View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_13 (Length: 462)
Name: NF3963_high_13
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Complemental strand, 42003279 - 42002836
Alignment:
| Q |
19 |
aatagagcttaaattcaaacaacttataggtggtactaaatttattacggttgaattggaaggacaatttaggaatgaaaaattaacaaaagtgtaataa |
118 |
Q |
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| T |
42003279 |
aatagagcttaaattcaaacaacttataggtggtactaaatttattacggttgaattggaaggacaatttaggaatgaaaaattaacaaaagtgtaataa |
42003180 |
T |
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| Q |
119 |
tcacttaaccgaaacggtgaatctttaaggtttaacatgaagttgttttggtcaaacatgaaacgttttgggaagcacatgttgggatcgttgacccaaa |
218 |
Q |
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| T |
42003179 |
tcacttaaccgaaacggtgaatctttaaggtttaacatgaagttgttttggtcaaacatgaaacgttttgggaagcaaatgttgggatcgttgacccaaa |
42003080 |
T |
|
| Q |
219 |
ctacttgatcaacaaaggagatgcgtttcacaacaaagctttcagaatttggaagagtgagtaagggttcactgaaggt---------ggtgttggtgca |
309 |
Q |
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| T |
42003079 |
ctacttgatcaacaaaggagatgcgtttcacaacaaagctttcagaatttggaagagtgagtaagggttcactgaaggtggtggtggtggtgttggtgca |
42002980 |
T |
|
| Q |
310 |
cgtgaggtcgaaacctgggtaactacaaagattggtttgatttgattggtttaatgaaaacggaaaccaaattggaagtccgtaggtttcgcatgatgtt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
42002979 |
cgtgaggtcgaaacctgggtaactacaaagattggtttgatttgattggtttaatgaaaacggaaaccgaattggaagtccgtaggtttcgcatgatgct |
42002880 |
T |
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| Q |
410 |
gtcctttcacaagtgaagaacttttcaccttttgttgttctgtg |
453 |
Q |
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| T |
42002879 |
gtcctttcacatgtgaagaactcttcaccttttgttgttctgtg |
42002836 |
T |
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