View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3962_low_8 (Length: 465)
Name: NF3962_low_8
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3962_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 52409660 - 52409214
Alignment:
| Q |
16 |
tacttaggaggtgcatgatattaattgttatagtttaatctcctgtgatatgatgatgagagaaagaactctaattccaacatttgtcttttgggctttc |
115 |
Q |
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| T |
52409660 |
tacttaggaggtgcatgatattaattgttatagtttaatctcctgtgatatgatgatgagagaaagaactctaattccaacatttgtcttctgggctttc |
52409561 |
T |
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| Q |
116 |
cttacattaatcacaccaacacttattctcttgtcagagaattcgaaagccgaccttgaattaaatggtaacaaaccaatcttctaacttagttctaaca |
215 |
Q |
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| T |
52409560 |
cttacattaatcacaccaacacttattctcttgtcagagaattcgaaagccgaccttgaattaaatggtaacaaaccaatcttctaacttagttctaaca |
52409461 |
T |
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| Q |
216 |
cttcttattaaccaaaattgatatagttaatttgcaccttaattaggcttgtgtacaattaatctttatgtccaactttgcaggaaatattacagagaca |
315 |
Q |
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| T |
52409460 |
cttcttattaaccaaaattgatatatttaatttgcaccttaattaggcttgtgtacaattaatctttatttccaactttgcaggaaatattacagagaca |
52409361 |
T |
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| Q |
316 |
atgaaggtaagaagaatgatcgggcacacacagagtaacatcataagaacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409360 |
atgaaggtaagaagaatgatcgggcacacacagagtaacatcataagaacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcac |
52409261 |
T |
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| Q |
416 |
cagctgcaaccgtatcattattaccattgccaacttcatctcactcg |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52409260 |
cagctgcaaccgtatcattattaccattgccaacttcatcacactcg |
52409214 |
T |
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