View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_25 (Length: 348)
Name: NF3963_high_25
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 13610021 - 13609700
Alignment:
| Q |
18 |
acaacctgttccactttcttggttctttgggtgatttttctttaatgatactcctgccaagttcttttaacaaacgatgcatagaaatcgtagaaaacct |
117 |
Q |
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| T |
13610021 |
acaacctgttccactttcttggttctttgggtgatttttctttaatgatactcctgccaagttcttttaacaaacgatgcatagaaatcgtagaaaacct |
13609922 |
T |
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| Q |
118 |
cccataggttattaatgatttatcaaagagaactcttaagccaatttcgggatgaaatccacgaaaatctaaaactttcttcacgtatgnnnnnnnnnnn |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13609921 |
cccataggttattaatgatttatcaaagagaactcttaagccaatttcgggatgaaatccacgaaaatctaaaactttcttcacgtatgtctcgctctct |
13609822 |
T |
|
| Q |
218 |
ncatcaaagaaacaagcaatatccagaaaaatctccttttctatatcctttagtccatcataactaagccgtagtacatccataatttctgccatgggat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13609821 |
ctatcaaagaaacaagcaatatccagaaaaatctccttttctatatcctttagtccatcataactaagccgtagtacatccataatttctgccatgggat |
13609722 |
T |
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| Q |
318 |
tctctcttaatctggcctatgc |
339 |
Q |
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||||||||||||||||| |||| |
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| T |
13609721 |
tctctcttaatctggccaatgc |
13609700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 22 - 308
Target Start/End: Complemental strand, 31245963 - 31245680
Alignment:
| Q |
22 |
cctgttccactttcttggttctttgggtgatttttctttaatgatactcctgccaagttcttttaacaaacgatgcatagaaatcgtagaaaacc--tcc |
119 |
Q |
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| T |
31245963 |
cctgttccactttcttggttctttgggtgatttttccctaacgatactcttgcctagttctttgaacaaatcatgcataaaaattctc-----ccgttct |
31245869 |
T |
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| Q |
120 |
cataggttattaatgatttatcaaagagaactcttaagccaatttcgggatgaaatccacgaaaatctaaaactttcttcacgtatgnnnnnnnnnnnnc |
219 |
Q |
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| T |
31245868 |
cacaggttatgaatgacttatcaacaagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaactttattcacgtatgtctccgatttttt |
31245769 |
T |
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| Q |
220 |
atcaaagaaacaagcaatatccagaaaaatctccttttctatatcctttagtccatcataactaagccgtagtacatccataatttctg |
308 |
Q |
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| T |
31245768 |
ataaaagaaacaagcaatatctaaaaatatatccttttctgtatcctctagtccatcaaaactaattcgaagtacatccataatatctg |
31245680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 31477747 - 31477688
Alignment:
| Q |
133 |
tgatttatcaaagagaactcttaagccaatttcgggatgaaatccacgaaaatctaaaac |
192 |
Q |
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| T |
31477747 |
tgatttatcaatgagaactcttaatccaatatcggcatgaaatccacaacaatttaaaac |
31477688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 14725022 - 14724916
Alignment:
| Q |
224 |
aagaaacaagcaatatccagaaaaatctccttttctatatcctttagtccatcataactaagccgtagtacatccataatttctgccatgggattctctc |
323 |
Q |
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||||||||||||||||| ||||| || ||||||||| ||||||||||||| ||| |||||| || |||||||||||||| |||||| | |||||||||| |
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| T |
14725022 |
aagaaacaagcaatatctagaaatatatccttttctgtatcctttagtccttcaaaactaattcgaagtacatccataatatctgcccttggattctctc |
14724923 |
T |
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| Q |
324 |
ttaatct |
330 |
Q |
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||||||| |
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| T |
14724922 |
ttaatct |
14724916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 17598740 - 17598846
Alignment:
| Q |
224 |
aagaaacaagcaatatccagaaaaatctccttttctatatcctttagtccatcataactaagccgtagtacatccataatttctgccatgggattctctc |
323 |
Q |
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||||||||||||||||| ||||| || ||||||||| ||||||||||||| ||| |||||| |||||||||||||| |||||| | |||||||||| |
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| T |
17598740 |
aagaaacaagcaatatctagaaatatatccttttctgtatcctttagtccttcaaaactaattaaaagtacatccataatatctgcccttggattctctc |
17598839 |
T |
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| Q |
324 |
ttaatct |
330 |
Q |
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||||||| |
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| T |
17598840 |
ttaatct |
17598846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 6472510 - 6472597
Alignment:
| Q |
18 |
acaacctgttccactttcttggttctttgggtgatttttctttaatgatactcctgccaagttcttttaacaaacgatgcatagaaat |
105 |
Q |
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|||||| ||||||||||||||||||||| |||||||||| ||| ||| ||| | ||||||||||| |||||| ||||||| |||| |
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| T |
6472510 |
acaaccagttccactttcttggttctttcattgatttttctctaacgatgctcttcccaagttctttgaacaaatcatgcatacaaat |
6472597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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