View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3962_high_5 (Length: 490)

Name: NF3962_high_5
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3962_high_5
NF3962_high_5
[»] chr4 (10 HSPs)
chr4 (18-475)||(25038469-25038926)
chr4 (76-462)||(25017381-25017763)
chr4 (122-313)||(4600040-4600234)
chr4 (125-184)||(25189367-25189426)
chr4 (119-223)||(4624381-4624485)
chr4 (124-208)||(25160169-25160253)
chr4 (122-204)||(24986320-24986402)
chr4 (122-204)||(25000761-25000843)
chr4 (122-204)||(25046723-25046805)
chr4 (124-208)||(25180398-25180482)
[»] chr2 (4 HSPs)
chr2 (124-216)||(42167203-42167295)
chr2 (125-208)||(42290572-42290655)
chr2 (246-330)||(18804206-18804290)
chr2 (125-208)||(42156724-42156807)
[»] chr6 (2 HSPs)
chr6 (119-192)||(29406191-29406264)
chr6 (128-192)||(29460063-29460127)
[»] chr5 (1 HSPs)
chr5 (125-208)||(30360889-30360972)


Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 25038926 - 25038469
Alignment:
Q  18 aatttatatgagcacgatccatgatagagctttatgaagtcgattgaaatatgtattttatatggtttcattgctgatgtttttgttgttaaattttata 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25038926 aatttatatgagcacgatccatgatagagctttatgacgtcgattgaaatatgtattttatatggtttcattgctgatgtttttgttgttaaattttata 25038827  T
Q  118 catatgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagccacactcttac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25038826 catatgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagccacactcttac 25038727  T
Q  218 agtttgggttcagaaccttacatcgtctcacacaaccaactccttgctcatgcagctgctgtcaaactttatagaaccaatcatcaggtgcaacaccgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25038726 agtttgggttcagaaccttacatcgtctcacacaaccaactccttgctcatgcagctgctgtcaaactttatagaaccaatcatcaggtgcaacaccgaa 25038627  T
Q  318 gaaccataaacctattttgttacatgcatgttcaaatttattagtaataaaaatcttgtatttgttatgattttccgaaaaactttaactaactcgaatt 417  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25038626 gaaccataaacctattttgttacatgcatgttgaaatttattagtaataaaaatcttgtatttgttatgattttccgaaaaactttaactaactcgaatt 25038527  T
Q  418 aatggcatcaggcttctcaaaatggttcaataggcatcaccttaaattgtcacaggtt 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25038526 aatggcatcaggcttctcaaaatggttcaataggcatcaccttaaattgtcactggtt 25038469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 76 - 462
Target Start/End: Complemental strand, 25017763 - 25017381
Alignment:
Q  76 tatatggtttcattgctgatgtttttgttgttaaattttatacatat--gcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggag 173  Q
    |||||||||| ||||||||  ||||||||||||| || |||| ||||  |||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  25017763 tatatggtttgattgctgacatttttgttgttaatttctatatatatatgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggag 25017664  T
Q  174 atagagtgaagcattggattaccttcaatgagccacactcttacagtttgggttcagaaccttacatcgtctcacacaaccaactccttgctcatgcagc 273  Q
    |  |||||||||||||||||||||||||||| |||||   ||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||    
T  25017663 accgagtgaagcattggattaccttcaatgacccacatgtttacagtttgggttcagaaccatacatggccacacacaaccaactccttgctcatgcagc 25017564  T
Q  274 tgctgtcaaactttatagaaccaatcatcaggtgcaacaccgaagaaccataaacctattttgttacatgcatgttcaaatttattagtaataaaaatct 373  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| ||| |||||| | |||| ||  ||| ||||| ||||||||| |||||||||||||    
T  25017563 tgctgtcaaaatttatagaaccaatcaccaggtgcaacactgaaaaactataaacttttttt-ttctatg-atgttaaaatttatttgtaataaaaatct 25017466  T
Q  374 tgtatttgttatgattttccgaaaaactttaactaactcgaattaatggcatcaggcttctcaaaatggttcaataggcatcaccttaa 462  Q
    |||||||||||||||| |||   |||| ||||||| || |||||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  25017465 tgtatttgttatgattgtcc---aaacattaacta-cttgaattaatggcagcagtcttctcaaaatggttcaataggcatcagcttaa 25017381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 313
Target Start/End: Complemental strand, 4600234 - 4600040
Alignment:
Q  122 tgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagccacactcttacagtt 221  Q
    ||||||||||||||| | |||| ||  ||| |||||||| | ||||| ||||||||||| ||||||||| |||| || |||||||||  ||||||  |||    
T  4600234 tgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaatgagccattctcttattgtt 4600135  T
Q  222 tgggt---tcagaaccttacatcgtctcacacaaccaactccttgctcatgcagctgctgtcaaactttatagaaccaatcatcaggtgcaacac 313  Q
    || ||   ||| | | |||||  | | ||||||||||||| ||| |||||||||||| |||| || | |||| ||||||  ||||||||||||||    
T  4600134 tgagtacatcacatcgttacaaagccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacac 4600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 25189426 - 25189367
Alignment:
Q  125 agaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaag 184  Q
    ||||||||||||| ||||||||| || || |||||||||||||| |||||||||||||||    
T  25189426 agaaatgattttcgagactatgctgatctttgcttcaaggaatttggagatagagtgaag 25189367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 4624485 - 4624381
Alignment:
Q  119 atatgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagccacactcttaca 218  Q
    ||||||||||| |||||| | |||| ||  ||  |||||||||||||||| ||||| || || ||||||||| |||| || |||||||||  ||||||||    
T  4624485 atatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagtgtaaagcattgggttacttttaatgagccattctcttaca 4624386  T
Q  219 gtttg 223  Q
     ||||    
T  4624385 ctttg 4624381  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 25160253 - 25160169
Alignment:
Q  124 cagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagcca 208  Q
    |||||| ||||||||||||||||| || || || ||||||||||| || |||||||| ||| ||||| |||| || || ||||||    
T  25160253 cagaaaagattttcaagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagcca 25160169  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 24986402 - 24986320
Alignment:
Q  122 tgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatga 204  Q
    |||||| |||||||| | |||||||| || || |||| ||||||||| || ||||| ||||| ||||||||||| || |||||    
T  24986402 tgcagagatgattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatga 24986320  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 25000761 - 25000843
Alignment:
Q  122 tgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatga 204  Q
    |||||| ||||||||   |||||||| || || |||||||||||||| || ||||| ||||| ||||||||||| || |||||    
T  25000761 tgcagagatgattttagggactatgctgaactttgcttcaaggaatttggcgatagggtgaaacattggattactttgaatga 25000843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 25046805 - 25046723
Alignment:
Q  122 tgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatga 204  Q
    ||||||||||||||| | |||||||| || || |||||||||||||| || ||||| ||||| | ||||| ||| || |||||    
T  25046805 tgcagaaatgattttaaggactatgctgatctttgcttcaaggaatttggtgatagggtgaaacgttggactactttgaatga 25046723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 25180482 - 25180398
Alignment:
Q  124 cagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagcca 208  Q
    |||||| ||||||||||||||||| || || ||||| ||   ||| ||||||||||| || |||||||| || || |||||||||    
T  25180482 cagaaaagattttcaagactatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgagcca 25180398  T

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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 42167295 - 42167203
Alignment:
Q  124 cagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagccacactctta 216  Q
    |||||||||||||||||||||||| || || || ||||| || || |||||||| |||||| |||||||||| |||||||||||| |||||||    
T  42167295 cagaaatgattttcaagactatgcggaactttgtttcaaagagtttggagatagggtgaagtattggattactttcaatgagccatactctta 42167203  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 42290572 - 42290655
Alignment:
Q  125 agaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagcca 208  Q
    |||||||||||||||||||| || || || || ||||| || || |||||||| |||||| ||||||| || ||||||||||||    
T  42290572 agaaatgattttcaagactacgcggaactttgtttcaaagagtttggagatagggtgaagtattggatcactttcaatgagcca 42290655  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 18804206 - 18804290
Alignment:
Q  246 cacacaaccaactccttgctcatgcagctgctgtcaaactttatagaaccaatcatcaggtgcaacaccgaagaaccataaacct 330  Q
    |||| |||| ||| || ||||||||||||||||||||| | |||| ||| ||| |||||||||| ||  |||||||||| |||||    
T  18804206 cacaaaacctacttctcgctcatgcagctgctgtcaaattgtataaaacaaattatcaggtgcaccattgaagaaccattaacct 18804290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 42156807 - 42156724
Alignment:
Q  125 agaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagcca 208  Q
    ||||||||||||||||| ||||| || || || ||||| || || |||||||| |||||| ||||||  || ||||||||||||    
T  42156807 agaaatgattttcaagattatgcggaactttgtttcaaagagtttggagatagggtgaagtattggaccactttcaatgagcca 42156724  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 29406191 - 29406264
Alignment:
Q  119 atatgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggat 192  Q
    ||||| || |||||||||| ||||||||||||||| || |  ||||||||||||||||| ||||||||||||||    
T  29406191 atatgtaggaatgattttcgagactatgcagagctttgttataaggaattcggagatagggtgaagcattggat 29406264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 29460127 - 29460063
Alignment:
Q  128 aatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggat 192  Q
    ||||||||||||||||||| |||||| || || || ||||| |||||||| || |||||||||||    
T  29460127 aatgattttcaagactatgtagagctttgttttaaagaatttggagatagggtaaagcattggat 29460063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 30360889 - 30360972
Alignment:
Q  125 agaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagcca 208  Q
    |||||||||||||  || || || ||||| |||||||||||||| ||||||||||||||| | ||||||||  | |||||||||    
T  30360889 agaaatgattttcgggattacgcggagctttgcttcaaggaatttggagatagagtgaagtactggattacgataaatgagcca 30360972  T

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