || ||     
T  855587 aaatcatgagtttttaagtttagtccctataaaattttaatggtaattttagtcctcggtgatattgtagtttgtaggaatagtccatattttgaaaact 855686  T
Q  156 ttttac-aaaaatggatatttttagttct-----ctaaaatagtccctataaaatgccaatag 212  Q
    |||||| ||||||| ||||||||||| ||     | ||||||||||||||||||||| |||||    
T  855687 ttttacaaaaaatgaatatttttagtcctccagaccaaaatagtccctataaaatgcaaatag 855749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 947162 - 947265
Alignment:
Q  171 tatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa-attttttgtagggactaaacttgaaagcttctaattttat 269  Q
    |||||||||| ||| ||||||||||||||||||| | ||||  ||||||||||| ||||  ||||||  || |||||||||||||||||  ||||||| |    
T  947162 tatttttagtcctccaaaatagtccctataaaattcgaataaggattaaaagtggataattttttttacagagactaaacttgaaagctcataattttgt 947261  T
Q  270 aggg 273  Q
    ||||    
T  947262 aggg 947265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 434657 - 434515
Alignment:
Q  66 tttttaagtttaaaccctataaaattttagtggtaattttaatccttca-aaatattgtagtttgtaagaatagtcaatattttaaatacattttacaaa 164  Q
    ||||||||||||  |  |||||||||||| |||| |||||| |||||   |||||||  ||||||||||||||||| || |||| || || ||||  |||    
T  434657 tttttaagtttagtcaatataaaattttaatggtgattttagtcctttgtaaatatttaagtttgtaagaatagtccatcttttcaaaactttttctaaa 434558  T
Q  165 aa-tggatatttttagttctctaaaatagtccctataaaatgc 206  Q
    || ||||||||||| || ||| |||||||| ||||||||||||    
T  434557 aaatggatatttttcgtcctccaaaatagttcctataaaatgc 434515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 41577437 - 41577498
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    ||||||||||  |||||||||||||| |  |||||||||||| |||||||||||||||||||    
T  41577437 tacaaatcacatgtttttaagtttaatcgatataaaattttaatggtaattttaatccttca 41577498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 43910161 - 43910242
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatcctt 112  Q
    |||||||||||||  |||||||||||| |||  |||||||||||||||  |||||||||||||| | ||||| |||||||||    
T  43910161 gttaaatatatttggagtccctacaaaatcataagtttttaagtttaattcctataaaattttaatagtaatattaatcctt 43910242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 37284353 - 37284290
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaatttta 94  Q
    |||||||||||||||||||| |||||| | | |||||||||||||||  |||||||||||||||    
T  37284353 gttaaatatatttttagtccttacaaaattatgagtttttaagtttagtccctataaaatttta 37284290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 1072124 - 1072058
Alignment:
Q  225 aataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaat 292  Q
    |||||| ||||||||| ||||| ||||||||| || ||||||| ||||| |||| |||||||||||||    
T  1072124 aataaaatttttgtagagactatacttgaaagtttataattttttaggg-actacaaacatatttaat 1072058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 36773985 - 36774162
Alignment:
Q  35 aaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaag 133  Q
    |||||| |||||||| |||||||| |||| |||||||| ||| |   ||||||| |||||| ||||||||||||||||     |||||||| |||||||     
T  36773985 aaatatgtttttagttcctacaaactcacaagtttttatgtt-agttcctataagattttaatggtaattttaatcctctgtgatattgtaatttgtaaa 36774083  T
Q  134 aa------tagtcaatattttaaatacattttacaaaa-atggatatttttagttctctaaaatagtccctataaaatg 205  Q
    ||      |||||  |||||| |||   |||||||||| ||||||||||||||||||  |||||||| |||||||||||    
T  36774084 aaaaaaaatagtccctattttgaatttcttttacaaaatatggatatttttagttcttcaaaatagttcctataaaatg 36774162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 29242674 - 29242731
Alignment:
Q  233 ttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||| |||||||||||||||||| || |||||||| || |||||||||||| |||||||    
T  29242674 ttttatagggactaaacttgaaaactcctaattttgta-gggactaaaaacgtatttaa 29242731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 10743064 - 10743125
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    |||||||||| |||||||||| |||  |  ||||||||||||  ||||||||||||||||||    
T  10743064 tacaaatcacaagtttttaagcttagtcgatataaaattttaacggtaattttaatccttca 10743125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 6191320 - 6191356
Alignment:
Q  231 ttttttgtagggactaaacttgaaagcttctaatttt 267  Q
    |||||||||| |||||||||||||||||| |||||||    
T  6191320 ttttttgtagtgactaaacttgaaagcttgtaatttt 6191356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 30632675 - 30632599
Alignment:
Q  64 agtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtc 140  Q
    ||||||||| ||||  | ||||||||||||| ||||||||||| || |  | ||||||||||||||||  |||||||    
T  30632675 agtttttaattttagtctctataaaattttaatggtaattttagtcttggataatattgtagtttgtacaaatagtc 30632599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 290
Target Start/End: Complemental strand, 16545580 - 16545322
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||| |||||||||| |   |||||||||||||||| ||||||||||||||| || ||| |||| |||| |||||||||||||||| |    
T  16545580 gttaaatatgtttttaatccctacaaaattttgagtttttaagtttaatccctataaaattttaatgataaatttactcctccaaaatattgtagttt-t 16545482  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    || ||| |||  |||||| || || || |||||||| |||||||||||||| ||| |||||||||| || ||||||| ||| |  | |||||||||||||    
T  16545481 aaaaatggtccctattttgaaaactttatacaaaaaatggatatttttagtcctccaaaatagtccttacaaaatgcaaattggtagtaaaagtgaataa 16545382  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatattta 290  Q
    ||||||||||  |||||||||| ||| ||| |||||||||| |||||||||||||||||||    
T  16545381 attttttgtacagactaaacttaaaaacttgtaattttata-gggactaaaaacatattta 16545322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 32 - 284
Target Start/End: Original strand, 20985925 - 20986179
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    |||| |||| |||||| | |||||||| |||||||||||||| ||||  ||||||||||||||| ||||||||||| || |  ||||||||||||||||     
T  20985925 gttagatatgtttttaattcctacaaaatcacgagtttttaaatttagtccctataaaattttaatggtaattttagtcttctaaaatattgtagtttgc 20986024  T
Q  131 aagaatagtcaatattttaaatacattttac---aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaat 227  Q
    ||||||||||  |||||| || || ||||||   |||||| |||| ||||||| ||| ||||||||||||||||||||| ||||  || ||||||| |||    
T  20986025 aagaatagtccctattttgaaaactttttacaaaaaaaatagatacttttagtcctccaaaatagtccctataaaatgcaaataaggactaaaagtaaat 20986124  T
Q  228 aaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaaca 284  Q
    ||||||||||||||||| |||||| |||  || ||| |||||| |||||||||||||    
T  20986125 aaattttttgtagggaccaaacttaaaattttgtaa-tttata-gggactaaaaaca 20986179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 33753135 - 33752871
Alignment:
Q  27 ttagtgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    |||| ||||||||| |||||||||| |||||| |||| |||||| |||||||  || |||||||||||| |||| ||||||  ||| || ||||||||||    
T  33753135 ttagggttaaatatgtttttagtcc-tacaaaatcacaagttttaaagtttagtccgtataaaattttaatggtgattttagccctccataatattgtag 33753037  T
Q  126 tttgtaagaatagtcaatattttaaatacatt-ttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagt 223  Q
    ||||||||||| |||| |||||| || || || ||||||||| || | | ||||| ||||| ||||||||||||||||||||  ||||  || |||||||    
T  33753036 tttgtaagaatggtcactattttgaa-actttattacaaaaaatgaacacttttacttctccaaaatagtccctataaaatgtaaataaggactaaaagt 33752938  T
Q  224 gaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||    ||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||    
T  33752937 gaataaaaaaattgtagggattaaactggaaagcttgtaattttata-gggactaaaaacatatttaa 33752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 291
Target Start/End: Original strand, 13392840 - 13393066
Alignment:
Q  64 agtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacatttt---a 160  Q
    |||||| |||||||  ||||||||| ||||| || |||||||| || | |||||||||||||||||||| |||||||  ||||||||| || ||||   |    
T  13392840 agttttaaagtttagtccctataaagttttaatgttaattttagtcatccaaaatattgtagtttgtaaaaatagtccctattttaaaaacttttttaca 13392939  T
Q  161 caaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttc 260  Q
     ||||||||||| ||||||||||| |||||||| | |||||||| |  |||| || |||||||||||   ||||||||||  ||||||||| ||| |||     
T  13392940 aaaaaatggataattttagttctccaaaatagttcatataaaatacatatagggactaaaagtgaatt--ttttttgtagaaactaaacttaaaaacttg 13393037  T
Q  261 taattttataggggactaaaaacatatttaa 291  Q
    |||||| ||||   |||||||||||||||||    
T  13393038 taattt-atagaa-actaaaaacatatttaa 13393066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 291
Target Start/End: Complemental strand, 29307753 - 29307513
Alignment:
Q  37 atatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaa 135  Q
    |||| ||| ||||||||||||| ||| |||||||||||||||  |||||||| |||||| | ||||||||| |||||||||||| ||||||||||||       
T  29307753 atatgtttctagtccctacaaaatcatgagtttttaagtttagtccctataagattttaattgtaattttagtccttcaaaatactgtagtttgtaa--- 29307657  T
Q  136 tagtcaatattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttt 235  Q
       | || | ||    ||||      |||||||||||| |||||| ||| ||||||||||||||||||||| ||||| || ||| ||| ||||||   ||    
T  29307656 ---tgaaaacttc---tacaa-----aaaaatggatatatttagtcctccaaaatagtccctataaaatgcaaatagggactaagagttaataaaaaatt 29307568  T
Q  236 tgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||||||||||||||  ||  || |||||||||| |||||| |||||||||||||    
T  29307567 tgtagggactaaacttttaaaattgtaattttata-gggacttaaaacatatttaa 29307513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 291
Target Start/End: Original strand, 29102861 - 29103099
Alignment:
Q  58 atcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacatt 157  Q
    |||| ||||||| |||||||  ||||||| ||||| | || |||||||| |||| ||||||||||||| ||  || |||||||  ||||||||| | |      
T  29102861 atcatgagttttcaagtttagtccctatacaatttaaatgataattttagtcctccaaaatattgtagctttcaaaaatagtccctattttaaaaaaaaa 29102960  T
Q  158 -ttacaaaaa-----tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaactt 251  Q
     |||||||||     | |||||||||||| ||| ||||||||  |||||||| || ||||  || ||||||||||||||||||||||| ||| |||||||    
T  29102961 attacaaaaaaaaaatagatatttttagtcctccaaaatagtatctataaaaagcaaataaggactaaaagtgaataaattttttgtatggattaaactt 29103060  T
Q  252 gaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||   | |||||||||| |||| ||||| |||||||||    
T  29103061 gaaaatatgtaattttata-gggattaaaagcatatttaa 29103099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 267
Target Start/End: Original strand, 3891482 - 3891676
Alignment:
Q  70 taagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttacaaaaatgg 169  Q
    ||||||||  ||||||||||||||| ||||| ||||| |||| |  ||||||||| |||| ||||||   |  ||||| ||| || |||||||||||| |    
T  3891482 taagtttagtccctataaaattttattggtagttttagtcctccgtaatattgtaatttgcaagaat---ctctatttaaaaaactttttacaaaaatag 3891578  T
Q  170 atatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaatttt 267  Q
    | ||||||| |  |  ||||||||| ||||||||| | ||||| |||||||||| |||||| |  |||||| || ||||||||||| ||| |||||||    
T  3891579 acatttttaatcttgcaaaatagtctctataaaatacaaatagggattaaaagtaaataaaataattgtagagattaaacttgaaaacttgtaatttt 3891676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 1444962 - 1445088
Alignment:
Q  33 ttaaatatatttttagtccct-acaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgta 131  Q
    |||||||| |||||||||| | | |||||||||||||| |||||||  | ||||||||||||   | ||||||||||||| || ||||||||||||| ||    
T  1444962 ttaaatatgtttttagtccttgaaaaatcacgagttttcaagtttagtctctataaaatttttaag-taattttaatcctccataatattgtagttttta 1445060  T
Q  132 agaatagtcaatattttaaatacatttt 159  Q
    ||||||||| || |||| ||||| ||||    
T  1445061 agaatagtccatgtttttaatacttttt 1445088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 50919415 - 50919286
Alignment:
Q  67 ttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacatttt--acaaa 164  Q
    |||||||||||  ||||||||||||||| ||||||||||| | |||||  ||| |||| ||||||| |||| || |||||||||| || ||||  | |||    
T  50919415 ttttaagtttagtccctataaaattttaatggtaattttagt-cttcatgataatgtaatttgtaaaaataatcgatattttaaaaactttttagaaaaa 50919317  T
Q  165 aatggatatttttagttctctaaaatagtcc 195  Q
    |||||| |  |||||||||| ||||||||||    
T  50919316 aatggacacatttagttctcaaaaatagtcc 50919286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 14941154 - 14941093
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    |||||||||| ||||||||||||||  |  |||||||||||| |||||||||||||||||||    
T  14941154 tacaaatcacaagtttttaagtttagtcgatataaaattttaatggtaattttaatccttca 14941093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 14951161 - 14951100
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    |||||||||| ||||||||||||||  |  |||||||||||| |||||||||||||||||||    
T  14951161 tacaaatcacaagtttttaagtttagtcgatataaaattttaatggtaattttaatccttca 14951100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 14955402 - 14955341
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    |||||||||| ||||||||||||||  |  |||||||||||| |||||||||||||||||||    
T  14955402 tacaaatcacaagtttttaagtttagtcgatataaaattttaatggtaattttaatccttca 14955341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 291
Target Start/End: Complemental strand, 23230894 - 23230794
Alignment:
Q  190 tagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatattt 289  Q
    |||||| |||||||||   |||| || ||||||||||||||  |||||||||||||||||||| ||  || ||||||| || | ||||||||||||||||    
T  23230894 tagtccttataaaatgtatatagtgactaaaagtgaataaaaattttgtagggactaaacttgtaaatttgtaattttgta-gagactaaaaacatattt 23230796  T
Q  290 aa 291  Q
    ||    
T  23230795 aa 23230794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 35218154 - 35218241
Alignment:
Q  186 aaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggg 273  Q
    ||||||||||||||||||||  ||||  || ||||||| ||||||  ||||||||| ||||| ||||||||||| | ||||| |||||    
T  35218154 aaaatagtccctataaaatgtaaataaagactaaaagtaaataaaaattttgtaggaactaagcttgaaagcttgttattttgtaggg 35218241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 15800839 - 15800900
Alignment:
Q  64 agtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    ||||||||||||||| ||||||||||||||| || | |||||| || |||| ||||||||||    
T  15800839 agtttttaagtttaatccctataaaattttaatgattattttagtcattcataatattgtag 15800900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 9312708 - 9312592
Alignment:
Q  35 aaatatatttttagtccctacaaatca-cgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaag 133  Q
    ||||||||||| ||||| ||||||  | ||||||||||||||||| ||||| ||||||||| |   ||||||| ||||| | |||||| || ||||| ||    
T  9312708 aaatatattttaagtccttacaaagtatcgagtttttaagtttaatccctacaaaattttaattaaaattttagtcctttataatattatattttgttag 9312609  T
Q  134 aatagtcaatattttaa 150  Q
    |||| ||  ||||||||    
T  9312608 aataatccttattttaa 9312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 35217918 - 35217988
Alignment:
Q  186 aaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagc 257  Q
    ||||||||| ||||||||||  || || || ||||| | |||||| ||||||||||||||||||||||||||    
T  35217918 aaaatagtctctataaaatgtaaaaagagactaaaaat-aataaaatttttgtagggactaaacttgaaagc 35217988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 50919275 - 50919220
Alignment:
Q  217 taaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttatagg 272  Q
    ||||| ||||||||||||||| | |||||||||||| |||||| ||||||| ||||    
T  50919275 taaaaatgaataaattttttgcatggactaaacttgcaagcttgtaattttgtagg 50919220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 23278642 - 23278534
Alignment:
Q  142 atattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagg 241  Q
    |||||||||| || |||||||||||   | |||||||||| || |||||||||||||||| |||| ||||| || | ||| | |||||||||| || ||     
T  23278642 atattttaaaaactttttacaaaaacttagatttttagttgtc-aaaatagtccctataatatgcaaatagagactcaaacttaataaattttgtggaga 23278544  T
Q  242 gactaaactt 251  Q
    ||||| ||||    
T  23278543 gactagactt 23278534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 25506711 - 25506593
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| | |||||| |||||||| |||||| |||| |||||||   ||||| || ||||| || || || || ||||| | |||||||||||||||    
T  25506711 gttaaatatgtgtttagttcctacaaaatcacga-ttttaaagtttagttcctattaa-ttttaatgttatttgtagtcctttataatattgtagtttgt 25506614  T
Q  131 aagaatagtcaatattttaaa 151  Q
    | |||||||| ||||||||||    
T  25506613 atgaatagtccatattttaaa 25506593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 37470983 - 37470903
Alignment:
Q  125 gtttgtaagaatagtcaatattttaaatacattttaca-aaaatggatatttttagttctctaaaatagtccctataaaat 204  Q
    |||||||||||||||   ||||| ||| || ||||||| |||||||||  ||||||| ||| ||||||||| |||||||||    
T  37470983 gtttgtaagaatagttcctatttgaaaaactttttacaaaaaatggatgcttttagtcctccaaaatagtctctataaaat 37470903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 253884 - 253657
Alignment:
Q  63 gagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac- 161  Q
    |||||||||||||||   | |||||||||||| | ||||||||| ||||| |||||||| ||||||||||| ||||||  |||||||||    ||||||     
T  253884 gagtttttaagtttagttcatataaaattttaatagtaattttagtcctttaaaatattatagtttgtaaggatagtctctattttaaa-cttttttaca 253786  T
Q  162 aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttct 261  Q
    ||||||||||| ||||| | ||| |||||||||||||||||||||  |||| |||||||| ||||||| |||||||||| ||||||| || ||||||| |    
T  253785 aaaaatggatacttttaatcctccaaaatagtccctataaaatgcagatagagattaaaaatgaataatttttttgtagagactaaatttaaaagcttgt 253686  T
Q  262 aattttataggggactaaaaacatatttaa 291  Q
    |||||| ||||||  |||| ||||||||||    
T  253685 aattttgtagggg-ttaaatacatatttaa 253657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 291
Target Start/End: Original strand, 24672267 - 24672524
Alignment:
Q  32 gttaaatatatttttagtccctacaaat-cacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| |||||| || |||||||| ||||| |||| |||||||  ||||||||||||||| ||||||||||| |||| || ||||||||| |||||    
T  24672267 gttaaatatgtttttaatctctacaaattcacgatttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtaatttgt 24672366  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaa 230  Q
    || |||||||  ||||||||| || ||  | |||||  |||||||||||| ||| |||||||||| | ||| |||| ||||| ||  || ||||||||||    
T  24672367 aataatagtctctattttaaaaac-ttaaaaaaaaaaagatatttttagtcctccaaaatagtccatttaagatgcaaatagggaccaatagtgaataaa 24672465  T
Q  231 ttttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
     ||||||||||||||||||| ||||| || |||||||  |  |||||||||||| ||||||    
T  24672466 atttttgtagggactaaactagaaagtttgtaattttgca--ggactaaaaacacatttaa 24672524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 17957027 - 17957267
Alignment:
Q  32 gttaaatatatttttagtccctaca-aatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||| | ||| | |||||||||||||||   || ||||||||||| | ||||||||| ||||  |||||||| ||||||||    
T  17957027 gttaaatatgtttttagtccctatataattatgagtttttaagtttagttccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgt 17957126  T
Q  131 aagaatagtcaatattttaaatacattttacaaaa-atggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    ||||||||||  | |||| || || |||||||||| |||||||  |||||| ||| ||||||||||||||||||| | ||||| || ||||| |||||||    
T  17957127 aagaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctccaaaatagtccctataaaatacaaatagggactaaaaatgaataa 17957226  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttata 270  Q
    |   ||| || ||||||||  ||||||||| ||||||||||    
T  17957227 aaaatttataaggactaaatgtgaaagcttgtaattttata 17957267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 32 - 273
Target Start/End: Original strand, 6197808 - 6198050
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||| ||| |||| | |||| |||||||  || |||||||||||| |||||| |||| |||| || ||| | |||||||||    
T  6197808 gttaaatatgtttttagtccctataaaatcacaa-ttttcaagtttagtccatataaaattttaatggtaaatttagtcctccataatttagtagtttgt 6197906  T
Q  131 aagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataa 229  Q
    ||||||||||  |||||| || || ||||| ||||| |||| | ||||| | ||| ||||||||||||||||||||  ||||  ||  ||||||||||||    
T  6197907 aagaatagtctctattttgaaaactttttagaaaaaatggacacttttattcctccaaaatagtccctataaaatgtaaataaggaccaaaagtgaataa 6198006  T
Q  230 attttttgtagggactaaacttgaaagcttctaattttataggg 273  Q
    | |||| |||||||||||||||||| |||| ||||||| |||||    
T  6198007 acttttcgtagggactaaacttgaaggcttgtaattttgtaggg 6198050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 66 - 267
Target Start/End: Complemental strand, 3336122 - 3335920
Alignment:
Q  66 tttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttacaa-a 164  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||| |||||| |||||||   |||| | || || |||||||| |    
T  3336122 tttttaagtttagaccctataaaattttagtggtaattttagtcctctaaaatattgtaatttgtatgaatagttgttattctgaaaactttttacaata 3336023  T
Q  165 aatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaat 264  Q
    |||| |||| | ||||  ||||||||||| ||||||| |||  | ||  ||  |||||||||||| ||| ||||||||||||||| ||||||||| ||||    
T  3336022 aatgaatatgtgtagtcttctaaaatagttcctataacatgaaagtaaagacgaaaagtgaataattttattgtagggactaaacatgaaagcttgtaat 3335923  T
Q  265 ttt 267  Q
    |||    
T  3335922 ttt 3335920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 3807061 - 3807320
Alignment:
Q  27 ttagtgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    |||| ||||||||| ||||||||||||| ||| |||  |||||||| |||||  | ||||||||||||| ||||||||||  |||| || ||| | ||||    
T  3807061 ttagagttaaatatgtttttagtccctataaaatcataagtttttatgtttagtctctataaaattttaatggtaattttcgtcctccataatttagtag 3807160  T
Q  126 tttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtg 224  Q
    |||||||||||||||  |||||| || || ||| || |||||| || | |||      || |||||||||| |||||||||  || |  ||  |||||||    
T  3807161 tttgtaagaatagtccctattttgaaaacttttaacaaaaaatagacacttt------tccaaaatagtccttataaaatgaaaacaaggaccaaaagtg 3807254  T
Q  225 aataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||| |||||||||| |||||||||||||| || ||||||| || || |||||||||||||||||    
T  3807255 aataaactttttgtaggaactaaacttgaaagtttgtaatttttta-ggaactaaaaacatatttaa 3807320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 266
Target Start/End: Complemental strand, 17158114 - 17157973
Alignment:
Q  126 tttgtaagaatagtcaatattttaaatacattttacaaaaa-tggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtg 224  Q
    |||||||||||| ||  |||||| || || ||||||||||| |||||| || |||| ||| ||| ||||| |||||| |||| ||||| || ||||||||    
T  17158114 tttgtaagaataatctctattttgaaaactttttacaaaaaatggatacttgtagtcctcaaaagtagtctctataagatgcaaatagggactaaaagtg 17158015  T
Q  225 aataaattttttgtagggactaaacttgaaagcttctaattt 266  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||    
T  17158014 aataatttttttgtagggactaaacttaaaagcttgtaattt 17157973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 30465332 - 30465068
Alignment:
Q  27 ttagtgttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtag 125  Q
    |||||||||||||| ||||||||||||| ||| | | ||||||| || |||| | |||||||||||||| ||||||||||| |  | || ||||||| ||    
T  30465332 ttagtgttaaatat-tttttagtccctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaag 30465234  T
Q  126 tttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtg 224  Q
    |||||||||||||||  ||||||||| |  ||| || |||||   ||| ||||||| ||| ||||||||  |||||| |||  | ||| || ||| ||||    
T  30465233 tttgtaagaatagtccctattttaaaaaattttgacaaaaaaattataattttagtcctcgaaaatagtgtctataagatgtaagtagggactaagagtg 30465134  T
Q  225 aataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||||| |||| ||| || |||||||||||  || ||||||||||   || |||||||||||||||    
T  30465133 aataaatgttttatagagattaaacttgaaaatttgtaattttata-aagattaaaaacatatttaa 30465068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 10516740 - 10516591
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| |||  ||||||||| ||||  |||||||||||| || || ||||||||  ||| || |||||||||||||||    
T  10516740 gttaaatatgtttttagtccctacaaaatcataagtttttaaatttagtccctataaaattgtaatgataattttagccctccataatattgtagtttgt 10516641  T
Q  131 aagaatagtcaatattttaaatacattttacaaaa-atggatatttttagt 180  Q
    ||||||||||  || |||||  || |||||||||| ||||||| |||||||    
T  10516640 aagaatagtcccta-tttaataactttttacaaaatatggatacttttagt 10516591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 12611793 - 12611900
Alignment:
Q  33 ttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgta 131  Q
    |||||||| ||||||||||||||||| ||| || ||||||| ||||| |||| |||||||||| ||||||||||| |||| || || ||| |||||| ||    
T  12611793 ttaaatatgtttttagtccctacaaaatcatgaatttttaaatttaatccctctaaaattttaatggtaattttagtcctccataacattatagtttata 12611892  T
Q  132 agaatagt 139  Q
    ||||||||    
T  12611893 agaatagt 12611900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 4405943 - 4405837
Alignment:
Q  34 taaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaa 132  Q
    ||||||| |||||||||| |||||| |||  ||||||||||||||  ||||||||||| ||| |||||||||| ||||| || |||||| || |||||||    
T  4405943 taaatatgtttttagtcc-tacaaaatcataagtttttaagtttagtccctataaaatattaatggtaatttttatcctccataatattctactttgtaa 4405845  T
Q  133 gaatagtc 140  Q
    ||||||||    
T  4405844 gaatagtc 4405837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 292
Target Start/End: Original strand, 10313448 - 10313565
Alignment:
Q  174 ttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggg 273  Q
    ||||||| ||| ||||||||||||||||||||| ||||  || ||||| | ||||| |||| ||||| |||||||||| ||||||| ||||||| ||  |    
T  10313448 ttttagtcctccaaaatagtccctataaaatgcaaataaggactaaaaataaataatttttctgtagagactaaacttaaaagcttgtaattttgta-ag 10313546  T
Q  274 gactaaaaacatatttaat 292  Q
     |||||||||| |||||||    
T  10313547 aactaaaaacaaatttaat 10313565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 25043004 - 25042896
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| ||| ||||||| || ||||  || |||||||||||| ||||||||||| ||||     ||||||||||||||    
T  25043004 gttaaatatgtttttagtccctacaaaatcatgagttttcaaatttagtcc-tataaaattttaatggtaattttagtcctctgtgatattgtagtttgt 25042906  T
Q  131 aagaatagtc 140  Q
    ||||||||||    
T  25042905 aagaatagtc 25042896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 35187760 - 35187886
Alignment:
Q  163 aaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttcta 262  Q
    |||||| ||||||||| |  | |||||||||| || |||||||| ||||   |||||||||||||||||||||| |||| |||| |||| |||| || ||    
T  35187760 aaaatgaatatttttactattttaaaatagtctctctaaaatgcaaatata-attaaaagtgaataaattttttttaggaactatacttaaaagtttgta 35187858  T
Q  263 attttataggggactaaaaacatatttaa 291  Q
    ||||||||  ||| |||||||||||||||    
T  35187859 attttata-tggattaaaaacatatttaa 35187886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 4409019 - 4408911
Alignment:
Q  177 tagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggac 276  Q
    ||||| || ||||||||||||||||||||  |||||  | ||||||||||||||  ||||||| ||| ||||||| |||| || |||||||| | | |||    
T  4409019 tagttttccaaaatagtccctataaaatgtaaataggaactaaaagtgaataaaaattttgtaaggattaaacttaaaagtttgtaattttaca-gagac 4408921  T
Q  277 taaaaacata 286  Q
    ||||||||||    
T  4408920 taaaaacata 4408911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 5644720 - 5644604
Alignment:
Q  174 ttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggg 273  Q
    ||||||| ||| ||||||||  |||||| |||  | ||| || ||| ||||||||||| |||| ||| ||||||||||||||  || ||||||||||  |    
T  5644720 ttttagtcctccaaaatagtgtctataagatgtaagtagggactaagagtgaataaatgttttatagagactaaacttgaaaatttgtaattttata-ag 5644622  T
Q  274 gactaaaaacatatttaa 291  Q
    ||||||||||||||||||    
T  5644621 gactaaaaacatatttaa 5644604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 291
Target Start/End: Original strand, 12338919 - 12339050
Alignment:
Q  159 tacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagct 258  Q
    ||||||||  ||||||||||   ||||||||||||| ||||||||| | || |  || ||||||||||||||   ||||||| |||||||| | ||||||    
T  12338919 tacaaaaacagatatttttatccctctaaaatagtctctataaaatacaaacaaagactaaaagtgaataaaaaatttgtagcgactaaacataaaagct 12339018  T
Q  259 tctaattttataggggactaaaaacatatttaa 291  Q
    | |||||| ||| | || |||||||||||||||    
T  12339019 tataatttaata-gagattaaaaacatatttaa 12339050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 30465405 - 30465349
Alignment:
Q  214 gattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttata 270  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||| || ||||||||||    
T  30465405 gattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttata 30465349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 4409600 - 4409526
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||| ||||||||||||||| ||||||||||| | | ||||||||||| |||| || |||||| || |||||    
T  4409600 aaatcacaagtttttaagtttaatccctataaaatatcaatggtaattttagtcctccataatattctactttgt 4409526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 10311660 - 10311770
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaataca 155  Q
    |||||||||||||| || ||||   |||||||||||||| ||||||||||| || |  | ||||||||| ||||||||||| |||  |||||| |||       
T  10311660 aaatcacgagttttcaaatttagttcctataaaattttaatggtaattttagtcatcaacaatattgtaatttgtaagaatggtccttattttgaatttt 10311759  T
Q  156 ttttacaaaaa 166  Q
    |||||||||||    
T  10311760 ttttacaaaaa 10311770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 4254625 - 4254469
Alignment:
Q  114 aaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatag 212  Q
    |||||| |||||||||||| |||| ||  ||||||||| ||  ||||| ||||||||| | |||||   ||| |||||||||| | |||||||  ||||     
T  4254625 aaaatactgtagtttgtaaaaataatccctattttaaaaactgtttacaaaaaatggacacttttaaccctccaaaatagtccttgtaaaatgaaaataa 4254526  T
Q  213 cgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttata 270  Q
     |||||||||| ||||||  ||||||   |||||||||| ||||||| ||||||||||    
T  4254525 ggattaaaagtaaataaa-attttgtgaagactaaacttaaaagcttgtaattttata 4254469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 15065480 - 15065419
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    ||||||||||   ||||||||||||| |  |||||||||||| |||||||||||||||||||    
T  15065480 tacaaatcacatttttttaagtttaatcgatataaaattttaatggtaattttaatccttca 15065419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 25042817 - 25042783
Alignment:
Q  217 taaaagtgaataaattttttgtagggactaaactt 251  Q
    |||||||||||||| ||||||||||||||||||||    
T  25042817 taaaagtgaataaaatttttgtagggactaaactt 25042783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 34187624 - 34187720
Alignment:
Q  193 tccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    |||||||||||||| ||||| ||| ||||| |||||||   ||||| | |||||||||| |||  || ||||||| || ||||||||||||||||||||    
T  34187624 tccctataaaatgcaaatagggatgaaaagagaataaa-aatttgtggagactaaacttaaaaatttgtaattttgta-gggactaaaaacatatttaa 34187720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 1277730 - 1277790
Alignment:
Q  231 ttttttgtagggactaaacttgaaagcttct-aattttataggggactaaaaacatatttaa 291  Q
    |||| ||||||||||||||||||||  |||| ||||||||| ||||||||||| ||||||||    
T  1277730 ttttgtgtagggactaaacttgaaatattctgaattttata-gggactaaaaatatatttaa 1277790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 15326510 - 15326449
Alignment:
Q  53 tacaaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttca 114  Q
    |||||||||| |||||||||| |||  |  |||||||||||| | |||||||||||||||||    
T  15326510 tacaaatcacaagtttttaagcttagtcgatataaaattttaattgtaattttaatccttca 15326449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 83 - 291
Target Start/End: Complemental strand, 152289 - 152081
Alignment:
Q  83 tataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttac-aaaaatggatatttttagtt 181  Q
    |||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||||  |||||| || || | || | ||||||| |||||||||||     
T  152289 tataaaattttaatggtaattttagtccttcataatattgtagattgtaagaatagtccctatttttaaaacttcttgcaaaaaatgaatatttttagtc 152190  T
Q  182 ctctaaaatagtccctataaaatgccaatagcgattaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaa 281  Q
     |  ||||||||| ||||||||||| ||||  || ||||||||| ||||  |||||||  ||||||||||| |||| | ||||||| || ||||||||||    
T  152189 tttcaaaatagtctctataaaatgcaaataaggactaaaagtgagtaaaacttttgtaaagactaaacttgtaagcctataattttgta-gggactaaaa 152091  T
Q  282 acatatttaa 291  Q
    ||||||||||    
T  152090 acatatttaa 152081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 3219 - 3418
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||| |||| |||||| |||||||| ||||||||||| ||| ||||||||||  |||||||    
T  3219 gttaaatatgtttttagtccctacaaaatcatgagtttttaagcttaatccctatgaaattttaatggtaattttagtcc-tcaaaatatttaagtttgt 3317  T
Q  131 aagaatagtcaatatttt---aaatacat-tttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaa 226  Q
     | |||||||  ||||||   || || || |  | ||||||||||| ||||||| ||| ||||| |||||| ||||| || ||||| || ||||||||||    
T  3318 taaaatagtccctattttgagaactatatatacaaaaaaatggatacttttagtcctccaaaattgtccctctaaaacgcaaatagggactaaaagtgaa 3417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 8597 - 8706
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||||| |||  ||| || |||||||| ||||||||||| |||| |||||||||  |||||||    
T  8597 gttaaatatgtttttagtccctaaaaaatcatgagtttttaagcttagtcccaatgaaattttaatggtaattttagtcctccaaaatatttaagtttgt 8696  T
Q  131 aagaatagtc 140  Q
     | |||||||    
T  8697 taaaatagtc 8706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 291
Target Start/End: Complemental strand, 48540 - 48333
Alignment:
Q  88 aattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaaatacattttaca---aaaatggatatttttagttctc 184  Q
    ||||||| ||||||||||| |||| || || |||||||||| |||||| ||||  | |||| || || |||||||   |||||||||| |||||||  ||    
T  48540 aattttaatggtaattttagtcctccataaaattgtagtttataagaacagtccctcttttgaaaactttttacaaaaaaaatggatacttttagtcatc 48441  T
Q  185 taaaatagtccctataaaatgccaatagcgattaaaagtgaataaattt--tttgtagggactaaacttgaaagcttctaattttataggggactaaaaa 282  Q
     ||||||||| ||||||||||  ||||  || |||||||| |||| |||  ||| ||| |||||||||||||| ||| ||||||| || ||||||||| |    
T  48440 caaaatagtctctataaaatgaaaatatggactaaaagtggataatttttctttatagtgactaaacttgaaaacttgtaattttgta-gggactaaata 48342  T
Q  283 catatttaa 291  Q
    |||||||||    
T  48341 catatttaa 48333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 5636 - 5440
Alignment:
Q  32 gttaaatatatttttagtccctacaaa-tcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgt 130  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||| ||   |||||| |||||||| |||||  |||| |||| ||||||||| ||||||||    
T  5636 gttaaatatgtttttagtccctacaaaatcatgagtttttaagcttggtccctatgaaattttaatggtatatttagtcctccaaaatattttagtttgt 5537  T
Q  131 aagaatagtcaatattttaaatacattttac--aaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaata 228  Q
    || | |||||  |||||| || || || |||  ||||||||||| |     ||||| ||||||||||||  ||||||| ||||| || ||||| ||||||    
T  5536 aaaagtagtccctattttgaaaactttatacaaaaaaatggatact-----ttctccaaaatagtcccttgaaaatgcaaatagggactaaaaatgaata 5442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 3 - 179
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagtcaatattttaa----- 150  Q
    |||||| ||||||||||| |||  |||||| |||||||| ||||||||||| |||| |||||||||  ||||||| | |||||||  |||||| |         
T  3 aaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttgttaaaatagtccctattttgagaact 102  T
Q  151 atacattttacaaaaatggatatttttagttctctaaaatagtccctataaaatgccaatagcgattaaaagtgaat 227  Q
    ||| ||   | ||||||||||| ||||||| ||| || ||||||||| |||||||  ||||| || |||||||||||    
T  103 atatatacaaaaaaaatggatacttttagtcctccaagatagtccctctaaaatgtaaatagagactaaaagtgaat 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 15139 - 15067
Alignment:
Q  218 aaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaa 291  Q
    ||||||||||||| ||||| |||||||||||||||||||||| ||||||  || || |||||| ||||||||||    
T  15139 aaaagtgaataaaatttttatagggactaaacttgaaagcttgtaatttcgta-ggaactaaatacatatttaa 15067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 1478 - 1554
Alignment:
Q  215 attaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaat 292  Q
    ||||||||||||||||||| || |||| ||||||||| |||| || ||||||| || ||||||| |||||||||||||    
T  1478 attaaaagtgaataaatttattttaggaactaaacttaaaagtttataattttgta-gggactataaacatatttaat 1554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 7944 - 8020
Alignment:
Q  215 attaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaat 292  Q
    ||||||||||||||||||| || |||| ||||||||| |||| || ||||||| || ||||||| |||||||||||||    
T  7944 attaaaagtgaataaatttattttaggaactaaacttaaaagtttataattttgta-gggactataaacatatttaat 8020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 14996 - 14921
Alignment:
Q  215 attaaaagtgaataaattttttgtagggactaaacttgaaagcttctaattttataggggactaaaaacatatttaat 292  Q
    |||||||||||||||||||||| |||| |||||| || |||| || ||||||| || ||||||| |||||||||||||    
T  14996 attaaaagtgaataaatttttt-taggaactaaatttaaaagtttataattttgta-gggactataaacatatttaat 14921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 19872 - 19789
Alignment:
Q  56 aaatcacgagtttttaagtttaaaccctataaaattttagtggtaattttaatccttcaaaatattgtagtttgtaagaatagt 139  Q
    |||||| || |||||| |||||  |||||||||||||||  |||||||||| || |  |||||||||||||| |||| ||||||    
T  19872 aaatcatgaatttttatgtttagtccctataaaattttaacggtaattttagtcgtcgaaaatattgtagttagtaaaaatagt 19789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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