View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_high_2 (Length: 639)

Name: NF3963_high_2
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_high_2
NF3963_high_2
[»] chr4 (1 HSPs)
chr4 (3-621)||(9495861-9496493)


Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 3 - 621
Target Start/End: Complemental strand, 9496493 - 9495861
Alignment:
Q  3 aggaggagcacagaggcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatgtatgtgaatca 102  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9496493 aggaggaacacaagggcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatggatgtgaatca 9496394  T
Q  103 ccagccttcccttcaatttctccaggtaagttattacccaaagaactagaagcatcatcatccactgctgcatctgtaactgatgaagaatgcaacactt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9496393 ccagccttcccttcaatttctccaggtaagttattacccaaagaactagaagcatcatcatccactgctgaatctgtaactgatgaagaatgcaacactt 9496294  T
Q  203 tcccaggtacatcattaccagacattacataacc--------------cagtccctacaggatcaaagggagagcaaaatgttgcagctgttggagatgc 288  Q
    ||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9496293 tcccaggtacatcattaccagacattacataaccaacagtctgggtcccagtccctacaggatcaaagggagagcaaaatgttgcagctgttggagatgc 9496194  T
Q  289 taaaccatttgtactatatgaagaagagaaagcaaccatatcatccactgtcctattcatgtcagcttcacgcaaagcccataaactgtcatcagagctg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9496193 taaaccatttgtactatatgaagaagagaaagcaaccatatcatccactgtcctattcatgtcagcttcacgcaaagcccataaactgtcatcagagctg 9496094  T
Q  389 agagagggaggccgagaaaaaccttttcctggattttcagaagggttccagtacattacaccgccaccaaagtattgattataatctataccagaaacag 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9496093 agagagggaggccgagaaaaaccttttcctggattttcagaagggttccagtacattacaccgccaccaaagtattgattataatctataccagaaacag 9495994  T
Q  489 catgaaagtcatactcttcctctgatacatagaggttgtcaaattcatctgtgaactgtgtatttatttggtcaggtaaatctaatgtatccccagagta 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9495993 catgaaagtcatactcttcctctgatacatagaggttgtcaaattcatctgtgaactgtgtatttatttggtcaggtaaatccaatgtatccccagagta 9495894  T
Q  589 cctcctttcatcatcatgagttgttgcatcaac 621  Q
    |||||||||||||||||||||||||||||||||    
T  9495893 cctcctttcatcatcatgagttgttgcatcaac 9495861  T

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