View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3962_low_16 (Length: 283)
Name: NF3962_low_16
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3962_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 23422069 - 23422318
Alignment:
| Q |
19 |
gaaaagatacagatccatttgccattcttcccacgtgacactcctctgcatccagcaagactcctagtccctcctttatatgtgccatcagtgttaaaat |
118 |
Q |
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| T |
23422069 |
gaaaagatacagatccatttgccattcttcccacgtgacactcctctgcatccagcaagactcc------ctcctttatatgtgccatcagtgttaaaat |
23422162 |
T |
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| Q |
119 |
ggatccaactactttcaggggcctaccacttgatactttccaaaacagtcattata---tggtgttatgctcagaagcagttttagcactaattgcataa |
215 |
Q |
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| T |
23422163 |
ggatccaactactttcaggggcctaacacttgatactttccaaaacagtcattatatggtggtgttatgctcagaagcagttttagccctaactgcataa |
23422262 |
T |
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| Q |
216 |
caattaacttgccaaggattactaggtgacataatatcctcatcatgcatcatttt |
271 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
23422263 |
caattaacttgccaaggattactaggcgacacaatatcctcatcatgcatcatttt |
23422318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 23876854 - 23876774
Alignment:
| Q |
155 |
tttccaaaacagtcattatatggtgttatgctcagaagcagttttagcactaattgcataacaattaacttgccaaggattac |
237 |
Q |
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| T |
23876854 |
tttccaaaacagtcattgta--gtgttctgctcagaagcagttttagcactaaccacataacaattaacacgccaaggattac |
23876774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 23883182 - 23883142
Alignment:
| Q |
226 |
gccaaggattactaggtgacataatatcctcatcatgcatc |
266 |
Q |
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| T |
23883182 |
gccaaggattactaggtgacacaaaatcctcatcatgcatc |
23883142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 23420118 - 23420156
Alignment:
| Q |
228 |
caaggattactaggtgacataatatcctcatcatgcatc |
266 |
Q |
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| T |
23420118 |
caaggattactaggtgacacaaaatcctcatcatgcatc |
23420156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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