View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3962_high_2 (Length: 708)
Name: NF3962_high_2
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3962_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Original strand, 23422069 - 23422749
Alignment:
| Q |
19 |
gaaaagatacagatccatttgccattcttcccacgtgacactcctctgcatccagcaagactcctagtccctcctttatatgtgccatcagtgttaaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23422069 |
gaaaagatacagatccatttgccattcttcccacgtgacactcctctgcatccagcaagactcc------ctcctttatatgtgccatcagtgttaaaat |
23422162 |
T |
|
| Q |
119 |
ggatccaactactttcaggggcctaccacttgatactttccaaaacagtcattatatggtg---ttatgctcagaagcagttttagcactaattgcataa |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |
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| T |
23422163 |
ggatccaactactttcaggggcctaacacttgatactttccaaaacagtcattatatggtggtgttatgctcagaagcagttttagccctaactgcataa |
23422262 |
T |
|
| Q |
216 |
caattaacttgccaaggattactaggtgacataatatcctcatcatgcatcattttgttcctccaattccacaaagtatgacatgtcattgtctaaaaat |
315 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23422263 |
caattaacttgccaaggattactaggcgacacaatatcctcatcatgcatcattttgttccttcaattccacaaagtatgacatgtcattgtctaaaaac |
23422362 |
T |
|
| Q |
316 |
cagtccaatcaaaagcttcctcctaactcaataccatatgcatccataatcaaccgtgttaagccacccattgctaagggacaatcgcaaagaacatgcg |
415 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23422363 |
cagtccaatccaaagcttcctcctaactcaataccatatgcatccataatcaaccccgttaagccacc-attgctaagggacaatcgcaaagaacatgcg |
23422461 |
T |
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| Q |
416 |
atgttgttttgatagtaattatacacttgtgacagtttgcagttcacagatacatgatctgcaatctgctattagttaagagtttatcgtgtttgagcaa |
515 |
Q |
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| T |
23422462 |
atgttgttttgatagtaattatacacttgtgacagtttgcagttcacagatacatgatctgcaatctgctattagtaaagagtttatcgtgtttgagcaa |
23422561 |
T |
|
| Q |
516 |
ccacgcaaacttattccctttggggcattaaaattacacactcgcacccaatagctggaaacaggtttaattaaaccaccacataactgtttacaagctt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23422562 |
ccacgcaaacttattccctttggggcattaaaattacacactcgcacccaatagctggaaacaggtttaattaaaccaccacataactgtttacaagctt |
23422661 |
T |
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| Q |
616 |
gactgcttgagcaactgagaaatctccaaaactcacaccaggctatgcagaaacatcaccacccttgcaaatcattcacaggttctgc |
703 |
Q |
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| T |
23422662 |
gactgcttgagcaactgagaaatctccaaaactcacaccaggctatgcagaaacatcaccacccttgcaaatcattcacaagttctgc |
23422749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 310 - 600
Target Start/End: Complemental strand, 23876748 - 23876477
Alignment:
| Q |
310 |
aaaaatcagtccaatcaaaagcttcctcctaactcaataccatatgcatccataatcaaccgtgttaagccacccattgctaagggacaatcgcaaagaa |
409 |
Q |
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||||||||||||| || || |||||||||| || || |||||| |||||||||||||||| |||||| |||| ||||||||| ||||| ||| ||||| |
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| T |
23876748 |
aaaaatcagtccactccaaggcttcctcctcacgaaacaccataaacatccataatcaaccgcgttaagtcacc-attgctaagagacaaccgcgaagaa |
23876650 |
T |
|
| Q |
410 |
catgcgatgttgttttgatagtaattatacacttgtgacagtttgcagttcacagatacatgatctgcaatctgctattagttaagagtttatcgtgttt |
509 |
Q |
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||||| |||| ||||||||||| |||||| | |||||||| |||||| |||| |||||||||||| |||||||||||||||| | |
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| T |
23876649 |
catgcaatgtcgttttgatagtttctatacagtggtgacagtgtgcagt----------atgacctgcaatctgct-----ttaagagtttatcgtg--t |
23876567 |
T |
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| Q |
510 |
gagcaaccacgcaaacttattccctttggggcattaaaattacacactcgcacccaatagctggaaacaggtttaattaaaccaccacata |
600 |
Q |
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| T |
23876566 |
aagcaaccacgcaaacgtattccctttggggcattaattttacacatccgtgaccaatagctggaaacagg-ttaaataaaacaccacata |
23876477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 23420118 - 23420192
Alignment:
| Q |
228 |
caaggattactaggtgacataatatcctcatcatgcatcattttgttcctccaattccacaaagtatgacatgtc |
302 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||| |||||||||||| |
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| T |
23420118 |
caaggattactaggtgacacaaaatcctcatcatgcatcgttctgttcctccaattccacaacgtatgacatgtc |
23420192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 23883182 - 23883108
Alignment:
| Q |
226 |
gccaaggattactaggtgacataatatcctcatcatgcatcattttgttcctccaattccacaaagtatgacatg |
300 |
Q |
| |
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| T |
23883182 |
gccaaggattactaggtgacacaaaatcctcatcatgcatccttctgttcctccaattccacgaagtatgacatg |
23883108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 23876854 - 23876774
Alignment:
| Q |
155 |
tttccaaaacagtcattatatggtgttatgctcagaagcagttttagcactaattgcataacaattaacttgccaaggattac |
237 |
Q |
| |
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||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
23876854 |
tttccaaaacagtcattgta--gtgttctgctcagaagcagttttagcactaaccacataacaattaacacgccaaggattac |
23876774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 617
Target Start/End: Original strand, 23420391 - 23420555
Alignment:
| Q |
453 |
tgcagttcacagatacatgatctgcaatctgctattagttaagagtttatcgtgtttgagcaaccacgcaaacttattccctttggggcattaaaattac |
552 |
Q |
| |
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|||||||| |||| ||||| ||||||||||||||| |||| || |||| |||||| |||||||| ||||| || || || | |||||||| || |
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| T |
23420391 |
tgcagttctgagatgcatgacttgcaatctgctattacttaaccgtctatcttgtttgcgcaaccacacaaacgtactctctctcgggcattatttttca |
23420490 |
T |
|
| Q |
553 |
acactcgcacccaatagctggaaacaggtttaattaaaccaccacataactgtttacaagcttga |
617 |
Q |
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|||| | || |||||||||| ||| |||| || |||| |||||||||||| |||| |||||||| |
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| T |
23420491 |
acacccccatccaatagctgaaaattggttcaactaaatcaccacataactctttataagcttga |
23420555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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