View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_high_24 (Length: 350)

Name: NF3963_high_24
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_high_24
NF3963_high_24
[»] chr1 (5 HSPs)
chr1 (18-340)||(29443506-29443828)
chr1 (19-337)||(29453490-29453799)
chr1 (18-189)||(29423051-29423222)
chr1 (19-323)||(29467966-29468276)
chr1 (217-340)||(29422938-29423052)
[»] chr2 (37 HSPs)
chr2 (205-340)||(12012927-12013054)
chr2 (146-286)||(10371511-10371648)
chr2 (205-340)||(11987865-11987992)
chr2 (162-286)||(9284540-9284665)
chr2 (162-286)||(9294990-9295115)
chr2 (192-286)||(9315691-9315784)
chr2 (146-260)||(10347462-10347575)
chr2 (192-286)||(9328262-9328355)
chr2 (205-340)||(12019266-12019391)
chr2 (32-90)||(9061358-9061416)
chr2 (192-340)||(9320596-9320736)
chr2 (32-142)||(9291755-9291865)
chr2 (161-340)||(9364242-9364409)
chr2 (31-90)||(16268953-16269012)
chr2 (286-340)||(9291563-9291617)
chr2 (66-136)||(12019121-12019191)
chr2 (22-139)||(9364464-9364581)
chr2 (32-129)||(10371683-10371780)
chr2 (205-242)||(12006496-12006533)
chr2 (31-142)||(12012750-12012858)
chr2 (144-235)||(9065937-9066035)
chr2 (22-142)||(9284379-9284499)
chr2 (29-89)||(9320868-9320928)
chr2 (31-127)||(10335704-10335800)
chr2 (192-286)||(9061545-9061636)
chr2 (146-233)||(10335584-10335670)
chr2 (31-142)||(11987685-11987796)
chr2 (32-90)||(8573725-8573783)
chr2 (286-340)||(12006544-12006598)
chr2 (32-89)||(10347650-10347707)
chr2 (22-142)||(9315852-9315972)
chr2 (31-90)||(8579703-8579762)
chr2 (230-340)||(8573931-8574035)
chr2 (286-340)||(10352735-10352789)
chr2 (21-90)||(9065802-9065871)
chr2 (291-340)||(9066089-9066138)
chr2 (29-89)||(9328485-9328545)
[»] chr3 (1 HSPs)
chr3 (223-340)||(37462095-37462205)
[»] scaffold0667 (1 HSPs)
scaffold0667 (194-286)||(4117-4208)
[»] chr8 (2 HSPs)
chr8 (159-286)||(41967067-41967192)
chr8 (36-142)||(41966911-41967017)
[»] chr7 (2 HSPs)
chr7 (32-90)||(45230293-45230351)
chr7 (32-90)||(45243555-45243613)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 29443506 - 29443828
Alignment:
Q  18 caagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443506 caagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttg 29443605  T
Q  118 gaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443606 gaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaat 29443705  T
Q  218 atcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  29443706 atcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaaggattctctaa 29443805  T
Q  318 ttattttgaagtctctacctttg 340  Q
    |||||||||||||||||||||||    
T  29443806 ttattttgaagtctctacctttg 29443828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 29453490 - 29453799
Alignment:
Q  19 aagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttgg 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||   | ||||| || || |||||||||||    
T  29453490 aagtagattgtgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttgg 29453589  T
Q  119 aagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaata 218  Q
    ||||||||| | |||||| ||||||||||| |||||| | ||||||||||||||||||| |||||| |||| |||||||||| || |||||||||||||     
T  29453590 aagtcttgtgccaccttccttccccaggaaagagaattatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatt 29453689  T
Q  219 tcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaat 318  Q
    ||| |||||| || ||||||||||||||||  |||||||||  ||||||||||   ||||       ||||||||||| |||| ||||  ||||||||||    
T  29453690 tcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag--taaat-------tgaattcttattatagaacaaggattctctaat 29453780  T
Q  319 tattttgaagtctctacct 337  Q
    || ||||||||||||||||    
T  29453781 tactttgaagtctctacct 29453799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 29423222 - 29423051
Alignment:
Q  18 caagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttg 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||   ||||||| |||| ||||||||||||   | ||||| ||||| ||||||||||    
T  29423222 caagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttg 29423123  T
Q  118 gaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgatta 189  Q
    |||||||||||  |||||| ||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  29423122 gaagtcttgtatcaccttccttccctaggaaggagaatcgcacaagcaagagaaggtacttcttattgatta 29423051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 29467966 - 29468276
Alignment:
Q  19 aagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttgg 118  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||   || || | || || |||||||||||    
T  29467966 aagtagaccatgagaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatgaagctatgatttgtgttgg 29468065  T
Q  119 aagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagtttttt---------ctttgtat 209  Q
    ||||||||||| |||||| ||||| ||||| |||||||  ||||||||||||||||||||||||||||||  |||||||||||          | |||||    
T  29468066 aagtcttgtaccaccttccttccctaggaacgagaatcgcacaagcaagagaaggtacttcttattgattgtctgagttttttgagtttttgttatgtat 29468165  T
Q  210 aagttaatatca-attcaatggacccatc-----atatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcatagga 303  Q
    |||||||||||| | | |||||||| |||     |||||||||||  ||||||||||  ||||||||||||||||       ||||||||||| ||||||    
T  29468166 aagttaatatcacagttaatggacctatcatatgatatgatatatgcagttaaactc--tgttaaaaggtcaaat-------tgaattcttattatagga 29468256  T
Q  304 caattattctctaattattt 323  Q
    |||| |||||||||||||||    
T  29468257 caatgattctctaattattt 29468276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 217 - 340
Target Start/End: Complemental strand, 29423052 - 29422938
Alignment:
Q  217 tatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctcta 316  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||       ||||||||||| ||| |||||| ||||||||    
T  29423052 tatcaattcaatggaccgatcatatgatatatctagttaaactc--tgttaaaaggtcaaat-------tgaattcttattatatgacaatgattctcta 29422962  T
Q  317 attattttgaagtctctacctttg 340  Q
    ||||||||||||||||||||||||    
T  29422961 attattttgaagtctctacctttg 29422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 205 - 340
Target Start/End: Original strand, 12012927 - 12013054
Alignment:
Q  205 tgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggac 304  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||       ||||||||||| |||||||    
T  12012927 tgtataagttaatatcaattcaatggacccatcatatgatatatgtagttagactccatgtt-aaaggtcaaat-------tgaattcttattataggac 12013018  T
Q  305 aattattctctaattattttgaagtctctacctttg 340  Q
    ||  |||||||||||| |||||||||||||||||||    
T  12013019 aaggattctctaattactttgaagtctctacctttg 12013054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 146 - 286
Target Start/End: Complemental strand, 10371648 - 10371511
Alignment:
Q  146 gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgata 245  Q
    |||||||||||| |||||||||||||||||||| || ||  ||| ||||||||||  | ||||||||||||||||| ||||||||| ||||||||| |||    
T  10371648 gaaggagaatcatacaagcaagagaaggtacttattgtt--ttaactgagtttttgttgtgtataagttaatatcagttcaatggatccatcatattata 10371551  T
Q  246 tatctagttaaactccatgttaaaaggtcaaattgaattct 286  Q
    |||  ||||||||||  |||| |||||||||||||||||||    
T  10371550 tatgcagttaaactctgtgtt-aaaggtcaaattgaattct 10371511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 340
Target Start/End: Original strand, 11987865 - 11987992
Alignment:
Q  205 tgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggac 304  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  ||||| |||||||||||       ||||||| ||| |||||||    
T  11987865 tgtataagttaatatcaattcaatggacccatcatgtgatatatgtagttaaactttatgtt-aaaggtcaaat-------tgaattcctattataggac 11987956  T
Q  305 aattattctctaattattttgaagtctctacctttg 340  Q
    ||  ||| |||||||| |||||||||||||||||||    
T  11987957 aaggattttctaattactttgaagtctctacctttg 11987992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 9284540 - 9284665
Alignment:
Q  162 agcaagagaaggtacttctt-attgattacctgagtttttt-ctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaact 259  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | | || |||||||||||||||| || ||| ||||||||||    
T  9284540 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtagttaaact 9284639  T
Q  260 ccatgttaaaaggtcaaattgaattct 286  Q
      || || |||||||||||||||||||    
T  9284640 ttatatt-aaaggtcaaattgaattct 9284665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 9294990 - 9295115
Alignment:
Q  162 agcaagagaaggtacttctt-attgattacctgagtttttt-ctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaact 259  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | | || |||||||||||||||| || ||| | ||||||||    
T  9294990 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtggttaaact 9295089  T
Q  260 ccatgttaaaaggtcaaattgaattct 286  Q
    | ||| | |||||||||||||||||||    
T  9295090 ctatgct-aaaggtcaaattgaattct 9295115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 9315784 - 9315691
Alignment:
Q  192 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 286  Q
    ||||||||| || ||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||| ||| | |||||||||||||||||||    
T  9315784 tgagtttttgctatgtataagttaatgtcagttcaatggacccatcatatgatataagtagttaaactctatgct-aaaggtcaaattgaattct 9315691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 10347575 - 10347462
Alignment:
Q  146 gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgata 245  Q
    ||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||  | |||||||||| |||||| ||||||||||  ||||||| |||    
T  10347575 gaaggagaatcatccaagcaagagaaggtacttcttattgtttaactgagtttttgttgtgtataagtt-atatcagttcaatggacttatcatatcata 10347477  T
Q  246 tatctagttaaactc 260  Q
    |||  ||||||||||    
T  10347476 tatgcagttaaactc 10347462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 9328355 - 9328262
Alignment:
Q  192 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 286  Q
    ||||||||| || |||||||||| || |||||||||||||||| |||||||||||||  |||||||||| ||| | |||||||||||||||||||    
T  9328355 tgagtttttgctatgtataagttgatgtcaattcaatggacccgtcatatgatatatgaagttaaactctatgct-aaaggtcaaattgaattct 9328262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 340
Target Start/End: Original strand, 12019266 - 12019391
Alignment:
Q  205 tgtataagttaatatc-aattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcatagga 303  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||||          || |||  |||||||||| ||||||    
T  12019266 tgtataagttaacatccaattcaatggacccatcatatgatatatgtagttaaactctatgttaa----------tgtatt-ggaattcttattatagga 12019354  T
Q  304 caattattctctaattattttgaagtctctacctttg 340  Q
    |||  |||||||||||| |||||||||||||||||||    
T  12019355 caaggattctctaattactttgaagtctctacctttg 12019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 9061358 - 9061416
Alignment:
Q  32 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 90  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  9061358 gaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattccta 9061416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 192 - 340
Target Start/End: Complemental strand, 9320736 - 9320596
Alignment:
Q  192 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaatt 291  Q
    ||||||||| || ||||| |||| || ||||||||||||||||||||||||||||||  |||||||||| ||| | | |||||||||       ||||||    
T  9320736 tgagtttttgctatgtattagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgct-ataggtcaaat-------tgaatt 9320645  T
Q  292 cttatcataggacaattattctctaattattttgaagtctctacctttg 340  Q
     |||| || ||||||  || ||||||||| |||||||||||||||||||    
T  9320644 tttattatcggacaaggatactctaattactttgaagtctctacctttg 9320596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 9291865 - 9291755
Alignment:
Q  32 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaa 131  Q
    ||||||||||||||||||| | |||||||||    ||||||||||||||||||||||||   ||||| | || || |||||||||| ||||||| ||| |    
T  9291865 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 9291766  T
Q  132 ccttctttccc 142  Q
    ||||| |||||    
T  9291765 ccttccttccc 9291755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 340
Target Start/End: Complemental strand, 9364409 - 9364242
Alignment:
Q  161 aagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactc 260  Q
    |||||||||||||||||| || || ||   |||||| ||| || |||||||| || ||||  ||||||| |||||||||||||||||| || ||||||||    
T  9364409 aagcaagagaaggtacttgttgtttat---ctgagtctttgctgtgtataagcta-tatccgttcaatgaacccatcatatgatatatgtacttaaactc 9364314  T
Q  261 catgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattattttgaagtctctacctttg 340  Q
     || || |||||||||||        |||||||||| |||||||||  | |||||||||| |||||||||| ||||||||    
T  9364313 tatatt-aaaggtcaaat-------ggaattcttattataggacaaggagtctctaattactttgaagtctatacctttg 9364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 16269012 - 16268953
Alignment:
Q  31 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 90  Q
    ||||| |||||||||||||| | ||||||||| | |||||||||||||||||||||||||    
T  16269012 agaagttgttttggtatgatttgaagagtgaacgagttagttatgttgaaggaattccta 16268953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 9291617 - 9291563
Alignment:
Q  286 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttg 340  Q
    ||||||||||| |||||||||  |||||||||||| |||||||||||||||||||    
T  9291617 tgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 9291563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 12019121 - 12019191
Alignment:
Q  66 gttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaaccttc 136  Q
    |||||||||||||||||||||||||   | ||| | ||||| |||||||||||||||||||||| ||||||    
T  12019121 gttagttatgttgaaggaattcctaatttcgatgaagccatgatttgtgttggaagtcttgtaccaccttc 12019191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 9364581 - 9364464
Alignment:
Q  22 tagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaag 121  Q
    |||||||| |||||||||||||||| |||||||||||||||   |||| |  ||||  |||||||||||   || || | || || ||||||||||| ||    
T  9364581 tagatcgtaagaagctgttttggtacgatctcaagagtgaaaacgttactagtgttccaggaattcctaatatgaatgaagctatgatttgtgttggtag 9364482  T
Q  122 tcttgtacaaccttcttt 139  Q
    |||||||| |||||||||    
T  9364481 tcttgtaccaccttcttt 9364464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 10371780 - 10371683
Alignment:
Q  32 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtac 129  Q
    ||||||||||||||||||| | |||||||||   ||||||||||||||||||| | |||   ||||| |||| ||  |||||||||| ||||||||||    
T  10371780 gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtac 10371683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 12006496 - 12006533
Alignment:
Q  205 tgtataagttaatatcaattcaatggacccatcatatg 242  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12006496 tgtataagttaatatcaattcaatggacccatcatatg 12006533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 12012750 - 12012858
Alignment:
Q  31 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtaca 130  Q
    |||||||| ||||||||||| | |||||| ||   |||||||||||||||||||||||||   | ||| | || || ||||||||||||||||||||||     
T  12012750 agaagctggtttggtatgatttgaagagtcaa---gttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtacc 12012846  T
Q  131 accttctttccc 142  Q
    ||| || |||||    
T  12012847 accctccttccc 12012858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 9065937 - 9066035
Alignment:
Q  144 aggaaggagaatcaaacaagcaagagaaggtacttcttattgattacc-------tgagttttttctttgtataagttaatatcaattcaatggaccca 235  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||  |       |||||| || ||||||| |||||||||||| |||||||||||||    
T  9065937 aggaaggagaatcgaacaaccaagagaaggtacttcttatttattttctaagttttgagttcttgctttgtacaagttaatatcagttcaatggaccca 9066035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 9284379 - 9284499
Alignment:
Q  22 tagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaag 121  Q
    ||||| || |||||||| ||||||||||| | ||||||||    |||| ||||||||||||||||||||   ||||| | || || |||||||||| |||    
T  9284379 tagattgtaagaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaag 9284478  T
Q  122 tcttgtacaaccttctttccc 142  Q
    |||||| | |||||| |||||    
T  9284479 tcttgtgccaccttccttccc 9284499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 9320928 - 9320868
Alignment:
Q  29 tgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct 89  Q
    |||||||||||||||||||||| | ||||||| |   ||||||||||||||||||||||||    
T  9320928 tgagaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcct 9320868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 10335800 - 10335704
Alignment:
Q  31 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgt 127  Q
    ||||| |||||||||||||| | |||||||||    ||||||||||||||||||||||||   ||||| |  | || ||||||||||||||||||||    
T  10335800 agaagttgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtcttgt 10335704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 9061545 - 9061636
Alignment:
Q  192 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 286  Q
    ||||||||| || |||||||||| || ||| ||||||||  ||||||||| |||||| ||||||||||| ||| | |||||| ||||||||||||    
T  9061545 tgagtttttgctatgtataagttgatgtcagttcaatgg--ccatcatataatatatgtagttaaactctatgct-aaaggttaaattgaattct 9061636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 10335670 - 10335584
Alignment:
Q  146 gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacc 233  Q
    |||| ||||||  ||||||||| ||||||||||||||||| ||  ||||||||||  | |||||||||| |||||| |||||||||||    
T  10335670 gaagcagaatcgtacaagcaagggaaggtacttcttattgtttgactgagtttttgttgtgtataagtt-atatcagttcaatggacc 10335584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 11987685 - 11987796
Alignment:
Q  31 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtaca 130  Q
    |||||||| ||||||||||| | |||||||||    ||||||||||||| ||||||||||   | ||| | || || ||||||||||||||||||||||     
T  11987685 agaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattcgatgaagctatgatttgtgttggaagtcttgtacc 11987784  T
Q  131 accttctttccc 142  Q
    ||| || |||||    
T  11987785 accctccttccc 11987796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 8573725 - 8573783
Alignment:
Q  32 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 90  Q
    ||||||||||||||||||| | |||||||||   || ||||||||||||||||||||||    
T  8573725 gaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattccta 8573783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 12006544 - 12006598
Alignment:
Q  286 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttg 340  Q
    |||||||||||  ||||||||  |||||||||||| |||||||||||||||||||    
T  12006544 tgaattcttattttaggacaaggattctctaattactttgaagtctctacctttg 12006598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 10347707 - 10347650
Alignment:
Q  32 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct 89  Q
    ||||||||||||||||||| | |||||||||    |||||||||||||||||||||||    
T  10347707 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcct 10347650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 9315972 - 9315852
Alignment:
Q  22 tagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaag 121  Q
    ||||| || ||||||||||||||| |||  | | |||||||   |||| |||||||||||||||| |||   ||||| | || || |||||||||| |||    
T  9315972 tagattgtaagaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttgaaag 9315873  T
Q  122 tcttgtacaaccttctttccc 142  Q
    |||||||| |||||| |||||    
T  9315872 tcttgtaccaccttccttccc 9315852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 8579703 - 8579762
Alignment:
Q  31 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 90  Q
    ||||||||||||||||||||||||| ||||||   |||| || |||| ||||||||||||    
T  8579703 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattccta 8579762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 340
Target Start/End: Original strand, 8573931 - 8574035
Alignment:
Q  230 gacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattattttgaagt 329  Q
    ||||||||||||||||||| | ||||||||| ||| | |||||||||||| |||||| |     |  ||||||||||  |||||||||||| ||||||||    
T  8573931 gacccatcatatgatatatgtggttaaactctatgct-aaaggtcaaattaaattctta-----tcacataggacaaggattctctaattactttgaagt 8574024  T
Q  330 ctctacctttg 340  Q
     | ||||||||    
T  8574025 ttatacctttg 8574035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 10352789 - 10352735
Alignment:
Q  286 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttg 340  Q
    |||||||||||||||||| ||  |||||||||||| ||||| |||| ||||||||    
T  10352789 tgaattcttatcataggataaggattctctaattactttgacgtctttacctttg 10352735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 9065802 - 9065871
Alignment:
Q  21 gtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 90  Q
    ||||||| | ||||||| |||||||||||| | |||||||||   |||| ||||||||||||| ||||||    
T  9065802 gtagatcatcagaagctcttttggtatgatttgaagagtgaacaagttatttatgttgaaggagttccta 9065871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 9066089 - 9066138
Alignment:
Q  291 tcttatcataggacaattattctctaattattttgaagtctctacctttg 340  Q
    ||||||||||||| ||  |||||||||||| |||||||| ||||||||||    
T  9066089 tcttatcataggataaagattctctaattactttgaagtttctacctttg 9066138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 9328545 - 9328485
Alignment:
Q  29 tgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct 89  Q
    |||||||||||||| ||||||| | | ||||| |   ||||||||||||||||||||||||    
T  9328545 tgagaagctgtttttgtatgattttaggagtgcacaagttagttatgttgaaggaattcct 9328485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 340
Target Start/End: Complemental strand, 37462205 - 37462095
Alignment:
Q  223 ttcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattatt 322  Q
    |||| ||||||||||||||||||||| |||||||  || ||| |||||||||||||||||       ||||| | |||||||||  |||||||||||| |    
T  37462205 ttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaa-------ttcttgttataggacaaggattctctaattact 37462113  T
Q  323 ttgaagtctctacctttg 340  Q
    ||||||||||||||||||    
T  37462112 ttgaagtctctacctttg 37462095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 4208 - 4117
Alignment:
Q  194 agttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 286  Q
    ||||||| || ||||||||||||||||  |||||||||||||||||||||| ||| |||||||||||  || |||||  ||||||||||||||    
T  4208 agtttttgctgtgtataagttaatatctgttcaatggacccatcatatgatttatttagttaaactctgtgctaaaa-ctcaaattgaattct 4117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 41967067 - 41967192
Alignment:
Q  159 acaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaac 258  Q
    ||||||||||||||||||||||| || |||| || || |||| ||||||||| ||| | || | | ||||||||||||||||  ||| || || ||||||    
T  41967067 acaagcaagagaaggtacttcttgttcattatcttagcttttgctttgtatatgtt-agattagtgcaatggacccatcatacaatacatgtacttaaac 41967165  T
Q  259 tccatgttaaaaggtcaaattgaattct 286  Q
    || ||||| |||||| ||||||||||||    
T  41967166 tctatgtt-aaaggttaaattgaattct 41967192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 41966911 - 41967017
Alignment:
Q  36 ctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaacctt 135  Q
    ||||||||||||||| | |||||||||    ||| ||||||||||||||||||||   | ||| | |||||  ||||||||||||||||||||| |||||    
T  41966911 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtcttgtaccacctt 41967010  T
Q  136 ctttccc 142  Q
    | |||||    
T  41967011 ccttccc 41967017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 45230351 - 45230293
Alignment:
Q  32 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 90  Q
    ||||||||||||||||||| |||||||||||   |||| | ||||| ||||||||||||    
T  45230351 gaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattccta 45230293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 45243613 - 45243555
Alignment:
Q  32 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 90  Q
    |||||||||||||||||||||||| ||||||    ||| ||||||| ||||||||||||    
T  45243613 gaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattccta 45243555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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