View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3962_high_13 (Length: 341)
Name: NF3962_high_13
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3962_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 112 - 325
Target Start/End: Original strand, 27058346 - 27058560
Alignment:
| Q |
112 |
gaataatatcgaaaagtgaaatgaaaataatatttatcgtgagagacnnnnnnnn-agtagtaccttaaaatttattttgtcaattaggtcaaataactc |
210 |
Q |
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| T |
27058346 |
gaataatatcgaaaagtgaaatgaaaataatatttatcgtgagagactttttttttagtagtaccttaaaatttattttgtcaattaggtcaaataactc |
27058445 |
T |
|
| Q |
211 |
ctaattaaactaactaataactaacttaaacctaccttttatgacaaagcgtacatacatctcatttgccacatcaacaagattaaacaccgtttaccac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27058446 |
ctaattaaactaactaataactaacttaaacctaccttttatgacaaagcgtacatacatctcatttgccacatcaacaagattaaacaccgtttaccac |
27058545 |
T |
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| Q |
311 |
tcacgtacttgaaat |
325 |
Q |
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||||||||||||||| |
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| T |
27058546 |
tcacgtacttgaaat |
27058560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 27058189 - 27058298
Alignment:
| Q |
9 |
agcagagatatgcagaaacctcaataatgaaacataaagcaaaagtacgtcaaaaaaggaatcagtgaaaatattctcaagaaatttgagaaagaaaatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27058189 |
agcagagatatgcagaaacctcaataatgaaacataaagcaaaagtacatcaagaaaggaatcagtgaaaatattctcaagaaatttgagaaagaaaatt |
27058288 |
T |
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| Q |
109 |
gtggaataat |
118 |
Q |
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|||||||||| |
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| T |
27058289 |
gtggaataat |
27058298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 38503773 - 38503812
Alignment:
| Q |
118 |
tatcgaaaagtgaaatgaaaataatatttatcgtgagaga |
157 |
Q |
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| T |
38503773 |
tatcgaaaagtgaaatgaaaataatatttatcatgagaga |
38503812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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