View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3962_low_6 (Length: 489)

Name: NF3962_low_6
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3962_low_6
NF3962_low_6
[»] scaffold0499 (1 HSPs)
scaffold0499 (102-392)||(2547-2837)


Alignment Details
Target: scaffold0499 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 102 - 392
Target Start/End: Complemental strand, 2837 - 2547
Alignment:
Q  102 tatgagatagagcactagtaggttgttaaccttttcttatcctataagttttcttttgtttcaacactaacttagtatatgatacaaaattnnnnnnnca 201  Q
    ||||||||||||||| ||||||||||| | ||||| |||||||||||||||||| ||||||||| |||||||||| | |||||||||||||       ||    
T  2837 tatgagatagagcaccagtaggttgttgatctttttttatcctataagttttctcttgtttcaaaactaacttagaaaatgatacaaaattaaaaaaaca 2738  T
Q  202 caaaactcaaattacatttgaaccttaacttacatgcaacgggtgcagttgcaaatgcctgtacagtttgaaattatatatcattcatcaagtctacata 301  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2737 caaaactcaaattacatttgaaccctaacttacatgcaacggctgcagttgcaaatgcctgtacagtttgaaattatatatcattcatcaagtctacata 2638  T
Q  302 ttttgtctttcgccatatctgaactcaacacacaaaaatcgttgtcttttaaaaaagcatacaataaattagtctaccattatactcttgg 392  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  2637 ttttgtctttcgccatatctgaactcaacacacaaaaatcattgtcttttaaaaaagcacacaataaaatagtctaccattatactcttgg 2547  T

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