View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3962_low_13 (Length: 374)
Name: NF3962_low_13
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3962_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 51122275 - 51122622
Alignment:
| Q |
17 |
agatttgtttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatcacatttgtgtcctcatccttaattttctttgaattt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51122275 |
agatttgtttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatcacatttgtgtcctcatccttatttttctttgaattt |
51122374 |
T |
|
| Q |
117 |
tttgtctcaagcttgcagaaaatggcaattcaatttaaacaaaaggtgactgcaagctttgttcaacatatattttcatttgtttgtacatctgcattat |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51122375 |
tttgtctcaggcttgcagaaaatggcaattcaatttaaacaaaaggtgactgcaagctttgttcaacatatattttcacttgtttgtacatctgcattat |
51122474 |
T |
|
| Q |
217 |
atcttgaaacaccacatgattttactgtcattttgaatcagtgaattgagatactaaaacataattcttagtactacttactcattgcattgatattaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51122475 |
atcttgaaacaccacatgattttactgtcattttgaatcagtgaattgagataccaaaacgcaattcttagtactacttactcattgcattgatattaaa |
51122574 |
T |
|
| Q |
317 |
taatactctactgcattatggcacctttgaccaactctactgcctttg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51122575 |
taatactctactgcattatggcacctttgaccaactctactgcctttg |
51122622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 132 - 364
Target Start/End: Complemental strand, 34947568 - 34947333
Alignment:
| Q |
132 |
cagaaaatggcaattcaatttaaacaaaaggtgactgcaagctttgttcaacatatattttcatttgtttgtacatctgcattatatcttgaaacaccac |
231 |
Q |
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| T |
34947568 |
cagaaaatggcaattcaatttaaacaaaaggtgactgcaggctttgttcaacatataatttcacttgtttgtacatctgcattatattttgaaacaccac |
34947469 |
T |
|
| Q |
232 |
atgattttactgtcattttgaatcagtgaattgagatactaaaacataattcttagtactacttactcattgcattgatattaaataatactctactgca |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
34947468 |
atgattttactgtcattttgaatcagtgaactgagataccaaaacgtaattcttagtactacttactaattgcattgatattaaataatactctattgca |
34947369 |
T |
|
| Q |
332 |
ttatggcacctttg---accaactctactgcctttg |
364 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |
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| T |
34947368 |
ttatggcacctttgaccaccaactctactgcctttg |
34947333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 30369346 - 30369498
Alignment:
| Q |
18 |
gatttgtttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatcacatttgtgtcctcatccttaattttctttgaatttt |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
30369346 |
gatttgcttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttttaatcacatttgtgtcctcatccttagttttctttgaatttt |
30369445 |
T |
|
| Q |
118 |
ttgtctcaagcttgcagaaaatggcaattcaatttaaacaaaaggtgactgca |
170 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30369446 |
ttgtctcagacttgcagaaaatggcaattcaatttaaacaaaaggtgactgca |
30369498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 132 - 354
Target Start/End: Original strand, 21529911 - 21530134
Alignment:
| Q |
132 |
cagaaaatggcaattcaatttaaacaaaaggtgactgcaagctttgttcaacatatattttcatttgtttgtacatctgcattatatcttgaaacaccac |
231 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
21529911 |
cagaaaatgacaatttaatttaaacaaaaggtgactgcaagctttgttcaacatagaatttcacttgtttgtgcatctgcattatatcttgaaacaccac |
21530010 |
T |
|
| Q |
232 |
atgattttactgtcattttgaatcagtgaattgagatactaaaacataattcttagtactacttactcattgcattgatattaaataatactctactgca |
331 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
21530011 |
atgactttactgtcattttgaaacagtgaactgagataccaaaacgtaattcttagtactgcttactcattacattgatattaaataatactctactgca |
21530110 |
T |
|
| Q |
332 |
ttatggcaccttt-gaccaactct |
354 |
Q |
| |
|
|||||| | |||| |||||||||| |
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|
| T |
21530111 |
ttatggtatctttagaccaactct |
21530134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 38827468 - 38827620
Alignment:
| Q |
18 |
gatttgtttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatcacatttgtgtcctcatccttaattttctttgaatttt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38827468 |
gatttgcttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatcacatttgtgtcctcatccttagttttctttgaatttt |
38827567 |
T |
|
| Q |
118 |
ttgtctcaagcttgcagaaaatggcaattcaatttaaacaaaaggtgactgca |
170 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38827568 |
ttgtctcaggcttgcagaaaatggcaattcaatttaaacaaaaggttactgca |
38827620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 39016396 - 39016296
Alignment:
| Q |
18 |
gatttgtttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatcacatttgtgtcctcatccttaattttctttgaatttt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
39016396 |
gatttgcttgtgacatggtatatattatagtttattaacatatttatattgaggtttgtaatcacatttgtgtcctcatccttagttttcattgaatttt |
39016297 |
T |
|
| Q |
118 |
t |
118 |
Q |
| |
|
| |
|
|
| T |
39016296 |
t |
39016296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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