View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3962_low_1 (Length: 715)

Name: NF3962_low_1
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3962_low_1
NF3962_low_1
[»] chr7 (31 HSPs)
chr7 (15-715)||(22831441-22832160)
chr7 (413-715)||(22805719-22806027)
chr7 (412-715)||(22840462-22840772)
chr7 (446-715)||(22815437-22815715)
chr7 (519-715)||(22810054-22810252)
chr7 (503-715)||(22858829-22859041)
chr7 (460-715)||(22842574-22842843)
chr7 (479-715)||(22876326-22876567)
chr7 (413-632)||(22885988-22886210)
chr7 (476-715)||(22894354-22894606)
chr7 (554-715)||(22898673-22898836)
chr7 (261-410)||(22810396-22810543)
chr7 (548-715)||(22889702-22889868)
chr7 (476-682)||(22873589-22873794)
chr7 (476-587)||(22841175-22841286)
chr7 (251-380)||(22859131-22859261)
chr7 (127-234)||(22816243-22816350)
chr7 (519-715)||(22880974-22881158)
chr7 (131-364)||(22886284-22886524)
chr7 (260-380)||(22806079-22806199)
chr7 (179-380)||(22842942-22843135)
chr7 (127-233)||(22810585-22810690)
chr7 (254-316)||(22894792-22894854)
chr7 (254-309)||(22841490-22841545)
chr7 (143-223)||(22843134-22843214)
chr7 (251-316)||(22816032-22816095)
chr7 (177-234)||(22874013-22874070)
chr7 (683-715)||(22885937-22885969)
chr7 (254-314)||(22899055-22899113)
chr7 (426-477)||(22810292-22810343)
chr7 (669-715)||(22914078-22914124)
[»] chr1 (2 HSPs)
chr1 (425-715)||(21150029-21150304)
chr1 (255-346)||(21149819-21149910)
[»] chr8 (1 HSPs)
chr8 (30-72)||(42447348-42447390)
[»] chr5 (1 HSPs)
chr5 (36-78)||(4523922-4523964)


Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 15 - 715
Target Start/End: Complemental strand, 22832160 - 22831441
Alignment:
Q  15 agaaagaagaagaaaaataacaaatgcatttagtaatttgtagtgagtcttatatttaaggacatacattttctcttataaatcgtcttatatttagaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  22832160 agaaagaagaagaaaaataacaaatgcatttagtaatttgtagtgagtcttgtatttaaggacatacattttcttttataaatcgtcttatatttagaga 22832061  T
Q  115 tgaggtgactatgtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22832060 tgaggtgactatgtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagt 22831961  T
Q  215 ccacacattcaagtttgaaaaggnnnnnnnnnncacttt-aagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacactta 313  Q
    ||||||||||||||||||||||           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22831960 ccacacattcaagtttgaaaagaaaaaaaaaaacacttttaagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacactta 22831861  T
Q  314 atatgaatacgttgaaaaatattcccccactactacagatggaaagaaaatttgtgcttcgaatgtgctcatttattcaaatgtgtaacacattcatgt- 412  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| || |     
T  22831860 atatgaatacgttgaaaaatattcccccacaactacagatggaaagaaaaattgtggttcaaatgtgctcatttattcaaatgtgtaacacattaatttt 22831761  T
Q  413 -----------------cagatgataaggcaatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggatatttctt 495  Q
                     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22831760 cactaaactaaatatctcagatgataaggcaatttaagaaactttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggacatttctt 22831661  T
Q  496 agtaggtcccaaattaggcatgcaatttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcaca 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22831660 agtaggtcccaaattaggcatgcaatttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacacaagcattattcattcaca 22831561  T
Q  596 aactataatcatgttccacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataacagtttcatctataatggattccaatca 695  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||| |||| | |||||||||||||||||| |||||||||    
T  22831560 aactataatcatgttcctcaagcttgtgtttatgttgttttttcttgttacatttgtagcaagtgaagacagcagtttcatctataatggtttccaatca 22831461  T
Q  696 tcacatttatatcttgatgg 715  Q
    ||||||||||||||||||||    
T  22831460 tcacatttatatcttgatgg 22831441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 413 - 715
Target Start/End: Complemental strand, 22806027 - 22805719
Alignment:
Q  413 cagatgataa-ggcaatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagc-----taggttccaggatatttcttagtaggtccca 506  Q
    |||||||||| |||||||| || |||| ||||| ||||||||||||| || ||| |||||||||     || ||||||||| |||||||| |||| ||||    
T  22806027 cagatgataaaggcaattttagtaaccatgtcatgtgatgtttcttttagaaatgattcgtagctaagttatgttccaggacatttcttactaggaccca 22805928  T
Q  507 aattaggcatgcaatttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatca 606  Q
    |||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  22805927 aattagacttgcaattttttcttcacttaggacaaaatcttataaataataaacaccgaacagaactacacaagcattattcattctcaaactataatca 22805828  T
Q  607 tgttccacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataacagtttcatctataatggattccaatcatcacatttata 706  Q
    |||||| |||||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22805827 tgttcctcaaacttgtgtttatgttgttttttcatgttacattagtagcaagtgaagataacagtttcatctataatggattccaatcatcacatttata 22805728  T
Q  707 tcttgatgg 715  Q
    |||||||||    
T  22805727 tcttgatgg 22805719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 412 - 715
Target Start/End: Complemental strand, 22840772 - 22840462
Alignment:
Q  412 tcagatgataa-ggcaatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggatatttcttagtaggtcccaaatt 510  Q
    ||||||||||| ||||| || || ||||| |||| |  ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  22840772 tcagatgataaaggcaaatttagtaacctggtcatgaaatgtttctttcagaaataattcgtagctaggttccaggacatttcttagtaggacccaaatt 22840673  T
Q  511 aggcatgcaatttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgtt 610  Q
    || |||| |||||||  |||||||   |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  22840672 agacatgaaatttttctttcacttaccacaaaatcttataaataataaacaccaaacagaactacagaagcatcatttattcacaaactataatcatgtt 22840573  T
Q  611 ccacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataacagtttcatct------ataatggattccaatcatcacattta 704  Q
    |  |||||||||||| ||||||||||||| |||||||||||| ||||||| ||| |||||||||||||      |||||||||||||||||||| |||||    
T  22840572 catcaaacttgtgttcatgttgttttttcatgttacattggtagcaagtatagacaacagtttcatctataaatataatggattccaatcatcaaattta 22840473  T
Q  705 tatcttgatgg 715  Q
    |||||||||||    
T  22840472 tatcttgatgg 22840462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 446 - 715
Target Start/End: Complemental strand, 22815715 - 22815437
Alignment:
Q  446 gtgatgtttctttcagtaataat---tcgtagctaggttccaggatatttcttagta----ggtcccaaattaggcatgcaatttttacttcactttgga 538  Q
    ||||||||||||| |||||||||   || |||||| ||||||||| |||||||||||    || |||||||||| |||||||||||| |||||||| | |    
T  22815715 gtgatgtttcttttagtaataataattcctagctaagttccaggacatttcttagtacctaggacccaaattagacatgcaatttttccttcacttagca 22815616  T
Q  539 caaaatcttataaataataaa-caccgaacagaactacagaagcattattcattcacaaacta-taatcatgttccacaaacttgtgtttatgttgtttt 636  Q
    ||||||||||||||||| ||| || | |||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||| ||||||||||    
T  22815615 caaaatcttataaataacaaaacatcaaacagaactacagaagcattgttcattcacaaactaataatcatgttcctcaaacatgtgttcatgttgtttt 22815516  T
Q  637 ttcttgttacattggtggcaagtaaagataacagtttcatctataatggattccaatcatcacatttatatcttgatgg 715  Q
    |||| ||||||||||| ||||||  ||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22815515 ttctcgttacattggtagcaagtgtagacaacagtttcatatataatggattccaatcatcacatttaaatcttgatgg 22815437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 519 - 715
Target Start/End: Complemental strand, 22810252 - 22810054
Alignment:
Q  519 aatttttacttcactttggacaaaatcttataaataataaacaccgaacag---aactacagaagcattattcattcacaaactataatcatgttccaca 615  Q
    ||||||| |||||||| | | ||||||||||||||||||||||  ||||||   ||||||||||||||||||||||||||||||||||||||||||| ||    
T  22810252 aattttttcttcacttagaa-aaaatcttataaataataaacattgaacagcagaactacagaagcattattcattcacaaactataatcatgttcctca 22810154  T
Q  616 aacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataacagtttcatctataatggattccaatcatcacatttatatcttgatgg 715  Q
    | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22810153 agcttgtgtttatgttgttttttcttgttacattagtagcaagtaaagataacagtttcatctataatggtttccaatcatcacatttatatcttgatgg 22810054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 503 - 715
Target Start/End: Complemental strand, 22859041 - 22858829
Alignment:
Q  503 cccaaattaggcatgcaatttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactata 602  Q
    |||||||||| |||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |    
T  22859041 cccaaattagacatgcaatttttccttcacttagcacaaaatcttataaataacaaacaccgaacagaactacacaagcattgttcattcacaaactaaa 22858942  T
Q  603 atcatgttccacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataacagtttcatctataatggattccaatcatcacatt 702  Q
    |||||||||| |||  |||| |||||||| | ||| |||||||||||||| |||||| |||| ||| ||||||||||||| |||||||||||||||||||    
T  22858941 atcatgttcctcaagtttgtctttatgttatgtttgcttgttacattggtagcaagtgaagacaacggtttcatctataaaggattccaatcatcacatt 22858842  T
Q  703 tatatcttgatgg 715  Q
    |||||||||||||    
T  22858841 tatatcttgatgg 22858829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 460 - 715
Target Start/End: Complemental strand, 22842843 - 22842574
Alignment:
Q  460 agtaataattcgtagct-----aggttccaggatatttcttagtaggtcccaaattaggcatgcaattttta-cttcactttggacaaaatcttataaat 553  Q
    |||||||||||||||||     ||||||||||| ||||||||||||| ||||||||||   ||  ||||| | |||||||| | ||||||||||||||||    
T  22842843 agtaataattcgtagctgagttaggttccaggacatttcttagtaggacccaaattagat-tggtattttcatcttcacttggcacaaaatcttataaat 22842745  T
Q  554 aataaacaccgaacag---aactacagaagcattattcattcacaaactataatcatgttccacaaacttgtgtttatgttgttttttcttgttacattg 650  Q
    ||||||||  ||||||   ||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  22842744 aataaacattgaacagcagaactacagaagcattgttcattcacaaacaataatcatgttcctcaagcttgtgtttatgttgttttttcttgttacattg 22842645  T
Q  651 gtggcaagtaaagataacagtttcatctataat------ggattccaatcatcacatttatatcttgatgg 715  Q
    || |||||| |||| ||||||||||||||||||      |||||||||||||  ||||| |||||||||||    
T  22842644 gtagcaagtgaagacaacagtttcatctataataatagaggattccaatcatttcatttgtatcttgatgg 22842574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 479 - 715
Target Start/End: Complemental strand, 22876567 - 22876326
Alignment:
Q  479 gttccaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaaaatctt------ataaataataaacaccgaacagaac 572  Q
    ||||||||| |||||||||||||  ||||||||| | |||||||||| |||||||| ||||||||| |       ||||||||||||||   ||||||||    
T  22876567 gttccaggacatttcttagtaggatccaaattagacttgcaattttttcttcacttaggacaaaatatataaataataaataataaacaatcaacagaac 22876468  T
Q  573 tacagaagcattattcattcacaaactataatcatgttccacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataacagtt 672  Q
    | || |||||||||| || ||||||||||||||||||||  ||  |||||||| |||||||||| ||||||||||||||| |||||| |||| |||||||    
T  22876467 tgcataagcattatt-atccacaaactataatcatgttcttcaggcttgtgttcatgttgttttatcttgttacattggtagcaagtgaagaaaacagtt 22876369  T
Q  673 tcatctataatggattccaatcatcacatttatatcttgatgg 715  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  22876368 tcatctataatggattccaatcatcaaatttatatcttgatgg 22876326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 413 - 632
Target Start/End: Complemental strand, 22886210 - 22885988
Alignment:
Q  413 cagatgataaggcaatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggatatttcttagtaggtcccaaattag 512  Q
    |||||||||||||||||| || |||     || ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| ||| ||||||    
T  22886210 cagatgataaggcaattttagtaac-----catgtgatgtttcttttagtaataattcgtagctaggttctaggaaatttcttagtaggacccgaattag 22886116  T
Q  513 gcatgcaatttttacttcactttggacaaaatcttataaataataaacac--------cgaacagaactacagaagcattattcattcacaaactataat 604  Q
     |||||||||||| |||||||| | |||||||||||||||||||||||||        ||||||||||||||||||||| |||||||| |||||||||||    
T  22886115 acatgcaatttttccttcacttagcacaaaatcttataaataataaacaccgaacactcgaacagaactacagaagcatgattcattctcaaactataat 22886016  T
Q  605 catgttccacaaacttgtgtttatgttg 632  Q
    |||||||| || ||||||||| ||||||    
T  22886015 catgttcctcagacttgtgttcatgttg 22885988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 476 - 715
Target Start/End: Complemental strand, 22894606 - 22894354
Alignment:
Q  476 taggttccaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaaaatcttata--------------aataataaaca 561  Q
    ||||||||| || ||||||||||||| |||||||||| | |||||||||| |||||| | |||||||||||||||              |||||||||||    
T  22894606 taggttccaagacatttcttagtaggacccaaattagacttgcaattttttcttcacctaggacaaaatcttatacataataaataataaataataaaca 22894507  T
Q  562 ccgaacagaactacagaagcattattcattcacaaactataatcatgttccacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaa 661  Q
    | ||||||||||  | |||||||||| |||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||  ||||| |    
T  22894506 ctgaacagaactgtataagcattatt-attcacaaactataatcatgttcctcaggcttgtgtttatgttgttttttcttgttacattggtaccaagtga 22894408  T
Q  662 agataacagtttcatctataatggattccaatcatcacatttatatcttgatgg 715  Q
    ||| || ||||||||||||||||  ||||||||||| ||||| |||||||||||    
T  22894407 agacaaaagtttcatctataatgatttccaatcatctcatttgtatcttgatgg 22894354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 554 - 715
Target Start/End: Complemental strand, 22898836 - 22898673
Alignment:
Q  554 aataaacaccgaacagaactacagaagcattattcattcacaaacta---taatcatgttccacaaacttgtgtttatgttgttttttcttgttacattg 650  Q
    |||||||||  ||||||||||||||| ||||||| ||||||||||||   |||||||||||| ||| |||| ||| ||||||||||||| ||||||||||    
T  22898836 aataaacactaaacagaactacagaatcattatt-attcacaaactactataatcatgttcctcaagcttgcgttcatgttgttttttcatgttacattg 22898738  T
Q  651 gtggcaagtaaagataacagtttcatctataatggattccaatcatcacatttatatcttgatgg 715  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22898737 gtagcaagtaaagataacagtttcatctataatggtttccaatcatcacatttatatcttgatgg 22898673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 261 - 410
Target Start/End: Complemental strand, 22810543 - 22810396
Alignment:
Q  261 tagacgacattgatgttttaatttcacacattcaatttagcatcaaacacttaatatgaatacgttgaaaaatattcccccactactacagatggaaaga 360  Q
    |||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||    
T  22810543 tagacgactttgatgatttaatttcacatattcaatttagcatcgaacacttaatatgtaaacgttgaaaaacattcccccgctactacagatggaaaga 22810444  T
Q  361 aaatttgtgcttcgaatgtgctcatttattcaaatgtgtaacacattcat 410  Q
    |||  |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  22810443 aaa--tgtggttcaaatgtgcacatttattcaaatgtgtaacacattcat 22810396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 548 - 715
Target Start/End: Complemental strand, 22889868 - 22889702
Alignment:
Q  548 ataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgttccacaaacttgtgtttatgttgttttttcttgttaca 647  Q
    |||||||| |||||  |||| |||||  | |||||||||| |||||||| ||||||||||||||| || || |||||| ||||||||||||| |||||||    
T  22889868 ataaataagaaacaatgaaccgaactgtataagcattatt-attcacaacctataatcatgttcctcagacatgtgttcatgttgttttttcatgttaca 22889770  T
Q  648 ttggtggcaagtaaagataacagtttcatctataatggattccaatcatcacatttatatcttgatgg 715  Q
    ||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22889769 ttggttgcaagtgaagacaacagtttcatatataatggattccaatcatcacatttatatcttgatgg 22889702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 476 - 682
Target Start/End: Complemental strand, 22873794 - 22873589
Alignment:
Q  476 taggttccaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaaaatcttataaataataaacaccgaacagaactac 575  Q
    |||||||| |||||||||| || |||  ||||||  | | ||||| |||| |||||||| |||||||||| |||||||||||||||| ||| |||||| |    
T  22873794 taggttccgggatatttctaagcaggaaccaaatgtgacctgcaaatttttcttcacttaggacaaaatcatataaataataaacactgaatagaactgc 22873695  T
Q  576 agaagcattattcattcacaaactataatcatgttccacaaacttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataacagtttca 675  Q
    | |||||||||| |||||||| | ||||||||||||| ||  |||||| | |||||||||| |||||||||||| || |||||| |||| ||||||||||    
T  22873694 ataagcattatt-attcacaatccataatcatgttcctcaggcttgtgctcatgttgttttatcttgttacattagtagcaagtgaagacaacagtttca 22873596  T
Q  676 tctataa 682  Q
    |||||||    
T  22873595 tctataa 22873589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 476 - 587
Target Start/End: Complemental strand, 22841286 - 22841175
Alignment:
Q  476 taggttccaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaaaatcttataaataataaacaccgaacagaactac 575  Q
    |||||||||||| ||||||||||||| ||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |    
T  22841286 taggttccaggacatttcttagtaggacccaaataagacttgcaattttttcttcactttggacaaaatcttataaataataaacactgaacataactgc 22841187  T
Q  576 agaagcattatt 587  Q
    | ||| ||||||    
T  22841186 ataagaattatt 22841175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 251 - 380
Target Start/End: Complemental strand, 22859261 - 22859131
Alignment:
Q  251 tttaagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacactt--aatatgaatacgttgaaaaatattcccccactacta 348  Q
    |||||||| |||||| ||||| |||||||||||||||| ||||||||| |||||||  ||||  |||||  | ||||||||||| |||||||||||||||    
T  22859261 tttaagaaattagacaacattaatgttttaatttcacatattcaattttgcatcaag-acttcgaatatataaacgttgaaaaacattcccccactacta 22859163  T
Q  349 cagatggaaagaaaatttgtgcttcgaatgtg 380  Q
    ||||||||||||||||||||| ||| ||||||    
T  22859162 cagatggaaagaaaatttgtggttcaaatgtg 22859131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 22816350 - 22816243
Alignment:
Q  127 gtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaa 226  Q
    ||||||||  || |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||   |||||| ||||||||||||    
T  22816350 gtcaaaacccacttatatctttttatccttccaccacgtattaattcatcattttatttgcagcataatcaatagtaataggtcaaggccacacattcaa 22816251  T
Q  227 gtttgaaa 234  Q
    || |||||    
T  22816250 gtgtgaaa 22816243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 519 - 715
Target Start/End: Complemental strand, 22881158 - 22880974
Alignment:
Q  519 aatttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgttccacaaac 618  Q
    ||||||| |||||||| ||||||||||||||||||  | |||| |    ||||||||||||| ||||||||||||||||||||||    |||            
T  22881158 aattttttcttcacttaggacaaaatcttataaatt-tgaacatc----agaactacagaagtattattcattcacaaactataa----gtt-------- 22881076  T
Q  619 ttgtgtttatgttgttttttcttgttacattggtggcaagtaaagataacagtttcatctat------aatggattccaatcatcacatttatatcttga 712  Q
     ||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||      ||||||||||| ||||||||||||||||||||    
T  22881075 -tgtgtttatgttgttttttcttgttacattgatagcaagtgaagaaaacagtttcatctataaatacaatggattccattcatcacatttatatcttga 22880977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 131 - 364
Target Start/End: Complemental strand, 22886524 - 22886284
Alignment:
Q  131 aaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatc-------aatagtaacttgtcaagtccacacatt 223  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||       |||||||||| ||||||||||||||||    
T  22886524 aaaccaacatatatctttttatctttccaccacatattcattcatcatttgatttgaagcataatcaataatcaatagtaactggtcaagtccacacatt 22886425  T
Q  224 caagtttgaaaaggnnnnnnnnnncactttaagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacacttaatatgaatac 323  Q
    || | || ||||             | | |||||| |||||  ||||||||  || ||||||||| ||||||||||||||||||||||||||||| | |     
T  22886424 caggatt-aaaaaaaaacactacttattctaagaaattagaacacattgataattaaatttcacatattcaatttagcatcaaacacttaatatgtaaat 22886326  T
Q  324 gtt-gaaaaatattcccccactactacagatggaaagaaaat 364  Q
    |||  ||||| |||| ||||||||||| | |||||| |||||    
T  22886325 gttaaaaaaacattcacccactactactgttggaaaaaaaat 22886284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 22806199 - 22806079
Alignment:
Q  260 ttagacgacattgatgttttaatttcacacattcaatttagcatcaaacacttaatatgaatacgttgaaaaatattcccccactactacagatggaaag 359  Q
    |||||| ||| |||||| || |||||||| ||||||||||||||||||||||||||||| | || |||||||| |||  ||||||||||||  |||||||    
T  22806199 ttagacaacactgatgtcttgatttcacatattcaatttagcatcaaacacttaatatgtaaacattgaaaaacatttacccactactacaattggaaag 22806100  T
Q  360 aaaatttgtgcttcgaatgtg 380  Q
    |||||||||| ||| ||||||    
T  22806099 aaaatttgtggttcaaatgtg 22806079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 179 - 380
Target Start/End: Complemental strand, 22843135 - 22842942
Alignment:
Q  179 ttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaagtttgaaaaggnnnnnnnnnncactttaagaatttagacgacattgatgttt 278  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||              | |  || | | || ||||||| |||||||    
T  22843135 ttgatttgcagcataatcaatagtaactggtcaagtccacacattcaagtgtgaaa---------ttaaaaataaaaaactataaacgacatagatgttt 22843045  T
Q  279 taatttcacacattcaatttagcatcaaacacttaatatgaatacgttg-aaaaatattcccccactactacagatggaaagaaaatttgtgcttcgaat 377  Q
    | |||||||| ||||||||||||||||||||||||||||| | |  ||| ||||| |||  ||||||||||||| ||||||||||||||||| ||| |||    
T  22843044 tgatttcacatattcaatttagcatcaaacacttaatatgtaaaaattgaaaaaacatttacccactactacagttggaaagaaaatttgtggttcaaat 22842945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 22810690 - 22810585
Alignment:
Q  127 gtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaa 226  Q
    |||||||| |||||||||||||| ||||||| ||||| |||||||| ||||||| |||||||||| ||||||||||||||  | |||| |||| ||||||    
T  22810690 gtcaaaaccaacatatatctttt-atccttcaaccacgtattcattaatcattttatttgcagcaaaatcaatagtaactgctaaagtgcacatattcaa 22810592  T
Q  227 gtttgaa 233  Q
    || ||||    
T  22810591 gtgtgaa 22810585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 22894854 - 22894792
Alignment:
Q  254 aagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacacttaata 316  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22894854 aagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacactcaata 22894792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 22841545 - 22841490
Alignment:
Q  254 aagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaaca 309  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22841545 aagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaaca 22841490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 22843214 - 22843134
Alignment:
Q  143 atctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagtccacacatt 223  Q
    ||||||||||| |||||| || |||||||||||||||| |||||||||||||||||| |||||  | ||| ||||||||||    
T  22843214 atctttttatctttccacaacgtattcattcatcattttatttgcagcataatcaatggtaaccggccaattccacacatt 22843134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 22816095 - 22816032
Alignment:
Q  251 tttaagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacacttaata 316  Q
    |||||||| ||||| |||| |||||||||||||||| |  ||||||||||||||||||||||||||    
T  22816095 tttaagaaattagatgacactgatgttttaatttcata--ttcaatttagcatcaaacacttaata 22816032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 22874070 - 22874013
Alignment:
Q  177 atttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaagtttgaaa 234  Q
    |||| |||| |||||||||||||||||||  ||||||||||||||||||||| |||||    
T  22874070 attttatttacagcataatcaatagtaaccggtcaagtccacacattcaagtgtgaaa 22874013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 683 - 715
Target Start/End: Complemental strand, 22885969 - 22885937
Alignment:
Q  683 tggattccaatcatcacatttatatcttgatgg 715  Q
    |||||||||||||||||||||||||||||||||    
T  22885969 tggattccaatcatcacatttatatcttgatgg 22885937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 22899113 - 22899055
Alignment:
Q  254 aagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacacttaa 314  Q
    |||||| |||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  22899113 aagaatatagatgacattgatgttt-aatttcacatattcaatttag-atcaaacacttaa 22899055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 22810343 - 22810292
Alignment:
Q  426 aatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagcta 477  Q
    ||||| || |||| ||||| ||||||||||||| ||||||||||||||||||    
T  22810343 aattttagtaaccatgtcatgtgatgtttctttaagtaataattcgtagcta 22810292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 669 - 715
Target Start/End: Complemental strand, 22914124 - 22914078
Alignment:
Q  669 agtttcatctataatggattccaatcatcacatttatatcttgatgg 715  Q
    |||||||  |||||||| ||| |||||||||||||||||||||||||    
T  22914124 agtttcacatataatggtttcaaatcatcacatttatatcttgatgg 22914078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 425 - 715
Target Start/End: Original strand, 21150029 - 21150304
Alignment:
Q  425 caatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggatatttcttagtaggtcccaaattaggcatgcaatttt 524  Q
    |||||| || |||| ||||| ||||||||||||| |||||||||||||||||||||||| ||| |||||||||                |||||||||||    
T  21150029 caattttagtaaccatgtcatgtgatgtttcttttagtaataattcgtagctaggttcccggacatttcttaga---------------catgcaatttt 21150113  T
Q  525 tacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgttccacaaacttgtgt 624  Q
    | |||||||| | |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||    
T  21150114 tccttcacttagcacaaaatcttataaataataaacatcaaacagaactacagaagcattgttcattcacaaactataatcatgttcctcaagcttgtgt 21150213  T
Q  625 ttatgttgttttttcttgttacattggtggcaagtaaagataacagtttcatctataatggattccaatcatcacatttatatcttgatgg 715  Q
    |||||||||||  ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21150214 ttatgttgtttaatcttgttacattggtagcaagtgaagataacagtttcatctataatggattccaatcatcacatttatatcttgatgg 21150304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 21149819 - 21149910
Alignment:
Q  255 agaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacacttaatatgaatacgttgaaaaatattcccccactac 346  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | | || |||||||| |||| ||||||||    
T  21149819 agaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacacttaacacgtaaacattgaaaaacattcacccactac 21149910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 42447390 - 42447348
Alignment:
Q  30 aataacaaatgcatttagtaatttgtagtgagtcttatattta 72  Q
    ||||| |||||||| |||||||||||| |||||||||||||||    
T  42447390 aataataaatgcatctagtaatttgtaatgagtcttatattta 42447348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 4523964 - 4523922
Alignment:
Q  36 aaatgcatttagtaatttgtagtgagtcttatatttaaggaca 78  Q
    |||||||| ||||||||||||| |||||||||||||| |||||    
T  4523964 aaatgcatctagtaatttgtagcgagtcttatatttagggaca 4523922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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