View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3962_low_10 (Length: 437)
Name: NF3962_low_10
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3962_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 35280137 - 35279722
Alignment:
| Q |
10 |
gcagagatggagtttgaagaagaggttgttcatcgaaaaagagatcaagggtacgggagaggacagttacgtgcgaaagagtgtagctagcatgataggt |
109 |
Q |
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| T |
35280137 |
gcagagatggagtttgaagaagaggttgttcatcgaaaaagaggtcaagggtacgggagaggacagttacgtgcgaaaaagtgtagctagcatgataggt |
35280038 |
T |
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| Q |
110 |
ttaacgtttcctatcaagtctgtaacccaactataattaagggttaaaatatcaaaatggcaacgtgataagattaatagtaagtcaaatttannnnnnn |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||| |
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| T |
35280037 |
ttaacgtttcctatcaagtctgtaacccaactataattaaggattaaaatatcaaaatggcaacatgatgagattaatagtaagtcaattttttttttct |
35279938 |
T |
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| Q |
210 |
--ctattgatgcgtcaaaatgcgaaattaagatatgatagaactgttttatcatatcatatctctccaccatgtgcaccaaacggatctgtagtctaact |
307 |
Q |
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| T |
35279937 |
tcctattgatgcgtcaaaatgcgaaattaagatatgatagaactgttttatcatatcatatctttccaccatgtgcaccaaacggatctgtagtctaact |
35279838 |
T |
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| Q |
308 |
acgtaacaaacacaacactttacactcggatacaatgtcgtgctttgtgggtctaaataacacaatcatttttaaaatttatagaatgatataaaataca |
407 |
Q |
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| T |
35279837 |
acgtaacaaacacaacattttacactcggatacaatgtcgtgctttgtgggtctaaataacacaatcatttttaaaatttatagaatgatataaaataca |
35279738 |
T |
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| Q |
408 |
ataataatgacataag |
423 |
Q |
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| T |
35279737 |
ataataatgacataag |
35279722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 19181546 - 19181586
Alignment:
| Q |
253 |
ttttatcatatcatatctctccaccatgtgcaccaaacgga |
293 |
Q |
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| T |
19181546 |
ttttatcatatcatgtctctctatcatgtgcaccaaacgga |
19181586 |
T |
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