View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3962_low_9 (Length: 459)

Name: NF3962_low_9
Description: NF3962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3962_low_9
NF3962_low_9
[»] chr6 (8 HSPs)
chr6 (11-459)||(33575695-33576143)
chr6 (53-127)||(33568841-33568915)
chr6 (185-345)||(5978666-5978826)
chr6 (77-139)||(19746857-19746919)
chr6 (263-332)||(33568636-33568705)
chr6 (8-125)||(34861965-34862082)
chr6 (370-420)||(5978591-5978641)
chr6 (247-293)||(19747033-19747079)
[»] chr3 (4 HSPs)
chr3 (8-339)||(36339760-36340091)
chr3 (368-420)||(36339679-36339731)
chr3 (64-140)||(25901429-25901505)
chr3 (64-140)||(25915447-25915523)
[»] scaffold0707 (2 HSPs)
scaffold0707 (53-127)||(5235-5309)
scaffold0707 (263-332)||(5030-5099)
[»] chr1 (2 HSPs)
chr1 (269-319)||(17954036-17954086)
chr1 (260-307)||(39379422-39379469)
[»] chr7 (7 HSPs)
chr7 (90-139)||(26237459-26237508)
chr7 (269-319)||(24035416-24035466)
chr7 (250-308)||(26237278-26237336)
chr7 (90-127)||(24016646-24016683)
chr7 (263-308)||(26229881-26229926)
chr7 (90-139)||(26256620-26256669)
chr7 (263-307)||(24391079-24391123)
[»] chr2 (1 HSPs)
chr2 (89-137)||(25376921-25376969)
[»] chr4 (2 HSPs)
chr4 (259-307)||(3557388-3557436)
chr4 (64-140)||(10571426-10571502)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Complemental strand, 33576143 - 33575695
Alignment:
Q  11 caaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  33576143 caaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccgtaggaagcaaaaattgtgtgtatgtctctgtcaaaagat 33576044  T
Q  111 caagcgaaacaatcacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagtt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576043 caagcgaaacaatcacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagtt 33575944  T
Q  211 aatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaacttaa 310  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |    
T  33575943 aatagttccactaaaatgaacaccatcatttcccaaaataggaacgaaagggaaacttcgaatatttctccaacaattatcacccgaattgaaaacttta 33575844  T
Q  311 accttgcttctccataaacctttgttctcgatctcnnnnnnnnnnnnnnnncctatttgaagtgccactaccttgtaagttccagttaaataatcataac 410  Q
    ||||||||||||||||||| |||||||||||||||                ||||| |||||||||||||||||||||||||| |||||||||||| |||    
T  33575843 accttgcttctccataaacttttgttctcgatctctttttctttatttttacctatatgaagtgccactaccttgtaagttccggttaaataatcacaac 33575744  T
Q  411 caacactgaatacaaaagtgctatccctatagtcacgaagaaacccaaa 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575743 caacactgaatacaaaagtgctatccctatagtcacgaagaaacccaaa 33575695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 33568915 - 33568841
Alignment:
Q  53 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcaca 127  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  33568915 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcaca 33568841  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 345
Target Start/End: Complemental strand, 5978826 - 5978666
Alignment:
Q  185 tagtcactgtgaatagctaaccagttaatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaac 284  Q
    ||||||| ||||||||||| ||| ||||  ||||||||  |||  ||||||||||| || | || |||||| ||||| ||||||||||| | ||||||||    
T  5978826 tagtcaccgtgaatagctagccaattaaccgttccactcaaatgcacaccatcattcccgataagaggaaccaaaggaaaactttgaatctctctccaac 5978727  T
Q  285 aattatcacccaaattgaaaacttaaaccttgcttctccataaacctttgttctcgatctc 345  Q
    ||  |||||||||| |||||||    |||||||||||||||||||||| | ||||| ||||    
T  5978726 aaaaatcacccaaactgaaaaccctcaccttgcttctccataaaccttcggtctcggtctc 5978666  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 19746857 - 19746919
Alignment:
Q  77 agcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 139  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||    
T  19746857 agcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 19746919  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 33568705 - 33568636
Alignment:
Q  263 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 332  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  33568705 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 33568636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 34861965 - 34862082
Alignment:
Q  8 aagcaaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaa 107  Q
    ||||||||||| |||| |||||| ||||   |||||| | || | |||| ||| ||||||||||| |||||||| || | | |||||||||| || ||||    
T  34861965 aagcaaaggcaatccaacagaacccgaagatatggctcagcacatggcaactctttaaaacccttgggaagcaacaaatatttgtatgtctcggtggaaa 34862064  T
Q  108 gatcaagcgaaacaatca 125  Q
    ||||||||||| ||||||    
T  34862065 gatcaagcgaagcaatca 34862082  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 5978641 - 5978591
Alignment:
Q  370 aagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 420  Q
    |||||||||||||||||| |||||||||||||||||| |||| | ||||||    
T  5978641 aagtgccactaccttgtatgttccagttaaataatcacaaccgaaactgaa 5978591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 19747033 - 19747079
Alignment:
Q  247 aataggaacgaaagggaaactttgaatatttctccaacaattatcac 293  Q
    ||||||||  ||||||||||| | |||||||||||||||||||||||    
T  19747033 aataggaatcaaagggaaactctcaatatttctccaacaattatcac 19747079  T

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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 36340091 - 36339760
Alignment:
Q  8 aagcaaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaa 107  Q
    ||||||||||||||||||||||| ||||  ||||||| | |  | |||| ||||||||||||   |||||||||||| ||  |||||||||| |||||||    
T  36340091 aagcaaaggcagtccatcagaacccgaagagatggctcaacgcatggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaa 36339992  T
Q  108 gatcaagcgaaacaatcacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaacca 207  Q
    |||||||||||||||||||  ||| ||||||| ||  ||||  || ||||  |||| |||||   ||||||| | || |||| |    || ||| |||||    
T  36339991 gatcaagcgaaacaatcaccaattgctcaacaagaggaatataagctttacttgtttctccacaatcaattgatacgaagtcgccagaaagagccaacca 36339892  T
Q  208 gttaatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaact 307  Q
    |||||||| ||||||  |||  ||||||||||| |  | || |||||| ||||||||||||||||||| |||||||||||||||||| ||| | ||||||    
T  36339891 gttaatagctccactcaaatgcacaccatcattccatataagaggaaccaaagggaaactttgaatatatctccaacaattatcaccaaaactaaaaact 36339792  T
Q  308 taaaccttgcttctccataaacctttgttctc 339  Q
       ||||||||||||||||||| || ||||||    
T  36339791 gccaccttgcttctccataaactttcgttctc 36339760  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 36339731 - 36339679
Alignment:
Q  368 tgaagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 420  Q
    ||||| |||||||||||||||||||||||||||  |||| |||||| ||||||    
T  36339731 tgaagcgccactaccttgtaagttccagttaaacgatcacaaccaaaactgaa 36339679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 25901429 - 25901505
Alignment:
Q  64 aaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaacag 140  Q
    |||||||  ||| ||||| || || ||||||| ||| || || ||||||||||||||||||||| ||| ||||||||    
T  25901429 aaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacag 25901505  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 25915447 - 25915523
Alignment:
Q  64 aaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaacag 140  Q
    |||||||  ||| ||||| || || ||||||| ||| || || ||||||||||||||||||||| ||| ||||||||    
T  25915447 aaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacag 25915523  T

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Target: scaffold0707 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 5309 - 5235
Alignment:
Q  53 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcaca 127  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  5309 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcaca 5235  T

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Target: scaffold0707; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 5099 - 5030
Alignment:
Q  263 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 332  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  5099 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 5030  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 17954036 - 17954086
Alignment:
Q  269 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 319  Q
    |||||||||||||||||||||||||||||| || |||||| ||||| ||||    
T  17954036 tgaatatttctccaacaattatcacccaaactgtaaactttaacctcgctt 17954086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 39379422 - 39379469
Alignment:
Q  260 gggaaactttgaatatttctccaacaattatcacccaaattgaaaact 307  Q
    |||||||||| |||||||||||||  ||||||||||||| ||||||||    
T  39379422 gggaaactttcaatatttctccaaacattatcacccaaactgaaaact 39379469  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 26237508 - 26237459
Alignment:
Q  90 tgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 139  Q
    ||||||||| |||||||||||||||||||| ||||||| ||| |||||||    
T  26237508 tgtatgtctttgtcgaaagatcaagcgaaagaatcacaaattgctcaaca 26237459  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 24035466 - 24035416
Alignment:
Q  269 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 319  Q
    |||||||||||||||||||||||||| | |||||||| || |||| |||||    
T  24035466 tgaatatttctccaacaattatcaccaagattgaaaattttaaccctgctt 24035416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 26237336 - 26237278
Alignment:
Q  250 aggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaactt 308  Q
    ||||||||  || ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26237336 aggaacgaccggaaaactttgaatatttctccaacagttaacacccaaactaaaaactt 26237278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 24016683 - 24016646
Alignment:
Q  90 tgtatgtctctgtcgaaagatcaagcgaaacaatcaca 127  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  24016683 tgtatgtctccgtcgaaagatcaagagaaacaatcaca 24016646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 26229926 - 26229881
Alignment:
Q  263 aaactttgaatatttctccaacaattatcacccaaattgaaaactt 308  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26229926 aaactttgaatatttctccaacagttaccacccaaactaaaaactt 26229881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 26256669 - 26256620
Alignment:
Q  90 tgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 139  Q
    |||||||||| || |||||||||||||||| ||||||| ||| |||||||    
T  26256669 tgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaaca 26256620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 24391123 - 24391079
Alignment:
Q  263 aaactttgaatatttctccaacaattatcacccaaattgaaaact 307  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||    
T  24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaact 24391079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 25376969 - 25376921
Alignment:
Q  89 gtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaa 137  Q
    ||||||||||| ||||| ||||| ||||||||||||||| |||||||||    
T  25376969 gtgtatgtctcagtcgagagatcgagcgaaacaatcacatatttctcaa 25376921  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 3557436 - 3557388
Alignment:
Q  259 agggaaactttgaatatttctccaacaattatcacccaaattgaaaact 307  Q
    ||||||||||| |||||||||||||  ||||||||| ||| ||||||||    
T  3557436 agggaaactttcaatatttctccaaacattatcacctaaactgaaaact 3557388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 10571426 - 10571502
Alignment:
Q  64 aaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaacag 140  Q
    |||||||  ||||||||| ||||  ||||||| ||| || || |||||||| |||||||||||| ||| ||||||||    
T  10571426 aaaaccccgaggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaatcacatattgctcaacag 10571502  T

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