View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3962_low_4 (Length: 528)

Name: NF3962_low_4
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3962_low_4
NF3962_low_4
[»] chr6 (2 HSPs)
chr6 (21-528)||(3079933-3080441)
chr6 (414-475)||(324528-324589)


Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 21 - 528
Target Start/End: Original strand, 3079933 - 3080441
Alignment:
Q  21 attgctctatatgttgtgttgaatttgnnnnnnnctccaatacttttttaacgaaaattgtcaaccctagatatataagtaccatttatataataatgat 120  Q
    |||||| ||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3079933 attgctttatatcttgtgttgaatttgtttttttctccaatacttttttaacgaaaattgtcaaccctagatatataagtaccatttatataataatgat 3080032  T
Q  121 aacaaaggtaaacnnnnnnnnnnnnnnnnn-ctaatatttaaaagaacaagttgatacctgtgttaaattaagatagatcctttcccacaagttcatcta 219  Q
    |||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3080033 aacaaaggtaaacaaaaaataaaataaaaaactaatatttaaaagaacaagttgatacctgtgttaaattaagatagatcctttcccacaagttcatcta 3080132  T
Q  220 tagtgttggaccattcatatctatattaaaatccgaactaggtaattcatcagtatctaaaaatccttctgtttcctcccaatcaaatattgttctaatt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3080133 tagtgttggaccattcatatctatattaaaatccgaactaggtaattcatcagtatctaacaatccttctgtttcctcccaatcaaatattgttctaatt 3080232  T
Q  320 tgtatatcaaagtcgtccaaatcttcattattgtccaattctaatttgacattgtccccatcaaggttgctatcaccactcaattttgcaccccttgtat 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3080233 tgtatatcaaagtcgtccaaatcttcattattgtccaattctaatttgacattgtccccaccaaggttgctatcaccactcaattttgcaccccttgtat 3080332  T
Q  420 ccatagaatttatattcaagtttgtatcaattggagaattattaacatcatgaggggtggtttgactaacataagaagaagatggtatcatcatattatt 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3080333 ccatagaatttatattcaagtttgtatcaattggagaattattaacatcatgaggggtggtttgactaacataagaagaagatggtatcatcatattatt 3080432  T
Q  520 ttcactatt 528  Q
    |||||||||    
T  3080433 ttcactatt 3080441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 475
Target Start/End: Original strand, 324528 - 324589
Alignment:
Q  414 ttgtatccatagaatttatattcaagtttgtatcaattggagaattattaacatcatgaggg 475  Q
    ||||||||||| ||||||||||| | |||||||||  |||| | || |||||||||||||||    
T  324528 ttgtatccataaaatttatattcgaatttgtatcagatggaaatttgttaacatcatgaggg 324589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University