View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3962_low_18 (Length: 239)
Name: NF3962_low_18
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3962_low_18 |
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| [»] chr6 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 33575622 - 33575384
Alignment:
| Q |
1 |
cctagaaagtaaaaatatcaatccgttgcaagaaccaacaaccagaggaaattcacttattatgggacagcggaagtggttaaaggcaacagcaattgac |
100 |
Q |
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| T |
33575622 |
cctagaaagtaaaaatatcaatccgttgtaagaaccaacaaccagaggaaattcacttattatgggacagcggaagtggttaaaggcaacagcaattgac |
33575523 |
T |
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| Q |
101 |
cgagtctcacgtacaagatgcaaggacaagacactagtctcacagtctgtaagctgtgttatcaagtgatgattttgtgatgatttcttgaggtgaaatt |
200 |
Q |
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| T |
33575522 |
ggagtctcacgtacaagatgcaaggacaagacactagtatcacggtcagtaagctgtgttattaagtgatgattttgtgatgatttcttgaggtgaaatt |
33575423 |
T |
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| Q |
201 |
tgatgaaagttggatcagagatgagagtgttccatgatt |
239 |
Q |
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| T |
33575422 |
tgatgaaagttggatcagagatgagagtgttctatgatt |
33575384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 5978301 - 5978228
Alignment:
| Q |
164 |
aagtgatgattttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatga |
237 |
Q |
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| T |
5978301 |
aagtgagggttttgtgatgacttcttaaggtgcatttcggtgaaagttggattggagatgagagtgttccatga |
5978228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 34862655 - 34862721
Alignment:
| Q |
173 |
ttttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatgatt |
239 |
Q |
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| T |
34862655 |
ttttgtgatgattggttgaggtgaattttgatgaaagatggagaggttatgagagtgttccatgatt |
34862721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 36339389 - 36339316
Alignment:
| Q |
164 |
aagtgatgattttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatga |
237 |
Q |
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| T |
36339389 |
aagtgagggttttgtgaagatttcttaaggtgcattttgatgaaagttggatctgagatgagagtgttccatga |
36339316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 553823 - 553783
Alignment:
| Q |
199 |
tttgatgaaagttggatcagagatgagagtgttccatgatt |
239 |
Q |
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| T |
553823 |
tttgatgaaagttggatcagagatgagggtgttccatgatt |
553783 |
T |
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