View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3962_high_6 (Length: 489)
Name: NF3962_high_6
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3962_high_6 |
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| [»] scaffold0499 (1 HSPs) |
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Alignment Details
Target: scaffold0499 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 102 - 392
Target Start/End: Complemental strand, 2837 - 2547
Alignment:
| Q |
102 |
tatgagatagagcactagtaggttgttaaccttttcttatcctataagttttcttttgtttcaacactaacttagtatatgatacaaaattnnnnnnnca |
201 |
Q |
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| T |
2837 |
tatgagatagagcaccagtaggttgttgatctttttttatcctataagttttctcttgtttcaaaactaacttagaaaatgatacaaaattaaaaaaaca |
2738 |
T |
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| Q |
202 |
caaaactcaaattacatttgaaccttaacttacatgcaacgggtgcagttgcaaatgcctgtacagtttgaaattatatatcattcatcaagtctacata |
301 |
Q |
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| T |
2737 |
caaaactcaaattacatttgaaccctaacttacatgcaacggctgcagttgcaaatgcctgtacagtttgaaattatatatcattcatcaagtctacata |
2638 |
T |
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| Q |
302 |
ttttgtctttcgccatatctgaactcaacacacaaaaatcgttgtcttttaaaaaagcatacaataaattagtctaccattatactcttgg |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
2637 |
ttttgtctttcgccatatctgaactcaacacacaaaaatcattgtcttttaaaaaagcacacaataaaatagtctaccattatactcttgg |
2547 |
T |
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