View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_high_19 (Length: 410)

Name: NF3963_high_19
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_high_19
NF3963_high_19
[»] chr7 (6 HSPs)
chr7 (121-316)||(28180935-28181120)
chr7 (161-269)||(30131048-30131151)
chr7 (163-271)||(30165682-30165785)
chr7 (157-269)||(30125090-30125197)
chr7 (3-78)||(30124906-30124981)
chr7 (160-269)||(30120047-30120151)
[»] chr8 (2 HSPs)
chr8 (151-271)||(43164808-43164923)
chr8 (151-271)||(41311130-41311245)
[»] chr2 (2 HSPs)
chr2 (163-269)||(21426605-21426706)
chr2 (285-341)||(21425959-21426015)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 121 - 316
Target Start/End: Original strand, 28180935 - 28181120
Alignment:
Q  121 tatcatattctacagaatctgcgcaataacaatccctataaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggca 220  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||     |||||||||||||||||||    
T  28180935 tatcatattctacagaatctgcgcgataacaatccctataaaaatcatctggaagagctatatctgacattgtcat-----ttcctttaaatcaaaggca 28181029  T
Q  221 ataataacaccaattttggtctcataattataaaccagccaatgaatagaatagaatagaaccattcaccggcaacctcaacatgatttcctttat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28181030 ataataacaccaattttggtctcataattataaaccagccaat-----gaatagaatagaaccattcaccggcaacctcaacatgatttcctttat 28181120  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 269
Target Start/End: Original strand, 30131048 - 30131151
Alignment:
Q  161 aaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagcc 260  Q
    |||||||| |||||||| ||||||||||||||||||     ||||||||||| |||||| ||||||||| |  || | ||||||||||||||||||||||    
T  30131048 aaaatcatttggaagagttatctctgacattgtcat-----ttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagcc 30131142  T
Q  261 aatgaatag 269  Q
    |||||||||    
T  30131143 aatgaatag 30131151  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 30165785 - 30165682
Alignment:
Q  163 aatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaa 262  Q
    |||||| ||||||||||||||||| |||||||  |||     ||||||||||||||||||||||||| | ||||  |||| |||||||||||||||||||    
T  30165785 aatcatttggaagagctatctctgccattgtcgcttc-----ctttaaatcaaaggcaataataacatccatttcagtctgataattataaaccagccaa 30165691  T
Q  263 tgaatagaa 271  Q
    |||||||||    
T  30165690 tgaatagaa 30165682  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 157 - 269
Target Start/End: Original strand, 30125090 - 30125197
Alignment:
Q  157 tataaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaacc 256  Q
    |||||||||||| |||||||||||| ||||||||||||  |||     ||||||||||||||||| ||||||| |  | |||||||||| ||||| ||||    
T  30125090 tataaaaatcatttggaagagctatttctgacattgtcgcttc-----ctttaaatcaaaggcaacaataacatccttgttggtctcatgattatgaacc 30125184  T
Q  257 agccaatgaatag 269  Q
    |||||||||||||    
T  30125185 agccaatgaatag 30125197  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 30124906 - 30124981
Alignment:
Q  3 tttgtaaaggatattggcaaaaagtccggagcaggatgcctagaaaaaacaagagtctgagtccaagatgaatcca 78  Q
    |||||||||||||||||  |||||| ||||||||||||| ||||||||||||||||  |||||||| | |||||||    
T  30124906 tttgtaaaggatattggggaaaagtgcggagcaggatgcatagaaaaaacaagagttcgagtccaacaggaatcca 30124981  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 30120047 - 30120151
Alignment:
Q  160 aaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagc 259  Q
    ||||||| | ||| |||||||||||||| ||||     || |||||||||||||||||||||||||||||   || |||||||||| ||||| ||||| |    
T  30120047 aaaaatcctttggcagagctatctctgatattg-----tcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacc 30120141  T
Q  260 caatgaatag 269  Q
    ||||||||||    
T  30120142 caatgaatag 30120151  T

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Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 43164808 - 43164923
Alignment:
Q  151 aatccctataaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataatta 250  Q
    |||| ||||||||||||||||||||||| |||||||||||||     || |||||||||||||| |||||||||||||| | ||||  ||||||||||||    
T  43164808 aatcactataaaaatcatctggaagagcaatctctgacattg-----tcttttcctttaaatcataggcaataataacatctatttcagtctcataatta 43164902  T
Q  251 taaaccagccaatgaatagaa 271  Q
    |||||||||||||||||||||    
T  43164903 taaaccagccaatgaatagaa 43164923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 41311130 - 41311245
Alignment:
Q  151 aatccctataaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataatta 250  Q
    |||| ||||||||| ||||||| |||||  ||||||||| ||||||     |||||||||||||||||||||||||||| | ||||  |||| || || |    
T  41311130 aatcactataaaaaccatctgggagagcagtctctgacagtgtcat-----ttcctttaaatcaaaggcaataataacatccatttcagtcttatcatca 41311224  T
Q  251 taaaccagccaatgaatagaa 271  Q
    |||||||||||||||||||||    
T  41311225 taaaccagccaatgaatagaa 41311245  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 21426706 - 21426605
Alignment:
Q  163 aatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaa 262  Q
    |||||||||||||||||||||||||||||||  ||||     ||||||||||| ||||||||||||| |    ||||||||| |||||| ||||||||||    
T  21426706 aatcatctggaagagctatctctgacattgttgtttc-----ctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaa 21426612  T
Q  263 tgaatag 269  Q
    |||||||    
T  21426611 tgaatag 21426605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 21426015 - 21425959
Alignment:
Q  285 ttcaccggcaacctcaacatgatttcctttatcacctcttggggaagatacacgctc 341  Q
    ||||||||||||||||  | ||||||||||||||| ||||  || ||||||||||||    
T  21426015 ttcaccggcaacctcagaaggatttcctttatcacttcttcaggcagatacacgctc 21425959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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