View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3962_low_15 (Length: 317)

Name: NF3962_low_15
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3962_low_15
NF3962_low_15
[»] chr7 (7 HSPs)
chr7 (1-307)||(47905966-47906272)
chr7 (1-307)||(47908738-47909044)
chr7 (181-287)||(47911153-47911259)
chr7 (62-124)||(47899483-47899545)
chr7 (235-282)||(47916063-47916110)
chr7 (181-286)||(47899309-47899414)
chr7 (66-126)||(47911326-47911386)
[»] chr5 (1 HSPs)
chr5 (73-214)||(39403205-39403346)
[»] chr3 (4 HSPs)
chr3 (195-286)||(41706173-41706264)
chr3 (196-255)||(35351697-35351756)
chr3 (199-287)||(35374793-35374881)
chr3 (204-286)||(35356839-35356921)
[»] chr1 (2 HSPs)
chr1 (63-124)||(31209493-31209554)
chr1 (211-286)||(31209653-31209728)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 47906272 - 47905966
Alignment:
Q  1 cctcctcctccttgagcgaaagggagaaccttcgatatgacgttgacacaatgatggtggtggaggaggaggctccacagggcttacatgagtttgttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47906272 cctcctcctccttgagcgaaagggagaaccttcgatatgacgtcgacacaatgatggtggaggaggaggaggctccacagggcttacatgagtttgttat 47906173  T
Q  101 aaatcttattccgtctttcatctacaatactactattaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagataatgatcatgttcgt 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47906172 aaatcttattccgtctttcatctacaatactactactaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagataatgatcatgttcgt 47906073  T
Q  201 accctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47906072 accctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgtc 47905973  T
Q  301 atctctg 307  Q
    |||||||    
T  47905972 atctctg 47905966  T

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Target: chr7; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 47909044 - 47908738
Alignment:
Q  1 cctcctcctccttgagcgaaagggagaaccttcgatatgacgttgacacaatgatggtggtggaggaggaggctccacagggcttacatgagtttgttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  47909044 cctcctcctccttgagcgaaagggagaaccttcgatatgacgtcgacacaataatggtggaggaggaggaggctccacagggcttacatgagtttgttat 47908945  T
Q  101 aaatcttattccgtctttcatctacaatactactattaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagataatgatcatgttcgt 200  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47908944 aaatcttattctgtctttcatctacaatactactactaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagataatgatcatgttcgt 47908845  T
Q  201 accctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47908844 accctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgtc 47908745  T
Q  301 atctctg 307  Q
    |||||||    
T  47908744 atctctg 47908738  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 47911259 - 47911153
Alignment:
Q  181 aagataatgatcatgttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatg 280  Q
    |||||||| ||||  | |||||||||||| ||||||| |||| ||| |||| | |||||||||| |||||||| ||||||||| ||| ||||||| ||||    
T  47911259 aagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtcctgtatg 47911160  T
Q  281 tcgctcc 287  Q
    |||||||    
T  47911159 tcgctcc 47911153  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 47899545 - 47899483
Alignment:
Q  62 ggaggaggaggctccacagggcttacatgagtttgttataaatcttattccgtctttcatcta 124  Q
    |||||||||||||||||| |||||| |||||| ||||||| ||  ||||||||| ||||||||    
T  47899545 ggaggaggaggctccacatggcttagatgagtctgttatatatgctattccgtccttcatcta 47899483  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 47916110 - 47916063
Alignment:
Q  235 attgcattgatgtttggcttcgttcaaacactaactgtcctctatgtc 282  Q
    ||||||||| |||||||||||||| |||| ||||||||||| ||||||    
T  47916110 attgcattgttgtttggcttcgtttaaaccctaactgtcctatatgtc 47916063  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 47899414 - 47899309
Alignment:
Q  181 aagataatgatcatgttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatg 280  Q
    |||||||||||||  |||| | ||| ||  |||||||||||| ||| |||| | |||| || || |||||||||||||||||| |||  |||||| | ||    
T  47899414 aagataatgatcacattcgcatccttccgttttgctcccacactttccatctcaattgtatcgacgtttggcttcgttcaaaccctagttgtcctttgtg 47899315  T
Q  281 tcgctc 286  Q
    ||||||    
T  47899314 tcgctc 47899309  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 47911386 - 47911326
Alignment:
Q  66 gaggaggctccacagggcttacatgagtttgttataaatcttattccgtctttcatctaca 126  Q
    ||||||| | ||||||||||| | |||| |||||||||   ||||||||||||||||||||    
T  47911386 gaggaggttgcacagggcttagacgagtctgttataaaagctattccgtctttcatctaca 47911326  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 39403346 - 39403205
Alignment:
Q  73 ctccacagggcttacatgagtttgttataaatcttattccgtctttcatctacaatactactattaagtctgaacaagaaacttgttccgtttgcttgac 172  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||| | |||||||| ||||||| ||||| |||||||||      
T  39403346 ctccacagggcttacatgagtttgttataaatcatataccatctttcatctacaatactgctacttagtctgaaaaagaaacgtgttcagtttgcttggt 39403247  T
Q  173 tgaattcaaagataatgatcatgttcgtaccctccctctttg 214  Q
    |||||||| |||||||||||  ||||||||| | ||||||||    
T  39403246 tgaattcatagataatgatcgagttcgtaccatacctctttg 39403205  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 41706264 - 41706173
Alignment:
Q  195 gttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctc 286  Q
    |||||||| || ||||| || ||||||| ||||||||  || |||||||||| ||||||||||||| || ||||||||||||| ||||||||    
T  41706264 gttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttcgttcacacgctaactgtcctctctgtcgctc 41706173  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 35351697 - 35351756
Alignment:
Q  196 ttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttc 255  Q
    |||| |||||||||||||| ||||||||||| |||| || ||||||||||| ||||||||    
T  35351697 ttcgcaccctccctctttgttcccacattttccatctcgcttgcattgatgcttggcttc 35351756  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 35374793 - 35374881
Alignment:
Q  199 gtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcc 287  Q
    |||| ||||||||||| |||||||  || |||| ||| |||||||| | ||||||||||  |||  |||| ||||||||||||||||||    
T  35374793 gtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacctaattgtcctctatgtcgctcc 35374881  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 35356839 - 35356921
Alignment:
Q  204 ctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctc 286  Q
    ||||||||||| ||||||| ||| |||| || ||||||||||| |||||||| |  | |  |||| |||||||||||||||||    
T  35356839 ctccctctttgttcccacactttccatctcgcttgcattgatgcttggcttcataaacaacctaattgtcctctatgtcgctc 35356921  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 31209493 - 31209554
Alignment:
Q  63 gaggaggaggctccacagggcttacatgagtttgttataaatcttattccgtctttcatcta 124  Q
    ||||||||||||||||| |||||| |||||| ||||||| ||  ||||||||| ||||||||    
T  31209493 gaggaggaggctccacatggcttagatgagtctgttatatatgctattccgtccttcatcta 31209554  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 31209653 - 31209728
Alignment:
Q  211 tttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctc 286  Q
    |||||||||||| ||| |||| | |||| ||||| |||||||||||||| ||| ||| ||||||| | ||||||||    
T  31209653 tttgctcccacactttccatctcaattgtattgacgtttggcttcgttctaaccctagctgtcctttgtgtcgctc 31209728  T

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