View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_high_18 (Length: 422)

Name: NF3963_high_18
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_high_18
NF3963_high_18
[»] chr1 (9 HSPs)
chr1 (13-422)||(29443805-29444205)
chr1 (16-370)||(29422520-29422877)
chr1 (16-182)||(29454043-29454209)
chr1 (48-370)||(29468341-29468637)
chr1 (370-422)||(29422909-29422961)
chr1 (220-290)||(29453922-29453990)
chr1 (48-121)||(29473678-29473751)
chr1 (365-403)||(29468278-29468316)
chr1 (365-422)||(29453779-29453836)
[»] chr2 (14 HSPs)
chr2 (13-165)||(12019598-12019750)
chr2 (13-182)||(12006934-12007104)
chr2 (365-422)||(12019368-12019425)
chr2 (365-422)||(9066115-9066172)
chr2 (365-422)||(11987969-11988026)
chr2 (63-182)||(11988111-11988229)
chr2 (309-374)||(9364086-9364151)
chr2 (365-422)||(9291533-9291586)
chr2 (365-422)||(12006575-12006634)
chr2 (367-422)||(9364210-9364265)
chr2 (339-372)||(9274094-9274127)
chr2 (327-372)||(10352630-10352675)
chr2 (365-422)||(9320566-9320619)
chr2 (390-422)||(12013031-12013063)
[»] chr3 (1 HSPs)
chr3 (364-422)||(37462064-37462118)


Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 29444205 - 29443805
Alignment:
Q  13 aatatcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444205 aatatcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatg 29444106  T
Q  113 tttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacggn 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29444105 tttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacgga 29444006  T
Q  213 nnnnnntaccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtctaacttaatattttttcctcaag 312  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444005 aaaaaataccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtctaacttaatattttttcctcaag 29443906  T
Q  313 agaggagggttgagtttagctattcacaaggtcaactcataaaccaacacatagcatacacacattgtcaaatacacatacataaacaaaggtagagact 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  29443905 agaggagggttgagtttagctattcacaaggtcaactcataaaccaacacatagca---------tgtcaaatacacatacataaacaaaggtagagact 29443815  T
Q  413 tcaaaataat 422  Q
    ||||||||||    
T  29443814 tcaaaataat 29443805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 29422520 - 29422877
Alignment:
Q  16 atcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgttt 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||     
T  29422520 atcacaaaagaatagtgataaaaaaataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacccaacaatgttc 29422619  T
Q  116 ttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca-----------tcatagtgagga-ttctcaact 203  Q
    ||||||      |||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||           ||||||  |||| ||| |||||    
T  29422620 ttatcc------acatagataccacgacagggttgaatagtctcaacattccgaaataagtttgacaaaataattatttcatagcaaggatttcacaact 29422713  T
Q  204 aatgacggnnnnnnntaccaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtctaacttaatatttt 303  Q
    ||||| ||        |||||||||||| ||||||||||| ||| | ||||| ||||| |||||||||||||||| |||||| || |||||| |||||||    
T  29422714 aatgaaggaaaaaaagaccaactcataccaatattatttaattaacatacttctaaagcaaaggaatcctgcaaa-tcctttggtttaacttgatatttt 29422812  T
Q  304 ttcctcaagagaggagggttgagtttagctattcacaaggtcaactcataaaccaacacatagcata 370  Q
    || |||  ||||||||||| ||||||||||| ||||  |||||||||||||||| ||||||||||||    
T  29422813 ttactc--gagaggagggtggagtttagctagtcactgggtcaactcataaacctacacatagcata 29422877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 29454209 - 29454043
Alignment:
Q  16 atcacaaaagaatagtgatcaaaaaataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgttt 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  29454209 atcacaaaagaatagtgataaaaaaataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacacaacaatgttc 29454110  T
Q  116 ttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca 182  Q
    |||||||||||||||||||||| || ||| ||| ||| || ||||||||| ||||||||||||||||    
T  29454109 ttatccttaaatacatagataccacaacagggtggaatagactcaacattccgaaataagtttgaca 29454043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 48 - 370
Target Start/End: Complemental strand, 29468637 - 29468341
Alignment:
Q  48 ttttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgtttttatccttaaatacatagatacaacgacaagg 147  Q
    |||||||| || |||||||||||||| || |||  |||||||| ||||||||||||||||||||||| ||||||      |||||||| | | |||| ||    
T  29468637 ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc------acatagatgccatgacaggg 29468544  T
Q  148 ttgaacagtctcaacatttcgaaataagtttgacatcatagtgaggattctcaactaatgacggnnnnnnntaccaactcatacaaatattatttattta 247  Q
    | |||||         |||| |||||||||||||||| |||||||||| |||||| ||||| ||        |||||||||||| |||||||| || | |    
T  29468543 tcgaaca---------tttcaaaataagtttgacatcgtagtgaggat-ctcaaccaatgaaggaaaaaaagaccaactcataccaatattatatactca 29468454  T
Q  248 gcctacttttaaagtaaaggaatcctgcaaattccttttgtctaacttaatattttttcctcaagagaggagggttgagtttagctattcacaaggtcaa 347  Q
     ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||| | ||||||||||||    
T  29468453 acctacatttaaagtaaaggaatcctgcaaa-tccttttgtctaacttaatattttttcct---------agggttgagtttagccagtcacaaggtcaa 29468364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 29422909 - 29422961
Alignment:
Q  370 acacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataat 422  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  29422909 acacacaatgtcaaatacatatacataaacaaaggtagagacttcaaaataat 29422961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 29453990 - 29453922
Alignment:
Q  220 accaactcatacaaatattatttatttagcctacttttaaagtaaaggaatcctgcaaattccttttgtct 290  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  29453990 accaactcataccaatattatttatttaacctacttttaaattaaa-gaatcctgcaaa-tccttttgtct 29453922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 29473751 - 29473678
Alignment:
Q  48 ttttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaatgtttttatcc 121  Q
    |||||||| || |||||||||||||| || |||  |||||||| ||||||||||||||||||||||| ||||||    
T  29473751 ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc 29473678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 29468316 - 29468278
Alignment:
Q  365 agcatacacacattgtcaaatacacatacataaacaaag 403  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29468316 agcatacacacattgtcaaatacatatacataaacaaag 29468278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 29453836 - 29453779
Alignment:
Q  365 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataat 422  Q
    |||||||||||||||||  ||| | ||||||||||  |||||||||||||||| ||||    
T  29453836 agcatacacacattgtcggatagatatacataaacttaggtagagacttcaaagtaat 29453779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 12019750 - 12019598
Alignment:
Q  13 aatatcacaaaagaatagtgatcaaaaa-ataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaat 111  Q
    ||||||||||| |||||||||| || || |||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  12019750 aatatcacaaatgaatagtgataaataatataaatattttgaaaggaattatacatagatttggagtaa-ttcattgcaggtaaatttctacacaacaat 12019652  T
Q  112 gtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatt 165  Q
     || ||||||||||||||| |||||| || ||| ||| ||| ||||||||||||    
T  12019651 attcttatccttaaatacacagataccacaacagggtggaatagtctcaacatt 12019598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 12007104 - 12006934
Alignment:
Q  13 aatatcacaaaagaatagtgatcaaaaa-ataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaat 111  Q
    ||||||||| | |||||||||| || || |||||||||||||||||| ||||||||||| || |||||| ||||||  ||| ||||||||||| ||||||    
T  12007104 aatatcacagatgaatagtgataaataatataaatattttgaaaggaattatacatagagttggagtaatttcattaaaggtaaatttctacagaacaat 12007005  T
Q  112 gtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca 182  Q
     || ||||||||||||||| |||||| || ||| ||| ||| | ||||||||||| |||||||||||||||    
T  12007004 attcttatccttaaatacacagataccacaacagggtggaataatctcaacattttgaaataagtttgaca 12006934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 12019425 - 12019368
Alignment:
Q  365 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataat 422  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  12019425 agcatacacacattgtcaaatacatatacataaacaaaggtagagacttcaaagtaat 12019368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 9066172 - 9066115
Alignment:
Q  365 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataat 422  Q
    ||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||    
T  9066172 agcatacacacattgtcaaatacatgtacataaacaaaggtagaaacttcaaagtaat 9066115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 11988026 - 11987969
Alignment:
Q  365 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataat 422  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  11988026 agcatacagacattgtcaaatatatatacataaacaaaggtagagacttcaaagtaat 11987969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 11988229 - 11988111
Alignment:
Q  63 tacatagattttgagtaaattcattgcaggcaaatttcta-cacaacaatgtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaa 161  Q
    ||||| ||||| |||| | ||||||||| | ||||||||| |||||||| ||| |||||||||  |||| |||||| || ||| ||| ||| |||| |||    
T  11988229 tacattgatttggagttatttcattgcaagaaaatttctaacacaacaacgttcttatcctta--tacacagataccacaacagggtagaatagtcacaa 11988132  T
Q  162 catttcgaaataagtttgaca 182  Q
    |||||||||||||||||||||    
T  11988131 catttcgaaataagtttgaca 11988111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 9364086 - 9364151
Alignment:
Q  309 caagagaggagggttgagtttagctattcacaaggtcaactcataaaccaacacatagcatacaca 374  Q
    |||||||||||||| || || ||||| ||||||||||||||| |||||| ||||||| ||||||||    
T  9364086 caagagaggagggtggacttcagctagtcacaaggtcaactcttaaaccgacacataacatacaca 9364151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 9291533 - 9291586
Alignment:
Q  365 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataat 422  Q
    |||||||||||||||||| |||    ||||||||||||||||||||||||||| ||||    
T  9291533 agcatacacacattgtcacata----tacataaacaaaggtagagacttcaaagtaat 9291586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 12006634 - 12006575
Alignment:
Q  365 agcatacacacattgtcaaatac--acatacataaacaaaggtagagacttcaaaataat 422  Q
    ||||||||||||  |||||||||  | |||||||||||||||||||||||||||| ||||    
T  12006634 agcatacacacagagtcaaatacttatatacataaacaaaggtagagacttcaaagtaat 12006575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 9364210 - 9364265
Alignment:
Q  367 catacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataat 422  Q
    |||||||||||  ||| ||||| ||||||||||||||||| |||||||||| ||||    
T  9364210 catacacacatgctcagatacatatacataaacaaaggtatagacttcaaagtaat 9364265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 9274094 - 9274127
Alignment:
Q  339 caaggtcaactcataaaccaacacatagcataca 372  Q
    |||||||||||| |||||||||||||||||||||    
T  9274094 caaggtcaactcttaaaccaacacatagcataca 9274127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 10352630 - 10352675
Alignment:
Q  327 tttagctattcacaaggtcaactcataaaccaacacatagcataca 372  Q
    |||||| | ||||||||||||||| |||| ||||||||||||||||    
T  10352630 tttagcaactcacaaggtcaactcctaaaacaacacatagcataca 10352675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 9320566 - 9320619
Alignment:
Q  365 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataat 422  Q
    |||||||||||||||||| |||    ||| ||||||||||||||||||||||| ||||    
T  9320566 agcatacacacattgtcacata----tacgtaaacaaaggtagagacttcaaagtaat 9320619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 12013063 - 12013031
Alignment:
Q  390 atacataaacaaaggtagagacttcaaaataat 422  Q
    |||||||||||||||||||||||||||| ||||    
T  12013063 atacataaacaaaggtagagacttcaaagtaat 12013031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 37462064 - 37462118
Alignment:
Q  364 tagcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataat 422  Q
    ||||||||||||||||||| |||    ||||||||||||||||||||||||||| ||||    
T  37462064 tagcatacacacattgtcacata----tacataaacaaaggtagagacttcaaagtaat 37462118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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