View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_high_27 (Length: 325)

Name: NF3963_high_27
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_high_27
NF3963_high_27
[»] chr7 (31 HSPs)
chr7 (6-309)||(46918256-46918541)
chr7 (6-225)||(40775189-40775408)
chr7 (6-198)||(47749681-47749875)
chr7 (61-198)||(24470342-24470481)
chr7 (61-198)||(24475290-24475429)
chr7 (61-198)||(28015303-28015444)
chr7 (61-212)||(49166860-49167013)
chr7 (62-226)||(35141779-35141946)
chr7 (6-223)||(25855193-25855416)
chr7 (61-213)||(10250508-10250662)
chr7 (75-190)||(8611663-8611780)
chr7 (6-151)||(7985887-7986033)
chr7 (63-212)||(23732422-23732574)
chr7 (61-151)||(47156391-47156481)
chr7 (67-151)||(30992856-30992942)
chr7 (61-212)||(35135210-35135364)
chr7 (61-196)||(38649384-38649523)
chr7 (61-151)||(44681457-44681548)
chr7 (68-185)||(21329330-21329448)
chr7 (61-196)||(23177609-23177747)
chr7 (61-211)||(33530495-33530646)
chr7 (63-176)||(8319284-8319400)
chr7 (63-210)||(37399551-37399711)
chr7 (68-170)||(29804710-29804814)
chr7 (67-152)||(26017691-26017778)
chr7 (61-107)||(43483640-43483687)
chr7 (61-106)||(9933888-9933934)
chr7 (62-107)||(39090156-39090202)
chr7 (14-135)||(42490713-42490836)
chr7 (61-171)||(41748526-41748640)
chr7 (92-151)||(43807209-43807269)
[»] chr8 (29 HSPs)
chr8 (6-225)||(31874003-31874225)
chr8 (6-215)||(9269951-9270162)
chr8 (62-212)||(9992598-9992751)
chr8 (6-185)||(36545754-36545934)
chr8 (6-151)||(8054780-8054927)
chr8 (61-211)||(32256748-32256901)
chr8 (104-177)||(10042730-10042803)
chr8 (61-198)||(16937366-16937506)
chr8 (61-194)||(37658917-37659053)
chr8 (6-176)||(44295286-44295457)
chr8 (61-185)||(13864320-13864446)
chr8 (61-203)||(15665481-15665626)
chr8 (61-176)||(31147828-31147944)
chr8 (62-185)||(37719812-37719938)
chr8 (61-211)||(23766676-23766827)
chr8 (135-212)||(37129761-37129838)
chr8 (61-151)||(5989625-5989717)
chr8 (128-184)||(14327441-14327497)
chr8 (63-189)||(26937482-26937610)
chr8 (66-114)||(2628946-2628995)
chr8 (61-133)||(16996915-16996987)
chr8 (128-185)||(32061755-32061812)
chr8 (61-176)||(3680891-3681010)
chr8 (61-181)||(284502-284624)
chr8 (61-181)||(631253-631375)
chr8 (61-181)||(817065-817187)
chr8 (61-135)||(5917769-5917843)
chr8 (63-140)||(32412797-32412875)
chr8 (122-225)||(14115883-14115984)
[»] chr3 (32 HSPs)
chr3 (61-225)||(35501786-35501952)
chr3 (63-212)||(20201087-20201239)
chr3 (63-212)||(20203269-20203421)
chr3 (6-211)||(1165369-1165576)
chr3 (61-212)||(50519723-50519876)
chr3 (6-225)||(21803452-21803671)
chr3 (63-219)||(20251577-20251737)
chr3 (63-197)||(22843999-22844137)
chr3 (75-185)||(41882449-41882561)
chr3 (6-196)||(43029632-43029824)
chr3 (62-223)||(25374098-25374261)
chr3 (61-211)||(42106046-42106199)
chr3 (8-225)||(43839493-43839708)
chr3 (61-185)||(22286777-22286902)
chr3 (63-151)||(33977951-33978039)
chr3 (61-225)||(40462022-40462191)
chr3 (104-184)||(37051586-37051666)
chr3 (61-176)||(33076276-33076399)
chr3 (63-170)||(36540701-36540809)
chr3 (6-225)||(29776663-29776868)
chr3 (61-164)||(40797015-40797120)
chr3 (61-198)||(913343-913485)
chr3 (6-221)||(47914567-47914773)
chr3 (141-226)||(27056000-27056086)
chr3 (62-170)||(53426780-53426884)
chr3 (74-184)||(1220255-1220367)
chr3 (6-107)||(32237969-32238069)
chr3 (104-176)||(43242781-43242853)
chr3 (61-107)||(28995333-28995380)
chr3 (62-138)||(14741353-14741431)
chr3 (104-176)||(1806532-1806604)
chr3 (92-151)||(45664224-45664284)
[»] scaffold0045 (1 HSPs)
scaffold0045 (61-198)||(9675-9815)
[»] chr1 (27 HSPs)
chr1 (61-194)||(33703536-33703671)
chr1 (75-225)||(44514030-44514184)
chr1 (6-211)||(22344885-22345092)
chr1 (63-225)||(14717272-14717434)
chr1 (6-151)||(44562722-44562868)
chr1 (8-151)||(5832228-5832373)
chr1 (6-151)||(630757-630904)
chr1 (63-212)||(30853811-30853964)
chr1 (61-211)||(37685122-37685275)
chr1 (61-211)||(37700243-37700396)
chr1 (62-184)||(38646546-38646670)
chr1 (65-185)||(6212917-6213039)
chr1 (67-171)||(22032123-22032229)
chr1 (61-145)||(8893294-8893380)
chr1 (67-151)||(21326468-21326554)
chr1 (63-176)||(26199567-26199677)
chr1 (66-209)||(46589109-46589256)
chr1 (159-225)||(15276558-15276625)
chr1 (62-147)||(45659041-45659128)
chr1 (74-170)||(17579744-17579842)
chr1 (67-138)||(23320448-23320521)
chr1 (61-176)||(35077917-35078033)
chr1 (104-160)||(52839409-52839465)
chr1 (61-107)||(1768006-1768053)
chr1 (25-134)||(900134-900244)
chr1 (61-141)||(49651840-49651922)
chr1 (104-148)||(13691830-13691874)
[»] chr4 (31 HSPs)
chr4 (6-211)||(9661787-9661994)
chr4 (62-198)||(16991819-16991958)
chr4 (62-211)||(28588495-28588648)
chr4 (66-208)||(43156713-43156858)
chr4 (63-198)||(4634230-4634368)
chr4 (74-212)||(1645981-1646122)
chr4 (61-185)||(54420740-54420865)
chr4 (6-151)||(23067821-23067967)
chr4 (63-225)||(37869446-37869608)
chr4 (74-212)||(3168973-3169114)
chr4 (6-176)||(14542485-14542656)
chr4 (14-176)||(34115632-34115796)
chr4 (6-149)||(41486572-41486716)
chr4 (61-185)||(51646054-51646180)
chr4 (61-198)||(46728947-46729086)
chr4 (68-176)||(6408409-6408520)
chr4 (6-113)||(38170132-38170239)
chr4 (6-114)||(31601331-31601441)
chr4 (116-211)||(1657654-1657750)
chr4 (104-211)||(29577157-29577265)
chr4 (63-171)||(30416650-30416761)
chr4 (61-185)||(35338356-35338481)
chr4 (67-151)||(52555754-52555840)
chr4 (104-185)||(3673584-3673665)
chr4 (18-107)||(20961491-20961578)
chr4 (61-140)||(26576531-26576611)
chr4 (61-107)||(40859686-40859733)
chr4 (146-211)||(9474623-9474689)
chr4 (6-206)||(4622682-4622885)
chr4 (80-151)||(4959622-4959694)
chr4 (69-151)||(42972033-42972117)
[»] chr6 (17 HSPs)
chr6 (61-225)||(16913249-16913415)
chr6 (6-225)||(20844929-20845149)
chr6 (6-225)||(548839-549057)
chr6 (61-173)||(12576505-12576619)
chr6 (63-212)||(7049180-7049331)
chr6 (69-151)||(19759783-19759867)
chr6 (61-185)||(4663847-4663973)
chr6 (74-226)||(15128189-15128344)
chr6 (62-193)||(32457598-32457732)
chr6 (63-151)||(33194600-33194690)
chr6 (61-176)||(891558-891675)
chr6 (6-151)||(13234081-13234226)
chr6 (67-151)||(32804289-32804376)
chr6 (95-212)||(32574386-32574505)
chr6 (63-172)||(10744553-10744665)
chr6 (61-151)||(8644240-8644332)
chr6 (128-227)||(32257902-32258001)
[»] chr2 (33 HSPs)
chr2 (6-211)||(25771379-25771586)
chr2 (61-190)||(27191363-27191493)
chr2 (61-190)||(27841177-27841307)
chr2 (63-211)||(42105781-42105932)
chr2 (6-198)||(3390379-3390573)
chr2 (61-185)||(6089854-6089980)
chr2 (6-211)||(40125323-40125530)
chr2 (61-226)||(5930342-5930510)
chr2 (61-212)||(25516427-25516580)
chr2 (61-211)||(37883587-37883740)
chr2 (6-196)||(27024112-27024304)
chr2 (61-195)||(10588988-10589126)
chr2 (6-225)||(3602907-3603126)
chr2 (6-151)||(7640329-7640475)
chr2 (61-212)||(41176795-41176952)
chr2 (6-194)||(41841900-41842089)
chr2 (76-184)||(3464921-3465031)
chr2 (61-185)||(44167737-44167862)
chr2 (62-198)||(19581030-19581170)
chr2 (62-176)||(26491273-26491388)
chr2 (61-212)||(43566810-43566961)
chr2 (61-223)||(34479878-34480043)
chr2 (63-211)||(25623074-25623225)
chr2 (61-172)||(29812642-29812755)
chr2 (10-151)||(9715521-9715664)
chr2 (61-141)||(29734194-29734277)
chr2 (6-160)||(16879938-16880087)
chr2 (6-52)||(5071343-5071389)
chr2 (61-160)||(13268560-13268660)
chr2 (82-185)||(36507892-36507997)
chr2 (136-185)||(44951463-44951512)
chr2 (104-160)||(15674046-15674102)
chr2 (138-225)||(24500442-24500530)
[»] chr5 (22 HSPs)
chr5 (61-213)||(33486596-33486752)
chr5 (63-198)||(6887207-6887345)
chr5 (6-211)||(31645763-31645970)
chr5 (61-195)||(41554436-41554574)
chr5 (63-211)||(18472753-18472902)
chr5 (61-213)||(41063423-41063576)
chr5 (75-185)||(28618565-28618677)
chr5 (6-176)||(19646014-19646185)
chr5 (74-212)||(2415333-2415474)
chr5 (104-185)||(34893988-34894069)
chr5 (61-171)||(4070530-4070641)
chr5 (67-149)||(4726961-4727045)
chr5 (65-173)||(37424966-37425079)
chr5 (6-151)||(29310327-29310468)
chr5 (62-151)||(41358033-41358125)
chr5 (73-185)||(6647952-6648066)
chr5 (61-173)||(15710513-15710629)
chr5 (74-161)||(41988169-41988258)
chr5 (61-171)||(8812178-8812291)
chr5 (63-107)||(14910693-14910738)
chr5 (61-94)||(28423830-28423863)
chr5 (133-198)||(34843860-34843927)
[»] scaffold0340 (1 HSPs)
scaffold0340 (61-165)||(11804-11910)
[»] scaffold0012 (1 HSPs)
scaffold0012 (61-213)||(244566-244723)
[»] scaffold0722 (1 HSPs)
scaffold0722 (67-149)||(5559-5643)
[»] scaffold1294 (1 HSPs)
scaffold1294 (61-198)||(727-867)
[»] scaffold0316 (1 HSPs)
scaffold0316 (6-147)||(12176-12318)
[»] scaffold0011 (1 HSPs)
scaffold0011 (64-198)||(10966-11103)
[»] scaffold0018 (1 HSPs)
scaffold0018 (61-208)||(137085-137235)
[»] scaffold0665 (1 HSPs)
scaffold0665 (122-225)||(1182-1283)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 46918541 - 46918256
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatagaa 105  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||       | |||||||||| ||||||||||||||||||||||||||| ||||    
T  46918541 agacgacaaacaaaccaatgttgcacaaagatgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcatttatttcaataaagggaaagagaa 46918443  T
Q  106 aacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattaggttttggtgacggcatacaag 205  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||  |||||||| |||||||||||||||||| ||       
T  46918442 aacgagttaaaggggcgattatgggtcaaaaattgactctaaatcatacctctttgatgaatgaacaagaataaactaggttttggtgacggcacac--- 46918346  T
Q  206 agagaaaaagggaaaagagaggagaggactctattaagaacatattgatattattagaggatgtgatgtgatagataattgcatcatgtgtccaatggtg 305  Q
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46918345 --------------aagagaggagaggactctattaagaacatattgatattattagaggatgtgatgtgatatataattgcatcatgtgtccaatggtg 46918260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 40775408 - 40775189
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| || || ||      
T  40775408 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaagga 40775310  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatac 202  Q
    ||||||||||| ||||| |||| ||| |||||||||||||||||||||  |||||||| || ||||||||||| |||||| ||||||||||||| |  ||    
T  40775309 aaaacgagttataggggtgattttggatcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaattagggttttggtgacgactcac 40775210  T
Q  203 aagagagaaaaagggaaaagaga 225  Q
    |||||||  ||||||||||||||    
T  40775209 aagagag--aaagggaaaagaga 40775189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 47749875 - 47749681
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| ||||  | |||||||||||||       |||||||||||| ||||||| ||||||||||||| |||||| |||    
T  47749875 agacgacgaacaaaccaacgtcgcacgaagacaacgaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttatttcaataaaagggaaagaga 47749777  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggc 198  Q
    ||| |||| || ||||| |||| ||||||||||||||||| |||||||  ||||||||||| ||||||||||| |||||| |||||| ||||||||    
T  47749776 aaaacgagatagaggggtgattttgggtcaaaaattgaccataaatcacccctctttggtggatgaaggagaagaaattagggttttcgtgacggc 47749681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 24470481 - 24470342
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| ||| ||||||||||||| ||||||||||||| ||||||| ||||| |||| |||||||||||||| ||||||||||  |||||    
T  24470481 cgaaatagatgtgaaa-tcacttatttcaataaaagggaaatagaaaaacgagttagaggggtgattttgggtcaaaaattgcccctaaatcacccctct 24470383  T
Q  159 ttggtgaatgaaggagaataaattaggttttg-gtgacggc 198  Q
    |||||| ||||||||||| ||| |||| |||| ||||||||    
T  24470382 ttggtggatgaaggagaagaaactagggtttgtgtgacggc 24470342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 24475429 - 24475290
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| ||| ||||||||||||| ||||||||||||| ||||||| ||||| |||| |||||||||||||| ||||||||||  |||||    
T  24475429 cgaaatagatgtgaaa-tcacttatttcaataaaagggaaatagaaaaacgagttagaggggtgattttgggtcaaaaattgcccctaaatcacccctct 24475331  T
Q  159 ttggtgaatgaaggagaataaattaggttttg-gtgacggc 198  Q
    |||||| ||||||||||| ||| |||| |||| ||||||||    
T  24475330 ttggtggatgaaggagaagaaactagggtttgtgtgacggc 24475290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 28015444 - 28015303
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    ||||||||||||  |||||| ||||||||||||| |||||||||||||  | ||||| ||||| |||| ||| |||||||||||||||||||||  ||||    
T  28015444 cgaaatagatgtgtaaatcacttatttcaataaaagggaaatagaaaaaacaagttagaggggtgattttggatcaaaaattgaccctaaatcacccctc 28015345  T
Q  158 tttggtgaatgaaggagaataaatta-ggttttggtgacggc 198  Q
    ||| ||| ||||||| ||| |||||| |||||||||| ||||    
T  28015344 tttagtggatgaaggtgaaaaaattagggttttggtggcggc 28015303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 49167013 - 49166860
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| ||| ||||||||||||| ||||||||||||| | ||||| ||||| |||| | |||||||||||||||||||||||  | |||    
T  49167013 cgaaatagatgtgaaa-tcacttatttcaataaaagggaaatagaaaaacaagttagaggggtgattttaggtcaaaaattgaccctaaatcacccatct 49166915  T
Q  159 ttggtgaatgaaggagaataaattaggttttg-gtgacggcatacaagagagaaa 212  Q
    |||||| ||||||||||| ||| |||| |||| ||||||||  ||| ||||||||    
T  49166914 ttggtggatgaaggagaagaaactagggtttgtgtgacggctcacaggagagaaa 49166860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 226
Target Start/End: Original strand, 35141779 - 35141946
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaaggga-aataga---aaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    ||||||||||| ||||||| ||||||||||||| ||  || |||   ||| |||||| | ||| |||| | |||||||||||||||||||||||  | ||    
T  35141779 gaaatagatgtgaaaatcacttatttcaataaaaggttaaaagacaaaaatgagttagaagggtgatttttggtcaaaaattgaccctaaatcacccttc 35141878  T
Q  158 tttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaaaagggaaaagagag 226  Q
    ||||||||||||||||||||||| || | |||||||||||||  |||  |||||||||||||||| ||||    
T  35141879 tttggtgaatgaaggagaataaactatgattttggtgacggctcaca--agagaaaaagggaaaaaagag 35141946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 25855193 - 25855416
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| |||| ||  ||||||||||||       |||||||||| | ||||||| ||||||||||||| |||||| |||    
T  25855193 agacgacgaacaaaccaacgtcgcacgaagacgacaaaatcacaaaataaaaaa-cgaaatagatatgaaaatcacttatttcaataaaagggaaagaga 25855291  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaat----catacctctttggtgaatgaaggagaataaa-ttaggttttggtgacggc 198  Q
    ||| ||||||| ||||  |||| ||| |||||||||||||||||||    ||  ||||||||||| ||||||||||| ||| | |||||| |||||| ||    
T  25855292 aaaacgagttagagggatgattttggatcaaaaattgaccctaaatcacccacccctctttggtggatgaaggagaaaaaactaaggtttcggtgacagc 25855391  T
Q  199 atacaagagagaaaaagggaaaaga 223  Q
       ||||||||| ||||||||||||    
T  25855392 tcgcaagagagagaaagggaaaaga 25855416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 10250508 - 10250662
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||||||||| ||| |||| ||| ||||||| ||| ||||| |||| ||| || ||||||||||||  ||||  ||| |    
T  10250508 cgaaatagatgtgaaaatcacttatttcaataaaaaggaattagaaaaacgaattagaggggtgattttggatcgaaaattgaccctttatca-cccttt 10250606  T
Q  159 ttggtgaatgaaggagaataaatt-aggttttggtgacggcatacaagagagaaaa 213  Q
    || ||| |||||| |||||||||| ||||||||||||||||  |||||||||||||    
T  10250607 ttagtggatgaagaagaataaattaaggttttggtgacggctaacaagagagaaaa 10250662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 8611663 - 8611780
Alignment:
Q  75 aaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaagg 172  Q
    |||||| ||||||||||||| ||||||||||||| ||||||| ||||| |||  |||||||||||  ||||||||||||  ||||||| ||| |||||||    
T  8611663 aaatcacttatttcaataaaagggaaatagaaaaacgagttagaggggtgatattgggtcaaaaagagaccctaaatcacccctctttcgtggatgaagg 8611762  T
Q  173 agaataaattaggttttg 190  Q
    |||| ||| |||| ||||    
T  8611763 agaagaaactagggtttg 8611780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 7986033 - 7985887
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaata-aagggaaatag- 103  Q
    ||||||| |||||||||| ||  ||| ||||||| |||||||||||||        ||||||||||| ||||||||||||||||||| |||||||| ||     
T  7986033 agacgacgaacaaaccaacgtcacacgaagatgacgaaatcacaaaatacaaaat-gaaatagatgtgaaaatcatttatttcaatagaagggaaagaga 7985935  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    ||||||||||| ||||  | || | |||||||| ||||||||||||||    
T  7985934 aaaacgagttagagggatggttttaggtcaaaagttgaccctaaatca 7985887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 23732422 - 23732574
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaagg-gaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| |||||||  ||||||||||||   |||| |||||| ||||||| ||  | |||| || |||||||||||||| |||||||  |||||||    
T  23732422 aaatagatgtgaaaatcacatatttcaataaaatagaaagagaaaaacgagttagagaagtgattttgagtcaaaaattgaccttaaatcacccctcttt 23732521  T
Q  161 ggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
    | |||||||||  ||| |||| | |||||||||||||||  ||||||||||||    
T  23732522 gatgaatgaagttgaagaaatgagggttttggtgacggctcacaagagagaaa 23732574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 47156481 - 47156391
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||||||||| ||||||| |||||||||| ||||| |||||| |||||||||| ||||  |||| ||| ||||||||||||| |||||||    
T  47156481 cgaaatagatgtgaaaatcacttatttcaataaaaggaaaatag-aaacgagttagagggatgattttggatcaaaaattgaccttaaatca 47156391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 30992856 - 30992942
Alignment:
Q  67 agatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||| ||||||| ||||||||||||| ||||||||||||| | ||||| ||||| |||| ||||||||||||| ||| |||||||    
T  30992856 agatgtgaaaatcacttatttcaataaaagggaaatagaaaaacaagttagaggggtgattttgggtcaaaaattaaccttaaatca 30992942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 35135210 - 35135364
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaag-ggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| |||||||  ||||||||||||  ||||| | |||| |||| || | | |||||| | |||||||||||||| ||||||||  |||||    
T  35135210 cgaaatagatgtgaaaatcacgtatttcaataaaaaggaaagataaaaacgagctagaagagcgattttaggtcaaaaattgactctaaatcactcctct 35135309  T
Q  159 ttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
    | | || ||||||||||||||  || ||||||||||||  | |||||||||||||    
T  35135310 tagatggatgaaggagaataatctagggttttggtgacaacttacaagagagaaa 35135364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 38649384 - 38649523
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaa-tagaaaacg--agttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    ||||||||||||  |||||| ||||||||||||| ||||| |||||||    | ||| ||||| |||| |||||||||||||||| ||||||||  |||     
T  38649384 cgaaatagatgtgtaaatcacttatttcaataaaaggaaaatagaaaaaataaattagaggggtgattttgggtcaaaaattgactctaaatcacccctt 38649483  T
Q  158 tttggtgaatgaaggagaataaattagg-ttttggtgacg 196  Q
    ||| ||  ||||||| ||| |||||||| |||||||||||    
T  38649484 tttagttgatgaaggtgaagaaattaggattttggtgacg 38649523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 44681548 - 44681457
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||||||||| ||||||| |||||||||| ||||||||| || ||||||||||| | ||| |||| | ||||||||||||| |||||||||    
T  44681548 cgaaatagatgtgaaaatcacttatttcaataaaagggaaaaagaaaaacgagttaga-gggtgattttaggtcaaaaattgaacctaaatca 44681457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 21329330 - 21329448
Alignment:
Q  68 gatgtaaaaatcatttatttcaata-aagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtga 165  Q
    ||||| ||||||| |||||| |||| |||||||  || ||||||| ||| ||||| |||| |||||||||||||||||||||| ||  |||||||||||     
T  21329330 gatgtgaaaatcacttatttaaatagaagggaatgaggaaaacgatttagaggggtgatt-tgggtcaaaaattgaccctaaaccacccctctttggtgg 21329428  T
Q  166 atgaaggagaataaattagg 185  Q
    || || ||||| ||||||||    
T  21329429 ataaatgagaagaaattagg 21329448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 23177609 - 23177747
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaatag-aaaacgagttaaaggggcgattatgggt-caaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| ||||||||||||||| ||| || ||||| ||||| ||| | |||| |||||  ||||||||||| |||||||  | |||    
T  23177609 cgaaatagatgtgaaaatcacttatttcaataaaggaaaagagaaaaactagttagaggagtgattttgggtaaaaaaattgaccttaaatcactcatct 23177708  T
Q  159 ttggtgaatgaaggagaataaattag-gttttggtgacg 196  Q
    ||  || ||||||||||| ||| ||| ||||| ||||||    
T  23177709 ttaatggatgaaggagaagaaactagagtttttgtgacg 23177747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 33530495 - 33530646
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||||||||||| |||||||||| |||  |||| || |||||| |||| ||||| | || ||||||  |||||||||||||||||  |||||    
T  33530495 cgaaatagatgtaaaaatcacttatttcaataaaaaagaaaaagaaaaacgggttagaggggtggttttgggtc--aaattgaccctaaatcacccctct 33530592  T
Q  159 ttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaa 211  Q
    ||| |  |||||| | || ||| || ||||||||||| |||  |||||||||||    
T  33530593 ttgatagatgaagtaaaagaaactatggttttggtgatggctcacaagagagaa 33530646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 8319400 - 8319284
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaag-ggaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    ||||| |||| ||||||| |||||| ||||||  ||||| ||||||  ||||||| | ||| |||| |||||||||| |||||| |||||||  ||||||    
T  8319400 aaatatatgtgaaaatcacttattttaataaaatggaaaaagaaaaaacgagttacatgggtgattttgggtcaaaagttgaccataaatcactcctctt 8319301  T
Q  160 tggtgaatgaaggagaa 176  Q
    ||||| || ||||||||    
T  8319300 tggtggataaaggagaa 8319284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 37399711 - 37399551
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggt----------caaaaattgaccctaaatc 150  Q
    |||||||||| |||||||||||||||||| ||||||||| || ||||||||||| ||||| |||| | |||           ||||||| ||||||||||    
T  37399711 aaatagatgtgaaaatcatttatttcaataaaagggaaagagaaaaacgagttagaggggtgattttaggtaaaaaaaaaaaaaaaattaaccctaaatc 37399612  T
Q  151 atacctctttggtgaatgaaggagaataaattaggttttg-gtgacggcatacaagagaga 210  Q
    |  | ||||||||| |||||| |||| |||||||| |||| ||||||||  ||||||||||    
T  37399611 acccgtctttggtggatgaagaagaagaaattagggtttgcgtgacggctcacaagagaga 37399551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 29804710 - 29804814
Alignment:
Q  68 gatgtaaaaatcatttatttcaata-aagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtga 165  Q
    ||||| ||||||| |||||| |||| |||||||  |||||| ||| ||| ||||| ||||  ||||||||||||||||||||| ||  |||||||||||     
T  29804710 gatgtgaaaatcacttatttaaatagaagggaaggagaaaaacgatttagaggggtgatttggggtcaaaaattgaccctaaaccacccctctttggtgg 29804809  T
Q  166 atgaa 170  Q
    |||||    
T  29804810 atgaa 29804814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 26017691 - 26017778
Alignment:
Q  67 agatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcat 152  Q
    |||||| ||||||| ||||||||||||| |||||||| |||| ||| ||| ||||| |||| | ||||||||||| ||| ||||||||    
T  26017691 agatgtgaaaatcacttatttcaataaaagggaaataaaaaaacgaattagaggggtgattttaggtcaaaaattaaccataaatcat 26017778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 43483687 - 43483640
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa 107  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  43483687 cgaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaa 43483640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 9933934 - 9933888
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaa 106  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||    
T  9933934 cgaaatagatgtaaaaatcacttattttaataaaagggaaatagaaa 9933888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 39090202 - 39090156
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa 107  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  39090202 gaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaa 39090156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 42490836 - 42490713
Alignment:
Q  14 aacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgt-aaaaatcatttatttcaataaa-gggaaatagaaaa-cga 110  Q
    |||||||||| ||  ||| |||| ||||||||||||||||       |||||||||||| |||||||| ||||||| ||||| |||||| |||||| |||    
T  42490836 aacaaaccaacgtcacacgaagacgatgaaatcacaaaataaagaa-cgaaatagatgtgaaaaatcacttatttcgataaaagggaaaaagaaaaacga 42490738  T
Q  111 gttaaaggggcgattatgggtcaaa 135  Q
    |||| ||||| |||| |||||||||    
T  42490737 gttagaggggtgattttgggtcaaa 42490713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 41748526 - 41748640
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaa-tagaaaa---cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacct 156  Q
    |||||||||||| |||||||  ||||| |||||| ||||| |||||||   | | ||| ||| | |||| ||| ||||||||||||| ||||||| | ||    
T  41748526 cgaaatagatgtgaaaatcacctattttaataaaaggaaaatagaaaaaaacaatttagaggagtgattttggatcaaaaattgaccgtaaatcacatct 41748625  T
Q  157 ctttggtgaatgaag 171  Q
    |||| ||||||||||    
T  41748626 ctttagtgaatgaag 41748640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 43807209 - 43807269
Alignment:
Q  92 aaagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||| ||||||||||| ||||||| || || |||| ||||||||||||||||| |||||||    
T  43807209 aaagagaaatagaaaaacgagttagagaggtgattttgggtcaaaaattgaccataaatca 43807269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 31874225 - 31874003
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| |||||||||| |||||||||||| ||  ||||||||||||       | |||||||||| ||||||| ||||||||||||| || || ||      
T  31874225 agacgacgaacaaaccaacgttgcacaaagacgacaaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaagga 31874127  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattaggttttggtgacggcataca 203  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||   ||||||| || ||||||||||| ||| |||| ||||||||||||  |||    
T  31874126 aaaacgagttagaggggtgattttgggtcaaaaattgaccctaaatcacctctctttgatggatgaaggagaagaaactagggtttggtgacggctcaca 31874027  T
Q  204 a--gagagaaaaagggaaaagaga 225  Q
    |  |||||| ||||||||||||||    
T  31874026 attgagagagaaagggaaaagaga 31874003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 9270162 - 9269951
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| ||||  | |||||||||||||       |||||||||||| ||||||| ||||||||||||| |||||| |||    
T  9270162 agacgacgaacaaaccaacgtcgcacgaagacaacgaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttatttcaataaaagggaaagaga 9270064  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattag-gttttggtgacggcatac 202  Q
    ||| ||||||| ||||| |||| ||||||||||||||| | |||||||  ||||||||||| ||||||||||| ||| ||| ||||| ||||||||  ||    
T  9270063 aaaacgagttagaggggtgattttgggtcaaaaattgatcataaatcacccctctttggtggatgaaggagaagaaactagagttttcgtgacggctcac 9269964  T
Q  203 aagagagaaaaag 215  Q
    |||||| ||||||    
T  9269963 aagagataaaaag 9269951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 212
Target Start/End: Complemental strand, 9992751 - 9992598
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    ||||||||||| ||||||| ||||||||||||| |||||| |||||| ||||||| ||||| |||| |||||||||||||||||||||||||  || ||     
T  9992751 gaaatagatgtgaaaatcacttatttcaataaaagggaaagagaaaaacgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccccctc 9992652  T
Q  160 tggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
    |  |||||||||||||| |||||| ||| |||||||||||  ||||||||||||    
T  9992651 taatgaatgaaggagaagaaattatggtcttggtgacggctcacaagagagaaa 9992598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 36545754 - 36545934
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || ||||||||| ||  ||||||||||||       |||||||||||| ||||||| ||||||||||||| |||||| |||    
T  36545754 agacgactaacaaaccaacgtcgcacaaagacgacaaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttatttcaataaaagggaaagaga 36545852  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg 185  Q
    ||| ||||||| ||||| |||  ||||||| ||||||||| |||||||| ||||||||||| ||||||||||| ||| ||||    
T  36545853 aaaacgagttagaggggtgatattgggtcacaaattgaccttaaatcatccctctttggtggatgaaggagaagaaactagg 36545934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 8054780 - 8054927
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaata-aagggaaataga 104  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       || || |||||| ||||||| ||||||||||| ||||||||||||    
T  8054780 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaaacgtaacagatgtgaaaatcacttatttcaatataagggaaataga 8054879  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    ||| ||||||| ||||   ||| |||||||||||||||||||||||||    
T  8054880 aaaacgagttagagggataattttgggtcaaaaattgaccctaaatca 8054927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 32256748 - 32256901
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaa-attgaccctaaatcatacctc 157  Q
    |||||||||||| ||||||| ||||||||||||| |||||||| |||| | ||||| ||||| |||| ||||| |||| |||||||||||||||  ||||    
T  32256748 cgaaatagatgtgaaaatcacttatttcaataaaagggaaataaaaaaacaagttagaggggtgattttgggtaaaaaaattgaccctaaatcacccctc 32256847  T
Q  158 tttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaagagagaa 211  Q
    ||||||| ||||||  ||| ||| |||| ||||| ||||||| | ||||||||||    
T  32256848 tttggtggatgaagatgaaaaaactaggattttgatgacggc-tccaagagagaa 32256901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 10042803 - 10042730
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaat 177  Q
    ||||||||||| ||||| |||| ||||||||||||||||| |||||||  ||||||||||| ||||||||||||    
T  10042803 aaaacgagttagaggggtgattttgggtcaaaaattgaccataaatcacccctctttggtggatgaaggagaat 10042730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 16937366 - 16937506
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||||||||  |||||| |||||| | |||| ||||||||||||| | ||||| ||||  |||| ||| |||||||||||||||||||||  |||||    
T  16937366 cgaaatagatgtgtaaatcacttatttaagtaaaagggaaatagaaaaacaagttagagggatgattttggatcaaaaattgaccctaaatcacccctct 16937465  T
Q  159 ttggtgaatgaaggagaataaatta-ggttttggtgacggc 198  Q
    |||||| ||||||| ||| ||| || ||||||| |||||||    
T  16937466 ttggtggatgaaggtgaagaaactagggttttgatgacggc 16937506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 37659053 - 37658917
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||||| ||  |||||| ||||||||||||| |||||||| |||| | | ||| ||||| |||| || ||||||||||||||||||||||  |||||    
T  37659053 cgaaatagacgtgtaaatcacttatttcaataaaagggaaatataaaaacaaattagaggggtgattttgtgtcaaaaattgaccctaaatcacccctct 37658954  T
Q  159 ttggtgaatgaaggagaataaatta-ggttttggtga 194  Q
    |||||| ||||| | ||| |||||| |||||||||||    
T  37658953 ttggtggatgaaagtgaaaaaattagggttttggtga 37658917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 44295457 - 44295286
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| |||||||||||||  | || ||      
T  44295457 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaaaggaaaagga 44295359  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaa 176  Q
    ||||| ||||| || |  |||| |||||||||||||||||||||||||  |||||||| || |||||||||||    
T  44295358 aaaacaagttagagagatgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaa 44295286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 13864446 - 13864320
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| ||||||||||||| |||||||| |||| ||||||| |  || |||| ||| |||||| |||||| |||||||  |||||    
T  13864446 cgaaatagatgtgaaaatcacttatttcaataaaagggaaataaaaaaacgagttacataggtgattttggctcaaaagttgaccttaaatcacccctct 13864347  T
Q  159 ttggtgaatgaaggagaataaattagg 185  Q
    ||| | |||||||||||| ||| ||||    
T  13864346 ttgataaatgaaggagaagaaactagg 13864320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 15665626 - 15665481
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagg-gaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||| | ||||||||||||| | |||| |||||| | ||||| ||||| |||| || ||||||| ||||||||||||||  |||||    
T  15665626 cgaaatagatgtgaaaattacttatttcaataaaagtgaaagagaaaaacaagttagaggggtgattttgtgtcaaaagttgaccctaaatcacccctct 15665527  T
Q  159 ttggtgaatgaaggagaataaattag-gttttggtgacggcataca 203  Q
    ||| || |||||||  || ||| ||| |||||||||||||| ||||    
T  15665526 ttgttggatgaagggaaagaaactagagttttggtgacggcttaca 15665481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 31147828 - 31147944
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||| |||||||| |||||  |||||| ||||| | | | || ||| |||||||||||||||||||||||||| | |||    
T  31147828 cgaaatagatgtgaaaatcacttatgtcaataaaagggaacgagaaaaacgagt-agatgagcaattttgggtcaaaaattgaccctaaatcatccttct 31147926  T
Q  159 ttggtgaatgaaggagaa 176  Q
    ||| ||||||||||||||    
T  31147927 ttgatgaatgaaggagaa 31147944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 37719938 - 37719812
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaagggaa---atagaaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||||||| |||||||||||||||||||||  |||   ||| |||||||||||||   | |||| | | |||||||||||||||||||||  | ||     
T  37719938 gaaatagatgtgaaaatcatttatttcaataaaatgaaaagataaaaaacgagttaaaaaagtgattttagttcaaaaattgaccctaaatcacccgtcc 37719839  T
Q  159 ttggtgaatgaaggagaataaattagg 185  Q
    |||||| ||||||||||| ||| ||||    
T  37719838 ttggtggatgaaggagaagaaactagg 37719812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 23766827 - 23766676
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaa-tagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||| |||| ||||||| |||||| ||||||  |||| ||||||| |||||||   ||| |||| ||||||||||||||||| ||||||| | ||||    
T  23766827 cgaaataaatgtgaaaatcacttattttaataaaatgaaaatagaaaaacgagttat--gggtgattttgggtcaaaaattgaccttaaatcacatctct 23766730  T
Q  159 ttggtgaatgaaggagaataaattag-gttttggtgacggcatacaagagagaa 211  Q
    |||||| |||||| |||| ||| ||| ||||| |||||| |  |||||||||||    
T  23766729 ttggtggatgaagtagaagaaactagagtttttgtgacgactcacaagagagaa 23766676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 37129761 - 37129838
Alignment:
Q  135 aaattgaccctaaatcatacctctttggtgaatgaaggagaataaattaggttttggtgacggcatacaagagagaaa 212  Q
    |||||||||| |||||| ||||| |||||| ||||||||||||||| |||| ||| |||||| |  ||||||||||||    
T  37129761 aaattgacccaaaatcacacctccttggtggatgaaggagaataaactagggttttgtgacgcctcacaagagagaaa 37129838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 5989717 - 5989625
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttca-ataaagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||||||||| ||||||| |||||||| | ||||||||| |||||| ||||||| ||  | |||| ||||| |||||||||||||||||||    
T  5989717 cgaaatagatgtgaaaatcacttatttcataaaaagggaaagagaaaaacgagttagagatgtgattttgggttaaaaattgaccctaaatca 5989625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 14327497 - 14327441
Alignment:
Q  128 gggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattag 184  Q
    ||||||||||||||||||||| ||  ||||||||||| ||||||||||| |||||||    
T  14327497 gggtcaaaaattgaccctaaaccacccctctttggtggatgaaggagaagaaattag 14327441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 26937610 - 26937482
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaa-gggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| | ||| | ||||||||||||| |||||| || ||||||||||| ||||| |||| || ||||||| || ||||||||| |  |||||||    
T  26937610 aaatagatgtgagaattacttatttcaataaaagggaaaaaggaaaacgagttagaggggtgattttgagtcaaaacttaaccctaaataacccctcttt 26937511  T
Q  161 ggtgaatgaaggagaataaattaggtttt 189  Q
    |||| ||| |||| || ||| ||||||||    
T  26937510 ggtggatgcaggataagaaactaggtttt 26937482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 2628995 - 2628946
Alignment:
Q  66 tagatgtaaaaatcatttatttcaataaa-gggaaatagaaaacgagtta 114  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  2628995 tagatgtgaaaatcacttatttcaataaaagggaaatagaaaacgagtta 2628946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 16996915 - 16996987
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaa-tagaaaacgagttaaaggggcgattatgggtca 133  Q
    |||||||||||| ||| ||| ||||||||||||| ||||| |||||||||||||| ||||| |||| |||||||    
T  16996915 cgaaatagatgtgaaa-tcacttatttcaataaaaggaaaatagaaaacgagttagaggggtgattttgggtca 16996987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 32061812 - 32061755
Alignment:
Q  128 gggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg 185  Q
    |||||||||||||||||||||  |  ||||||||||| ||||||||||| ||||||||    
T  32061812 gggtcaaaaattgaccctaaactacccctctttggtggatgaaggagaagaaattagg 32061755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 3681010 - 3680891
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggt--caaaaattgaccctaaatcatacct 156  Q
    |||||||||||| |||||||||||||||||| ||||| ||| || ||||| ||||| ||  | |||| |||||   |||||||||| ||||||||  |||    
T  3681010 cgaaatagatgtgaaaatcatttatttcaataaaaggaaaagagaaaaacaagttagagaagtgattttgggtgaaaaaaattgactctaaatcacccct 3680911  T
Q  157 ctttggtgaatgaaggagaa 176  Q
    |||||||| ||||| |||||    
T  3680910 ctttggtggatgaaagagaa 3680891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 284502 - 284624
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaat-agaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| |||||||  |||||||| ||| | |||| |||||| |||||||||| ||  ||| ||||||||||||||| | |||||||   ||||    
T  284502 cgaaatagatgtgaaaatcacatatttcaacaaaagaaaatgagaaaaacgagttaaagcggtaattttgggtcaaaaattgatcataaatcacctctct 284601  T
Q  159 ttggtgaatgaaggagaataaat 181  Q
    || ||| ||||| ||||| ||||    
T  284602 ttagtggatgaatgagaagaaat 284624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 631375 - 631253
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaat-agaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| |||||||  |||||||| ||| | |||| |||||| |||||||||| ||  ||| ||||||||||||||| | |||||||   ||||    
T  631375 cgaaatagatgtgaaaatcacatatttcaacaaaagaaaatgagaaaaacgagttaaagcggtaattttgggtcaaaaattgatcataaatcacctctct 631276  T
Q  159 ttggtgaatgaaggagaataaat 181  Q
    || ||| ||||| ||||| ||||    
T  631275 ttagtggatgaatgagaagaaat 631253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 817187 - 817065
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaat-agaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| |||||||  |||||||| ||| | |||| |||||| |||||||||| ||  ||| ||||||||||||||| | |||||||   ||||    
T  817187 cgaaatagatgtgaaaatcacatatttcaacaaaagaaaatgagaaaaacgagttaaagcggtaattttgggtcaaaaattgatcataaatcacctctct 817088  T
Q  159 ttggtgaatgaaggagaataaat 181  Q
    || ||| ||||| ||||| ||||    
T  817087 ttagtggatgaatgagaagaaat 817065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 5917769 - 5917843
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaatagaaaacgagttaaaggggcgattatgggtcaaa 135  Q
    |||||||||||| ||||||| |  ||| | |||||||||| |||||||||| || ||||| |||| |||||||||    
T  5917769 cgaaatagatgtgaaaatcaatattttaattaaagggaaagagaaaacgagctagaggggtgattttgggtcaaa 5917843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 32412875 - 32412797
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaacgagttaaaggggcgattatgggtcaaaaattg 140  Q
    ||||| |||| ||||||| |||||||||| |||||||||  |||||||||| | ||||| |||| ||| ||||||||||    
T  32412875 aaataaatgtgaaaatcacttatttcaataaaagggaaagggaaaacgagtgagaggggtgattttggatcaaaaattg 32412797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 14115883 - 14115984
Alignment:
Q  122 gattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattag-gttttggtgacggcatacaagagagaaaaagggaaa 220  Q
    |||| ||||||||||||||| |||||||||  | ||||||||| ||||| |||||  || ||| |||| |||||||||  |||||||||  |||||||||    
T  14115883 gattttgggtcaaaaattga-cctaaatcacccatctttggtggatgaaagagaagtaactagagtttaggtgacggctcacaagagag--aaagggaaa 14115979  T
Q  221 agaga 225  Q
    |||||    
T  14115980 agaga 14115984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 35501786 - 35501952
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| |||||||||||||||| |||| |||||| |||||| ||||||| ||||| |||| ||||||||||||| |||||||||||  |||||    
T  35501786 cgaaatagatgtgaaaatcatttatttcagtaaaagggaaagagaaaaacgagttagaggggtgattttgggtcaaaaattaaccctaaatca-ccctct 35501884  T
Q  159 ttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaagagagaaaaagggaaaagaga 225  Q
    |||||| ||||||||||| ||| |||| ||| |||||||||  |||||||||| ||||||||||||||    
T  35501885 ttggtggatgaaggagaagaaactaggatttcggtgacggctcacaagagagagaaagggaaaagaga 35501952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 20201087 - 20201239
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaagg-gaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| ||||||| ||||||||||||| | |||| |||||| ||||||| ||||| |||| |||||||||||||||||||||||||  |||||||    
T  20201087 aaatagatgtgaaaatcacttatttcaataaaagtgaaagagaaaaacgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccctcttt 20201186  T
Q  161 ggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
    |||| ||||||||||| ||| || |||||| ||||||||  ||||||||||||    
T  20201187 ggtggatgaaggagaagaaactagggttttcgtgacggctcacaagagagaaa 20201239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 20203269 - 20203421
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaagg-gaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| ||||||| ||||||||||||| | |||| |||||| ||||||| ||||| |||| |||||||||||||||||||||||||  |||||||    
T  20203269 aaatagatgtgaaaatcacttatttcaataaaagtgaaagagaaaaacgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccctcttt 20203368  T
Q  161 ggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
    |||| ||||||||||| ||| || |||||| ||||||||  ||||||||||||    
T  20203369 ggtggatgaaggagaagaaactagggttttcgtgacggctcacaagagagaaa 20203421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 1165369 - 1165576
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| |||||| |||    
T  1165369 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaaaga 1165467  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatac 202  Q
    ||| | ||||| ||||| |||| |||||||||||||||||||||||||  |||||||| || ||||||||||| ||| || |||||||||||||||  ||    
T  1165468 aaaacaagttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctcac 1165567  T
Q  203 aagagagaa 211  Q
     ||||||||    
T  1165568 tagagagaa 1165576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 50519876 - 50519723
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| ||| ||||||||||||| ||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||  | |||    
T  50519876 cgaaatagatgtgaaa-tcacttatttcaataaaagggaaatagaaaaacgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccatct 50519778  T
Q  159 ttggtgaatgaaggagaataaattaggttttg-gtgacggcatacaagagagaaa 212  Q
    |||||| ||||||||||| ||| |||| |||| ||||||||  ||||||||||||    
T  50519777 ttggtggatgaaggagaagaaactagggtttgtgtgacggctcacaagagagaaa 50519723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 21803671 - 21803452
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagg-gaaataga 104  Q
    ||||||| ||||||||||||| |||| ||||  | |||||||||||||       |||||||||||| ||||||| || |||||||||| | |||| |||    
T  21803671 agacgacgaacaaaccaatgtcgcacgaagactacgaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttgtttcaataaaagagaaagaga 21803573  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatac 202  Q
    ||| ||||||| ||||| |||| |||||||||||||||| || |||||  ||||||||||  ||||||||||| ||| || |||||||||||||||  ||    
T  21803572 aaaacgagttagaggggtgattttgggtcaaaaattgacactgaatcactcctctttggtagatgaaggagaagaaactagggttttggtgacggctcac 21803473  T
Q  203 aagagagaaaaagggaaaagaga 225  Q
    |||||||  ||||||||||||||    
T  21803472 aagagag--aaagggaaaagaga 21803452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 20251737 - 20251577
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaatt-gaccctaaatcatacctctt 159  Q
    |||||||| | ||||||| |||||||||| ||||||||| |||||| ||||||| | ||| |||| ||||| ||||| | ||||||||||||  ||||||    
T  20251737 aaatagatatgaaaatcacttatttcaatcaaagggaaagagaaaaacgagttagaagggtgattttgggtaaaaaaatcgaccctaaatcacccctctt 20251638  T
Q  160 tggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaaaagggaa 219  Q
    ||||| ||||||||||||||| || ||||| |||||||||  |||||||||| ||||||||    
T  20251637 tggtggatgaaggagaataaactagggtttcggtgacggctcacaagagagagaaagggaa 20251577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 63 - 197
Target Start/End: Complemental strand, 22844137 - 22843999
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaagggaaatagaaaa---cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    |||||||||  ||||||||||||||||||||| |  |||  ||||   ||||||| ||||| |||| ||||||||||||||||| |||||||  ||||||    
T  22844137 aaatagatgcgaaaatcatttatttcaataaaagataattaaaaagaacgagttagaggggtgattttgggtcaaaaattgaccttaaatcagccctctt 22844038  T
Q  160 tggtgaatgaaggagaataaatta-ggttttggtgacgg 197  Q
    || |||||||||||||||||| || ||||||||||||||    
T  22844037 tgatgaatgaaggagaataaactagggttttggtgacgg 22843999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 41882449 - 41882561
Alignment:
Q  75 aaatcatttatttcaata-aagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaagg 172  Q
    |||||| ||||||||||| ||||||||||||||| ||||||| |||||  ||| |||||||||||||||||||||||||  |||||||| || |||||||    
T  41882449 aaatcacttatttcaatacaagggaaatagaaaaacgagttagaggggtaattttgggtcaaaaattgaccctaaatcactcctctttgatggatgaagg 41882548  T
Q  173 agaataaattagg 185  Q
    |||| ||| ||||    
T  41882549 agaagaaactagg 41882561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 43029824 - 43029632
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| || || ||      
T  43029824 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaagga 43029726  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacg 196  Q
    ||||| ||||| ||||| |||| ||||||||||| ||| |||||||||  |||||||| || ||||||||||| ||| || |||||||||||||    
T  43029725 aaaacaagttagaggggtgattttgggtcaaaaaatgatcctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 43029632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 25374098 - 25374261
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaagggaaat-agaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    ||||||||||| ||||||| ||||||||| ||| |||||  |||||| ||||||| ||||| |||| | ||||||||||| |||||||||||  | ||||    
T  25374098 gaaatagatgtgaaaatcacttatttcaagaaaaggaaaagagaaaaacgagttagaggggtgattttaggtcaaaaattaaccctaaatcacccttctt 25374197  T
Q  160 tggtgaatgaaggagaataaattag-gttttggtgacggcatacaagagagaaaaagggaaaaga 223  Q
    | |||||||||||| || ||| ||| ||||| ||||||||  |||| ||||| ||||||||||||    
T  25374198 t-gtgaatgaaggaaaagaaactagagttttagtgacggctcacaaaagagagaaagggaaaaga 25374261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 42106199 - 42106046
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    ||||||| |||| ||||||| ||||||||||||| |||||||||||||  |  |||| | ||| |||| | |||||||||||||||||||||||  ||||    
T  42106199 cgaaatatatgtgaaaatcacttatttcaataaaagggaaatagaaaaaacaggttagatgggtgattttaggtcaaaaattgaccctaaatcacccctc 42106100  T
Q  158 tttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaa 211  Q
    ||||||| ||||||  ||| ||| || ||||||||||||||| | ||||||||||    
T  42106099 tttggtggatgaagatgaagaaactagggttttggtgacggc-tccaagagagaa 42106046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 43839493 - 43839708
Alignment:
Q  8 acgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaa 106  Q
    ||||| ||||||||||  | |||| ||||||| |||||||||||||       |||||||||||| ||||||| ||||||||||||| |||||| |||||    
T  43839493 acgacgaacaaaccaacatcgcacgaagatgacgaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttatttcaataaaagggaaagagaaa 43839591  T
Q  107 a-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaa 204  Q
    | ||||||| ||||  || | ||| |||||||||||||||||||||  | ||||| ||||||||||||||| ||| || |||||||| |||| |  ||||    
T  43839592 agcgagttagagggt-gactttgg-tcaaaaattgaccctaaatcacccatctttagtgaatgaaggagaagaaactagggttttggcgacgactgacaa 43839689  T
Q  205 gagagaaaaagggaaaagaga 225  Q
    || ||  ||||||||||||||    
T  43839690 gaaag--aaagggaaaagaga 43839708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 22286777 - 22286902
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaa-tagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| | | ||||||||||||| ||||| ||||||| ||||||| |||||  ||| | |||||||||||||||||||||||  |||||    
T  22286777 cgaaatagatgtgaaatt-acttatttcaataaaaggaaaatagaaaaacgagttagaggggtaattttaggtcaaaaattgaccctaaatcacccctct 22286875  T
Q  159 ttggtgaatgaaggagaataaattagg 185  Q
    |||||| ||||||||||| ||| ||||    
T  22286876 ttggtggatgaaggagaagaaactagg 22286902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 33977951 - 33978039
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaat-aaagggaaatag--aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||||||||||||||| |||||||||| ||||||||||||  |||||||||||||||   |||| ||||||||||||||||| |||||||    
T  33977951 aaatagatgtaaaaatcacttatttcaataaaagggaaatagaaaaaacgagttaaagg---gattttgggtcaaaaattgaccttaaatca 33978039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 40462022 - 40462191
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||||||||||||| |   |||||||||||| |||||| |||||| | ||||| ||||| |||| |||||||||| ||||| ||||||||   ||||    
T  40462022 cgaaatagatgtaaaaaccgcgtatttcaataaaagggaaagagaaaaacaagttagaggggtgattttgggtcaaaatttgactctaaatcaccactct 40462121  T
Q  159 ttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaa--gagagaaaaagggaaaagaga 225  Q
    |||||| ||||| ||||| ||| |||| |||||| |||| |  ||||  |||||||||||||||||||||    
T  40462122 ttggtggatgaaagagaagaaactagggttttggcgacgtctcacaaaagagagaaaaagggaaaagaga 40462191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 37051666 - 37051586
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattag 184  Q
    ||||||| ||| ||||| ||||  ||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||    
T  37051666 aaaacgatttagaggggtgattcagggtcaaaaattgaccctaaatcatccctctttggtggatgaaagagaagaaattag 37051586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 33076399 - 33076276
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaa--tagaaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcata----- 153  Q
    |||||||||||||||||||| ||||||||||||| |||||    ||||| |||||| ||||| |||| ||| |||||| || ||||||||||| |         
T  33076399 cgaaatagatgtaaaaatcacttatttcaataaaaggaaaagaggaaaatgagttagaggggtgattttggatcaaaagttaaccctaaatcaaaatcac 33076300  T
Q  154 -cctctttggtgaatgaaggagaa 176  Q
     |||||||||||||||||||||||    
T  33076299 ccctctttggtgaatgaaggagaa 33076276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 36540701 - 36540809
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttg 161  Q
    ||||| |||| ||||||| ||||||||||||| |||||||||||||||||||| | ||  || | ||||||||||| ||||||| ||| |  ||||||||    
T  36540701 aaataaatgtgaaaatcacttatttcaataaaagggaaatagaaaacgagttagaaggttgactttgggtcaaaaactgaccctcaattaaccctctttg 36540800  T
Q  162 gtgaatgaa 170  Q
    ||| |||||    
T  36540801 gtggatgaa 36540809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 29776663 - 29776868
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatagaa 105  Q
    ||||||| ||||||| || || ||||||||||||  ||||||||||||       |||||||||||| |||| || |||||||| |||||||||| ||||    
T  29776663 agacgacgaacaaacaaacgtcgcacaaagatgacaaaatcacaaaataaaaa--cgaaatagatgtgaaaaccacttatttcagtaaagggaaagagaa 29776760  T
Q  106 aa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaa-ttaggttttggtgacggcataca 203  Q
    || ||||||| ||||| ||||            ||||||||||||||  ||||||||||| ||||||||||| ||| | ||||||| |||||||   |||    
T  29776761 aaacgagttagaggggtgatt------------ttgaccctaaatcacccctctttggtggatgaaggagaaaaaactaaggttttagtgacggttcaca 29776848  T
Q  204 agagagaaaaagggaaaagaga 225  Q
    ||||||  ||||||||||||||    
T  29776849 agagag--aaagggaaaagaga 29776868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 40797120 - 40797015
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag--aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    |||||||||||| |||||||||||||||||| ||||||||||||  ||||| ||||| ||||| |||| ||| || |||||| |||||||||||  |||     
T  40797120 cgaaatagatgtgaaaatcatttatttcaataaaagggaaatagaaaaaacaagttagaggggtgattttggctc-aaaattaaccctaaatcacccctt 40797022  T
Q  158 tttggtg 164  Q
    |||||||    
T  40797021 tttggtg 40797015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 913343 - 913485
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaacga---gttaaaggggcgattatgggtcaaaaattgaccctaaatcatacct 156  Q
    |||||||||||| ||||||| ||||||||| ||| |||||||||||||  |   |||| ||||| |||| ||||||||||||||||  | ||| |  |||    
T  913343 cgaaatagatgtgaaaatcacttatttcaaaaaaagggaaatagaaaaaaacatgttagaggggtgattttgggtcaaaaattgactatgaattacccct 913442  T
Q  157 ctttggtgaatgaaggagaataaa-ttaggttttggtgacggc 198  Q
    |||||||| ||||||  ||| ||| | ||||||||||||||||    
T  913443 ctttggtggatgaagatgaagaaactaaggttttggtgacggc 913485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 47914567 - 47914773
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaag-ggaaataga 104  Q
    ||||||||||||| |||| || |||| |||| || |||||||||||||       |||||||||||| ||||||| || ||||||||||  ||||| | |    
T  47914567 agacgacaaacaa-ccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttttttcaataaaatggaaagaaa 47914664  T
Q  105 aaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg-ttttggtgacggcataca 203  Q
    |||||||||| ||||| |||| |         |||||||||||||||  ||||||||||| ||||||||||| |||||||| |||  ||||||||  |||    
T  47914665 aaacgagttagaggggtgatttt---------attgaccctaaatcacccctctttggtggatgaaggagaagaaattaggatttctgtgacggctcaca 47914755  T
Q  204 agagagaaaaagggaaaa 221  Q
    | ||||| ||||| ||||    
T  47914756 aaagagagaaaggaaaaa 47914773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 27056000 - 27056086
Alignment:
Q  141 accctaaatcatacctctttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaagagagaaaaagggaaaagagag 226  Q
    |||||||||||  | ||| ||||| ||||||||||| |||||||| |||||||||||||  |||| ||||| ||||| |||||||||    
T  27056000 accctaaatcacccttctctggtggatgaaggagaaaaaattagggttttggtgacggctcacaaaagagagaaaggaaaaagagag 27056086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 53426884 - 53426780
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    ||||||||||| ||||||| |||||||||| |||| ||     ||||||||||| ||||| |||| || || |||||||||||||||||||| | |||||    
T  53426884 gaaatagatgtgaaaatcacttatttcaatgaaagaga-----aaaacgagttagaggggtgattttgcgtaaaaaattgaccctaaatcatccatcttt 53426790  T
Q  161 ggtgaatgaa 170  Q
    | || |||||    
T  53426789 gatggatgaa 53426780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 1220255 - 1220367
Alignment:
Q  74 aaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaag 171  Q
    ||||||| ||||||||| ||| |||||| |||||| ||||||| ||||| |||| ||  ||||||||||| |||||||||  |||||||| |   |||||    
T  1220255 aaaatcacttatttcaacaaaagggaaagagaaaaacgagttagaggggtgattttgaatcaaaaattgatcctaaatcacccctctttgataggtgaag 1220354  T
Q  172 gagaataaattag 184  Q
    ||||| |||||||    
T  1220355 gagaagaaattag 1220367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 32237969 - 32238069
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatagaa 105  Q
    ||||||| ||||||||||  | ||||||||||||  ||||||||||||        ||||||||| | ||||||| ||||||||||||||||||| ||||    
T  32237969 agacgacgaacaaaccaacatcgcacaaagatgacaaaatcacaaaataaaaaat-gaaatagatatgaaaatcacttatttcaataaagggaaagagaa 32238067  T
Q  106 aa 107  Q
    ||    
T  32238068 aa 32238069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 43242853 - 43242781
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaa 176  Q
    ||||||||||||| ||| |||| || |||||||| |||||||||||||  | | |||| ||||||||||||||    
T  43242853 aaaacgagttaaatgggtgattttgtgtcaaaaactgaccctaaatcacccttatttgatgaatgaaggagaa 43242781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 28995333 - 28995380
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa 107  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  28995333 cgaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaa 28995380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 14741353 - 14741431
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaat 138  Q
    ||||||||||| ||||||| |||||||||| ||||||||| || ||||||||||| || || |||| ||||| ||||||    
T  14741353 gaaatagatgtgaaaatcacttatttcaataaaagggaaagagaaaaacgagttagagaggtgattttgggttaaaaat 14741431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 1806532 - 1806604
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaa 176  Q
    ||||||| ||| ||||| ||||  || |||||||||||||||||| ||  ||||||||||| |||||| ||||    
T  1806532 aaaacgatttagaggggtgatttgggatcaaaaattgaccctaaaccacccctctttggtggatgaagaagaa 1806604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 45664284 - 45664224
Alignment:
Q  92 aaagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||| ||||||||||| ||||||| ||||| |||| |||||||||| |||| |||||||||    
T  45664284 aaagagaaatagaaaaacgagttagaggggtgattttgggtcaaaatttgatcctaaatca 45664224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 9675 - 9815
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| ||| ||||||||| ||||||||||||| ||||||| ||| | |||| |||||||||||||||||||||||||| |||||    
T  9675 cgaaatagatgtgaaaatcacttaattcaataaaagggaaatagaaaaacgagttagaggagtgattttgggtcaaaaattgaccctaaatcatccctct 9774  T
Q  159 ttggtgaatgaaggagaataaatta-ggttttggtgacggc 198  Q
    |||||| ||||||||||| ||| || |||||| ||||||||    
T  9775 ttggtggatgaaggagaagaaactagggtttttgtgacggc 9815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 33703536 - 33703671
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaacgagt-taaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||||||| | | |||| |||| ||||| ||||||||||| |||||||| |||||    
T  33703536 cgaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaacgagtgtgagggggtgattttgggtaaaaaattgaccataaatcatccctct 33703635  T
Q  159 ttggtgaatgaaggagaataaattaggttttggtga 194  Q
    || ||| ||||||||||| ||| |||||||||||||    
T  33703636 ttagtggatgaaggagaaaaaactaggttttggtga 33703671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 44514030 - 44514184
Alignment:
Q  75 aaatcatttatttcaataaa-gggaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaag 171  Q
    |||||| ||||||||||||| |||||||||||||  | |||||||| || |||| |||||||||||||||||||||||||  ||||||| ||| ||||||    
T  44514030 aaatcacttatttcaataaaagggaaatagaaaaaacaagttaaagaggtgattttgggtcaaaaattgaccctaaatcacccctctttagtggatgaag 44514129  T
Q  172 gagaataaatta-ggttttggtgacggcatacaagagagaaaaagggaaaagaga 225  Q
    | ||| |||||| ||||||||||||||| | ||||| ||| || |||||||||||    
T  44514130 gtgaagaaattagggttttggtgacggcttccaagaaagagaaggggaaaagaga 44514184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 22344885 - 22345092
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| || || ||      
T  22344885 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaagga 22344983  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatac 202  Q
    ||||| ||||| ||||| |||| ||||||||||||||| |||||||||  |||||||| || ||||||||||| ||| || |||||||||||||||  ||    
T  22344984 aaaacaagttagaggggtgattttgggtcaaaaattgaacctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctcac 22345083  T
Q  203 aagagagaa 211  Q
     ||||||||    
T  22345084 tagagagaa 22345092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 14717272 - 14717434
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| ||||||| ||||||||||||| |||||| |||||| ||||||| ||||   ||| |  ||||||||||||||||||||||  |||||||    
T  14717272 aaatagatgtgaaaatcacttatttcaataaaagggaaaaagaaaaacgagttagagggtgaatt-taagtcaaaaattgaccctaaatcacccctcttt 14717370  T
Q  161 ggtgaatgaaggagaataaattag-gttttggtgacggcatacaagagagaaaaagggaaaagaga 225  Q
    |||| ||||||||||| ||| ||| ||||||||||||||  |||||||||  ||||||||||||||    
T  14717371 ggtggatgaaggagaagaaactagagttttggtgacggctcacaagagag--aaagggaaaagaga 14717434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 44562722 - 44562868
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| ||||||| |||||||||||||       || || |||||| ||||||| ||||||||||||| ||||||||||    
T  44562722 agacgacgaacaaaccaacgtcgcacgaagatgacgaaatcacaaaatataaaa-cgtaacagatgtgaaaatcacttatttcaataaaagggaaataga 44562820  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    ||| ||||||| ||||| |||| |||||||||||||||||||||||||    
T  44562821 aaaacgagttagaggggtgattttgggtcaaaaattgaccctaaatca 44562868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 5832373 - 5832228
Alignment:
Q  8 acgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaa 106  Q
    ||||| |||||||||| || |||  |||| || |||||||||||||       |||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  5832373 acgacgaacaaaccaacgtcgcaagaagacgacgaaatcacaaaataaaaaaacgaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaa 5832274  T
Q  107 a-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    | ||||||| ||||| ||||  ||||||||||||||||||||||||    
T  5832273 aacgagttagaggggtgatttagggtcaaaaattgaccctaaatca 5832228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 630757 - 630904
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||  |||| || |||||||||||||       |||||||||||| ||||||| ||||||||||||| ||||||||||    
T  630757 agacgacgaacaaaccaacgtcgcaagaagacgacgaaatcacaaaataaaaaaacgaaatagatgtgaaaatcacttatttcaataaaagggaaataga 630856  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    ||| ||||||| | ||| ||||  ||||||||||||||||||||||||    
T  630857 aaaacgagttagatgggtgatttagggtcaaaaattgaccctaaatca 630904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 30853811 - 30853964
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaac-gagttaaaggggc-gattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    |||||||||| |||||||||||||||||| ||||||||| ||||||  || |||  ||||  |||| ||||||||||||||||| | ||||| |||||||    
T  30853811 aaatagatgtgaaaatcatttatttcaatgaaagggaaagagaaaaatgacttagtgggggtgattttgggtcaaaaattgaccttgaatcacacctctt 30853910  T
Q  160 tggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
    ||||| ||||||||||| ||| || ||||||||||| |||  | ||||||||||    
T  30853911 tggtggatgaaggagaagaaactagggttttggtgatggctcaaaagagagaaa 30853964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 37685122 - 37685275
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaag---ggaaatagaaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    ||||| || ||| ||||||| |||||||||||||    ||||||||||||||||||| |||   |||| |||||||||||||||| || |||| | ||||    
T  37685122 cgaaacaggtgtgaaaatcacttatttcaataaaaaaaggaaatagaaaacgagttagaggattgattttgggtcaaaaattgactctcaatcgttcctc 37685221  T
Q  158 tttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaagagagaa 211  Q
    ||||||| |||||||| || ||| |||| |||| ||||||||  |||||||||||    
T  37685222 tttggtggatgaagga-aagaaactaggatttttgtgacggctcacaagagagaa 37685275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 37700396 - 37700243
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaag---ggaaatagaaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    ||||| || ||| ||||||| |||||||||||||    ||||||||||||||||||| |||   |||| |||||||||||||||| || |||| | ||||    
T  37700396 cgaaacaggtgtgaaaatcacttatttcaataaaaaaaggaaatagaaaacgagttagaggattgattttgggtcaaaaattgactctcaatcgttcctc 37700297  T
Q  158 tttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaagagagaa 211  Q
    ||||||| |||||||| || ||| |||| |||| ||||||||  |||||||||||    
T  37700296 tttggtggatgaagga-aagaaactaggatttttgtgacggctcacaagagagaa 37700243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 38646670 - 38646546
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaagggaaat-agaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    ||||||||||| ||||||| ||||||||||||| | |||  |||||| ||||||| | ||| |||| ||||||||||||||||| |||||||  ||||||    
T  38646670 gaaatagatgttaaaatcacttatttcaataaaagaaaaagagaaaaacgagttacatgggtgattttgggtcaaaaattgaccataaatcactcctctt 38646571  T
Q  160 tggtgaatgaaggagaataaattag 184  Q
    || |  ||||||||||| |||||||    
T  38646570 tgatagatgaaggagaaaaaattag 38646546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 6212917 - 6213039
Alignment:
Q  65 atagatgtaaaaatcatttatttcaataaagggaaatag--aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttgg 162  Q
    |||||||| ||||||| ||||||||||||| || || ||  ||||||||||| ||| | |||| ||||||||||||||||| |||||||  ||||||||     
T  6212917 atagatgtgaaaatcacttatttcaataaaagggaaaaggaaaaacgagttagaggtgtgattttgggtcaaaaattgaccataaatcacccctctttga 6213016  T
Q  163 tgaatgaaggagaataaattagg 185  Q
    || | ||||||||| ||| ||||    
T  6213017 tggacgaaggagaagaaactagg 6213039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 22032123 - 22032229
Alignment:
Q  67 agatgtaaaaatcatttatttcaataaagggaaat-agaaaacgagttaaaggggcgattat-gggtcaaaaattgaccctaaatcatacctctttggtg 164  Q
    |||||| |||| || ||||||||||||| |||||  ||||||| | ||| ||||| |||| | ||||||||||||||||||||||||| |||||||||||    
T  22032123 agatgtgaaaaacacttatttcaataaaaggaaaagagaaaacaatttagaggggtgatttttgggtcaaaaattgaccctaaatcatccctctttggtg 22032222  T
Q  165 aatgaag 171  Q
     ||||||    
T  22032223 gatgaag 22032229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 8893380 - 8893294
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccct 145  Q
    |||||||||||| ||||||| |||||||||| ||||||||| || ||||||||||| | ||| |||| ||||||||||||| |||||    
T  8893380 cgaaatagatgtgaaaatcacttatttcaataaaagggaaagagaaaaacgagttagaagggtgattttgggtcaaaaattaaccct 8893294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 21326554 - 21326468
Alignment:
Q  67 agatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||| ||||||| ||||||||||||| ||||||||||||| ||||||| ||||| |||| | | ||||||||||| |||||||||    
T  21326554 agatgtgaaaatcacttatttcaataaaagggaaatagaaaaacgagttagaggggtgatttttgttcaaaaattgatcctaaatca 21326468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 26199677 - 26199567
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaagggaaatagaaaacgagttaaaggggcgattatgggtcaa----aaattgaccctaaatcatacctct 158  Q
    |||||||||| ||||||| ||||||||||||||||||||||||      ||||||||| |||| ||||||||    ||||||||||| | |||  |||||    
T  26199677 aaatagatgtgaaaatcacttatttcaataaagggaaatagaa------ttaaaggggtgattttgggtcaaaattaaattgaccct-attcacccctct 26199585  T
Q  159 ttggtgaatgaaggagaa 176  Q
    |||||| |||||||||||    
T  26199584 ttggtggatgaaggagaa 26199567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 46589256 - 46589109
Alignment:
Q  66 tagatgtaaaaatcatttatttcaataaagg-gaaatagaaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggt- 163  Q
    ||||||| ||||||| |||||| |||||| | |||||| ||||||||||| ||||  |||| || |||||||||||| | |||||||  ||||||||||     
T  46589256 tagatgtgaaaatcacttattttaataaaagagaaatataaaacgagttagagggt-gattttgagtcaaaaattgatcataaatcacccctctttggtg 46589158  T
Q  164 -gaatgaaggagaa-taaattagg-ttttggtgacggcatacaagagag 209  Q
     | |||||||||||  |||||||| |||||||||||||  |||||||||    
T  46589157 gggatgaaggagaagaaaattaggtttttggtgacggctcacaagagag 46589109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 15276558 - 15276625
Alignment:
Q  159 ttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaaaagggaaaagaga 225  Q
    |||||| ||||||||||||||| || |||||||||||||||  |||| ||||| ||||||||||||||    
T  15276558 ttggtggatgaaggagaataaactatggttttggtgacggctcacaaaagagagaaagggaaaagaga 15276625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 45659128 - 45659041
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaa 147  Q
    ||||||||||| ||||||| |||||||||| ||||| ||| || ||||||||||| ||  | |||| |||||||||||||||||||||    
T  45659128 gaaatagatgtgaaaatcacttatttcaataaaaggtaaagagaaaaacgagttagagcagtgattttgggtcaaaaattgaccctaa 45659041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 17579842 - 17579744
Alignment:
Q  74 aaaatcatttatttcaat-aaagggaaatagaaaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaa 170  Q
    ||||||| |||||||||| ||||||||| ||||||  |||||| ||||  |||| ||| ||||||||||||||||| |||  |||||||| ||||||||    
T  17579842 aaaatcacttatttcaattaaagggaaagagaaaaatgagttagagggatgattttggttcaaaaattgaccctaagtcacccctctttgatgaatgaa 17579744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 23320521 - 23320448
Alignment:
Q  67 agatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaat 138  Q
    |||||| ||||| | ||||||||||||| ||||||||||||| ||||||| ||||| |||| ||||||||||||    
T  23320521 agatgtgaaaatgacttatttcaataaaagggaaatagaaaaacgagttagaggggtgattttgggtcaaaaat 23320448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 35077917 - 35078033
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||||||||| |||  |||| || ||||||||||| || || |||| |||||||||| |||| | ||||||||  ||||    
T  35077917 cgaaatagatgtgaaaatcacttatttcaataaaaatgaaagagaaaaacgagttagagaggtgattttgggtcaaaatttgatcataaatcatctctct 35078016  T
Q  159 ttggtgaatgaaggagaa 176  Q
    || |||||||| ||||||    
T  35078017 tt-gtgaatgagggagaa 35078033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 52839465 - 52839409
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    ||||||||||| | ||| |||| |||||||||||||||||||||||||  |||||||    
T  52839465 aaaacgagttagaagggtgattttgggtcaaaaattgaccctaaatcacccctcttt 52839409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 1768053 - 1768006
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa 107  Q
    |||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  1768053 cgaaatagatgtgaaaatcatttatttcaataaaagggaaagagaaaa 1768006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 900244 - 900134
Alignment:
Q  25 gttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaat--aaagggaaatagaaaacgagttaaaggggcg 122  Q
    |||||||||||| || |||||||||||||       |||||||||||| ||||||| ||||||||||  ||||||||| | |||| |||||| ||||| |    
T  900244 gttgcacaaagacgacgaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttatttcaataaaaagggaaagaaaaaatgagttacaggggtg 900146  T
Q  123 attatgggtcaa 134  Q
    |||  |||||||    
T  900145 atttagggtcaa 900134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 49651922 - 49651840
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattga 141  Q
    |||||||||||| ||| |||||||||||||| ||| |||||||| ||||||||||| | | | |||| ||| |||||||||||    
T  49651922 cgaaatagatgtgaaattcatttatttcaataaaaaggaaatagaaaaacgagttagatgtgtgattttggatcaaaaattga 49651840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 13691830 - 13691874
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaa 148  Q
    ||||||| ||| ||||| |||| ||||||||||||||||||||||    
T  13691830 aaaacgatttagaggggtgattttgggtcaaaaattgaccctaaa 13691874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 9661994 - 9661787
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| |||||| |||    
T  9661994 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaaaga 9661896  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatac 202  Q
    ||| | ||||| ||||| |||| |||||||||||||||||||||||||  |||||||| || ||||||||||| ||| || |||||||||||||||  ||    
T  9661895 aaaacaagttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctcac 9661796  T
Q  203 aagagagaa 211  Q
     ||||||||    
T  9661795 tagagagaa 9661787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 198
Target Start/End: Complemental strand, 16991958 - 16991819
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||| | ||| |||| |||||||||||||||||||||||||   |||||    
T  16991958 gaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaaacgagttagatgggtgattttgggtcaaaaattgaccctaaatcaccgctctt 16991859  T
Q  160 tggtgaatgaaggagaataaatta-ggttttggtgacggc 198  Q
    || || ||||||||||| ||| || ||||||||| |||||    
T  16991858 tgatggatgaaggagaagaaactagggttttggtaacggc 16991819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 28588648 - 28588495
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaa--gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||||||  |||||||||||||||||||||  |||||| |||||| ||||||| ||||| |||| |||||||||||||||||||||||||  | |||    
T  28588648 gaaatagatgcgaaaatcatttatttcaataaaaagggaaagagaaaaacgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccttct 28588549  T
Q  159 ttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaagagagaa 211  Q
     || || ||||||||||| ||| |||| |||||||||||||  |||| ||||||    
T  28588548 atgatggatgaaggagaagaaactaggattttggtgacggctcacaaaagagaa 28588495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 43156858 - 43156713
Alignment:
Q  66 tagatgtaaaaatcatttatttcaataaag-ggaaatagaaaacgagttaaaggggcgattatgggtcaaaaattgaccc-taaatcatacctctttggt 163  Q
    ||||||| ||||||| |||||||||||||  ||||||| |||||| |||| ||||| |||| |||||||||||||||||| |||||||  ||||||||||    
T  43156858 tagatgtgaaaatcacttatttcaataaaaaggaaatataaaacgtgttagaggggtgattttgggtcaaaaattgacccgtaaatcacccctctttggt 43156759  T
Q  164 gaatgaaggagaa-taaattaggttttggtgacggcatacaagaga 208  Q
    | |||||||||||  ||| || ||||||||||||||  ||||||||    
T  43156758 ggatgaaggagaagaaaactaagttttggtgacggctcacaagaga 43156713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 4634368 - 4634230
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaagggaaatag--aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| ||||||| ||||||||||||| || || ||  ||||| ||||| ||||| |||| ||||||||||||||||| |||||||  |||||||    
T  4634368 aaatagatgtgaaaatcacttatttcaataaaagggaaaaggaaaaacaagttagaggggtgattttgggtcaaaaattgaccttaaatcacccctcttt 4634269  T
Q  161 ggtgaatgaaggagaataaatta-ggttttggtgacggc 198  Q
    | || ||||||||||| ||| || |||||||||||||||    
T  4634268 gatggatgaaggagaagaaactagggttttggtgacggc 4634230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 1645981 - 1646122
Alignment:
Q  74 aaaatcatttatttcaataaagg-gaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaag 171  Q
    ||||||||||||||||||||| | |||| |||||| ||||||| ||||| |||| |||||||| |||| ||||||||||||  |||||||||||||||||    
T  1645981 aaaatcatttatttcaataaaagagaaagagaaaaacgagttagaggggtgattttgggtcaacaattaaccctaaatcatctctctttggtgaatgaag 1646080  T
Q  172 gagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
     |||| ||| || |||||| ||||||||  | ||||||||||    
T  1646081 aagaagaaactagggttttagtgacggctcaaaagagagaaa 1646122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 54420740 - 54420865
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaa-tagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| ||| ||||||||||||| ||||| ||||||| ||||||| ||| | |||| |||||||||||||||||||||||||  | |||    
T  54420740 cgaaatagatgtgaaa-tcacttatttcaataaaaggaaaatagaaaaacgagttagaggagtgattttgggtcaaaaattgaccctaaatcacccatct 54420838  T
Q  159 ttggtgaatgaaggagaataaattagg 185  Q
    |||||| ||||||||||| ||| ||||    
T  54420839 ttggtggatgaaggagaagaaactagg 54420865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 23067821 - 23067967
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       || || |||||| ||||||| ||||||||||||| ||||||||||    
T  23067821 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-cgtaacagatgtgaaaatcacttatttcaataaaagggaaataga 23067919  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    ||| ||||||| ||||| ||||  ||||||||||||||||||||||||    
T  23067920 aaaacgagttagaggggtgatttagggtcaaaaattgaccctaaatca 23067967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 37869446 - 37869608
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaat-aaagggaaata-gaaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| ||||||| |||||||||| ||||||||| |  ||||||||||| ||||  |||| | ||| || |||||||||||||||| | ||||||    
T  37869446 aaatagatgtgaaaatcacttatttcaataaaagggaaagataaaaacgagttagagggatgatt-ttggtaaacaattgaccctaaatcacatctcttt 37869544  T
Q  161 ggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaaaagggaaaagaga 225  Q
      || ||||||||||| ||| || |||||||||||||||  |||||||||  ||||||||||||||    
T  37869545 aatggatgaaggagaagaaactagggttttggtgacggctcacaagagag--aaagggaaaagaga 37869608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 212
Target Start/End: Complemental strand, 3169114 - 3168973
Alignment:
Q  74 aaaatcatttatttcaataaagg-gaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaag 171  Q
    ||||||||||||||||||||| | |||| | |||| ||||||| ||||| |||| |||||||| ||||||| ||||||||   |||||||||||||||||    
T  3169114 aaaatcatttatttcaataaaagagaaagaaaaaaacgagttagaggggtgattttgggtcaataattgactctaaatcacctctctttggtgaatgaag 3169015  T
Q  172 gagaataaattag-gttttggtgacggcatacaagagagaaa 212  Q
     |||| ||| ||| ||||| || ||||| || ||||||||||    
T  3169014 aagaaaaaactagagttttagtcacggcttaaaagagagaaa 3168973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 14542485 - 14542656
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| |||||||||||||  | || ||      
T  14542485 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaaaggaaaagga 14542583  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaa 176  Q
    ||||| ||||| || |  |||| |||||||||||||||||||||||||  |||||||| || |||||||||||    
T  14542584 aaaacaagttagagagatgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaa 14542656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 34115632 - 34115796
Alignment:
Q  14 aacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgag 111  Q
    |||| ||||| || |||| |||| || |||||||||||||       |||||||||| ||||||||| || |||||||||| |||||| |||||| |||     
T  34115632 aacataccaacgtcgcacgaagacgacgaaatcacaaaataaaaaaacgaaatagatataaaaatcacttctttcaataaaagggaaagagaaaaacgaa 34115731  T
Q  112 ttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaa 176  Q
     || ||||| |||| ||||||||||||||||||||||| ||  |||||||||  ||||| |||||    
T  34115732 ctagaggggtgattttgggtcaaaaattgaccctaaattatctctctttggtagatgaatgagaa 34115796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 41486716 - 41486572
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaata-aagggaaataga 104  Q
    ||||||| ||||||||||  | ||||||||| ||  ||||||||||||       |||||||||||| ||||||  ||||||||||| |||||||| |||    
T  41486716 agacgacgaacaaaccaacatcgcacaaagacgacaaaatcacaaaataaaaaa-cgaaatagatgtgaaaatctcttatttcaatataagggaaagaga 41486618  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaat 149  Q
    ||| ||||||| ||||| |||| ||| |||||||||||||||||||    
T  41486617 aaaacgagttagaggggtgattttggatcaaaaattgaccctaaat 41486572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 51646180 - 51646054
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| ||||||||||||| |||||||| |||| ||| ||| ||||| |||| | ||| ||||||||||| ||||||||  ||||    
T  51646180 cgaaatagatgtgaaaatcacttatttcaataaaagggaaataaaaaaacgaattagaggggtgattttaggttaaaaattgaccataaatcatctctct 51646081  T
Q  159 ttggtgaatgaaggagaataaattagg 185  Q
    ||| || ||||||| ||| ||| ||||    
T  51646080 ttgatggatgaaggtgaagaaagtagg 51646054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 46728947 - 46729086
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||||| ||  |||||| ||||||||||||| ||||||||||||| | | ||| ||||  |||| |||||||||||||||||||||||||  |||||    
T  46728947 cgaaatagacgtgtaaatcacttatttcaataaaagggaaatagaaaaacaaattagagggt-gattttgggtcaaaaattgaccctaaatcacccctct 46729045  T
Q  159 ttggtgaatgaaggagaataaattag-gttttggtgacggc 198  Q
    |||||| ||||| | ||| ||| ||| |||||| |||||||    
T  46729046 ttggtggatgaaagtgaaaaaactagagttttgatgacggc 46729086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 6408520 - 6408409
Alignment:
Q  68 gatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca-tacctctttggtg 164  Q
    ||||| ||||||| ||||||||| ||| |||||||| |||| |||||||||| || |||| ||||| ||||||||||||| |||||   |||||||||||    
T  6408520 gatgtgaaaatcaattatttcaacaaaagggaaatataaaaacgagttaaagaggtgattttgggtaaaaaattgacccttaatcacctcctctttggtg 6408421  T
Q  165 aatgaaggagaa 176  Q
     |||||||||||    
T  6408420 gatgaaggagaa 6408409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 38170132 - 38170239
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaat-aaagggaaataga 104  Q
    |||||||||||||| |||| |||||| |||| ||||||||||| ||||       ||||||| |||| ||||||| |||||||||| ||||||||| |||    
T  38170132 agacgacaaacaaaacaatattgcactaagacgatgaaatcacgaaataaaaaa-cgaaataaatgtgaaaatcacttatttcaatgaaagggaaaaaga 38170230  T
Q  105 aaacgagtt 113  Q
    |||||||||    
T  38170231 aaacgagtt 38170239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 31601331 - 31601441
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag- 103  Q
    ||||||| |||||||||| || |||  |||| || |||||||||||||       |||||||||||| ||||||| |||||||||| ||||||||||||     
T  31601331 agacgacgaacaaaccaacgtcgcaagaagacgacgaaatcacaaaataaaaaaacgaaatagatgtgaaaatcacttatttcaataaaagggaaatagc 31601430  T
Q  104 aaaacgagtta 114  Q
    |||||||||||    
T  31601431 aaaacgagtta 31601441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 1657654 - 1657750
Alignment:
Q  116 aggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaa 211  Q
    ||||| |||| |||||||||||||||||||||||||   ||||||| || ||||||||||| ||| || |||||| |||||| |  |||||||||||    
T  1657654 aggggtgattttgggtcaaaaattgaccctaaatcacctctctttgatggatgaaggagaagaaactagggttttagtgacgtctcacaagagagaa 1657750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 29577157 - 29577265
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg-ttttggtgacggcatac 202  Q
    |||||||| || |||||  ||| || |||||||| |||||||||||||  ||| |||  || |||||||| ||||||||||| |||||||||||||  ||    
T  29577157 aaaacgagatagaggggatattttgagtcaaaaagtgaccctaaatcaccccttttttatggatgaaggaaaataaattaggattttggtgacggctcac 29577256  T
Q  203 aagagagaa 211  Q
    |||||||||    
T  29577257 aagagagaa 29577265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 30416650 - 30416761
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaat-aaagggaaatag--aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    |||||||||| ||||||| |||||||||| ||||||||||||  ||||| ||||| ||| | |||| ||| ||||||||||||| ||||| |  ||| ||    
T  30416650 aaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaaaacaagttagaggtgtgattttggttcaaaaattgaccataaattacccctttt 30416749  T
Q  160 tggtgaatgaag 171  Q
    ||||| ||||||    
T  30416750 tggtggatgaag 30416761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 35338481 - 35338356
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaata-aagggaaatagaa-aacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||| | ||||| |||| ||||||||| | |||||||| |||| || |||||| || || ||||  ||||||||| ||||||||||||||| | |||    
T  35338481 cgaaatacaagtaaacatcacttatttcaacataagggaaagagaagaatgagttacagaggtgatttagggtcaaaatttgaccctaaatcat-catct 35338383  T
Q  159 ttggtgaatgaaggagaataaattagg 185  Q
    |||||  ||||||||||| ||||||||    
T  35338382 ttggtagatgaaggagaaaaaattagg 35338356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 52555754 - 52555840
Alignment:
Q  67 agatgtaaaaatcatttatttcaataaaggg-aaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||| ||||||| ||||||||||||| |  |||||||||| ||||||| || || |||| |||||||||||||| ||||||||||    
T  52555754 agatgtgaaaatcacttatttcaataaaagataaatagaaaaacgagttagagaggtgattttgggtcaaaaattgtccctaaatca 52555840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 3673665 - 3673584
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg 185  Q
    ||||||| ||| ||||| ||||  ||||||||||||||||||||||||  ||||||||||| || || ||||| ||| ||||    
T  3673665 aaaacgatttagaggggtgatttggggtcaaaaattgaccctaaatcacccctctttggtggataaatgagaagaaagtagg 3673584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 20961578 - 20961491
Alignment:
Q  18 aaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa 107  Q
    |||||| || |||| |||| ||||||||||||||||       |||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  20961578 aaccaacgtcgcacgaagacgatgaaatcacaaaataaaa---cgaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaa 20961491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 26576531 - 26576611
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaata-gaaaacgagttaaaggggcgattatgggtcaaaaattg 140  Q
    |||||||||||| || ||||||||||| ||||||||||||||  ||||| | ||| ||| | |||| ||||||||||||||    
T  26576531 cgaaatagatgtgaatatcatttatttgaataaagggaaatataaaaacaaattagaggtgtgattttgggtcaaaaattg 26576611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 40859733 - 40859686
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa 107  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  40859733 cgaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaa 40859686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 9474623 - 9474689
Alignment:
Q  146 aaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaa 211  Q
    ||||||| ||||||||||  ||||||||||| ||| || |||||||||||||||  |||||||||||    
T  9474623 aaatcatccctctttggttgatgaaggagaagaaactagggttttggtgacggctcacaagagagaa 9474689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 4622682 - 4622885
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataa--agggaaatag 103  Q
    ||||||||||||  || | || |||| |||| || |||||||||||||       ||||||| ||||  |||||| |||||| |||||  | ||||| ||    
T  4622682 agacgacaaacactcccacgtcgcactaagacgacgaaatcacaaaataaaagaacgaaataaatgtggaaatcacttattttaataagaaaggaaagag 4622781  T
Q  104 aaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattag-gttttggtgacggcata 201  Q
    |||| |||| || || || |||| ||| ||||||||||||| |||||||  |||||||  || |||||| |||| ||| ||| |||||||||||| ||||    
T  4622782 aaaaacgagatacagaggtgattttggatcaaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaactagagttttggtgacgacata 4622880  T
Q  202 caaga 206  Q
    |||||    
T  4622881 caaga 4622885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 4959622 - 4959694
Alignment:
Q  80 atttatttcaataaagggaaatagaaaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    ||||||||||||||| ||||| ||||||  |||||| || |  |||| ||| |||||||||||||||||||||    
T  4959622 atttatttcaataaacggaaagagaaaaatgagttagagtgatgattttggatcaaaaattgaccctaaatca 4959694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 42972117 - 42972033
Alignment:
Q  69 atgtaaaaatcatttatttcaataaagggaaa-tagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||| ||||||| ||||||||||||| | ||| ||||||| | ||||| | | | |||| |||||||||||||||||||||||||    
T  42972117 atgtgaaaatcacttatttcaataaaagcaaaatagaaaaacaagttagatgagtgattttgggtcaaaaattgaccctaaatca 42972033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 16913415 - 16913249
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||||||||| |||| ||||  ||||| ||||||| ||||| ||||  ||||||||||||||||||||||||  |||||    
T  16913415 cgaaatagatgtgaaaatcacttatttcaatgaaagtgaaagtgaaaaacgagttagaggggtgatttcgggtcaaaaattgaccctaaatcacccctct 16913316  T
Q  159 ttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaaaagggaaaagaga 225  Q
    |||||| ||||||||||| ||| || |||||||||||||||  |||| ||||| ||| ||||||||||    
T  16913315 ttggtggatgaaggagaagaaactagggttttggtgacggctcacaaaagagataaa-ggaaaagaga 16913249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 20845149 - 20844929
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| ||||||||||||| |||| |||||||  ||||||||||||       |||||||||||| ||||||| ||||||||||||| |||||| |||    
T  20845149 agacgacgaacaaaccaatgtcgcacgaagatgacaaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttatttcaataaaagggaaagaga 20845051  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca-tacctctttggtgaatgaaggagaataaa-ttaggttttggtgacggcata 201  Q
    ||| ||||||| ||||| |||| ||||||||||||||||| | ||| |   ||||||||||  || |||||||| ||| | ||||||||||||||||  |    
T  20845050 aaaacgagttagaggggtgattttgggtcaaaaattgaccttgaattaccccctctttggtagataaaggagaagaaactaaggttttggtgacggctca 20844951  T
Q  202 caagagagaaaaagggaaaagaga 225  Q
    ||||||||  ||||||||||||||    
T  20844950 caagagag--aaagggaaaagaga 20844929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 548839 - 549057
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| ||||||||||  |||||| |||| ||||||||||||||||       | |||||||||| ||||||  ||||||||||||| |||||| |||    
T  548839 agacgacgaacaaaccaacattgcacgaagacgatgaaatcacaaaataaaaa--caaaatagatgtgaaaatcgcttatttcaataaaagggaaaaaga 548936  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg-ttttggtgacggcatac 202  Q
    ||| ||||||| ||||| |||| ||||||||||||||||| || ||||  ||||  | ||| ||||||||||| |||||||| ||||| |||||||  ||    
T  548937 aaaacgagttagaggggtgattttgggtcaaaaattgaccttatatcactcctc--tagtggatgaaggagaaaaaattaggattttgatgacggctcac 549034  T
Q  203 aagagagaaaaagggaaaagaga 225  Q
    |||| ||| ||||||||||||||    
T  549035 aagaaagagaaagggaaaagaga 549057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 12576505 - 12576619
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||||| | ||||| ||||| ||||  ||||||||||||||||||||||||  |||||    
T  12576505 cgaaatagatgtgaaaatcacttatttcaattaaagggaaatagaaaaacaagttagaggggtgatttagggtcaaaaattgaccctaaatcacccctct 12576604  T
Q  159 ttggtgaatgaagga 173  Q
    || ||| ||||||||    
T  12576605 ttcgtggatgaagga 12576619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 212
Target Start/End: Complemental strand, 7049331 - 7049180
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||| | ||||||| ||||||||||||| |||||| ||||||  ||| | | |||| |||| || ||||||| ||||||||||||||  |||||||    
T  7049331 aaatagatatgaaaatcacttatttcaataaaagggaaagagaaaaatgagctga-ggggtgattttgagtcaaaagttgaccctaaatcacccctcttt 7049233  T
Q  161 ggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
    |||| ||||||||||| |||||| |||||||||||||||  ||||||||||||    
T  7049232 ggtggatgaaggagaaaaaattatggttttggtgacggctcacaagagagaaa 7049180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 19759867 - 19759783
Alignment:
Q  69 atgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||| ||||||| ||||||||||||| ||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||    
T  19759867 atgtgaaaatcacttatttcaataaaagggaaatagaaaaacgagttagaggggtgattttgggtcaaaaattgaccctaaatca 19759783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 4663847 - 4663973
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagg-gaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||| ||| ||||||| |||||| |||||| | |||| | |||| || |||| ||||| |||| ||||||||||||||||||  |||||  |||||    
T  4663847 cgaaatagttgtgaaaatcacttattttaataaaagagaaacataaaaacgtgttagaggggtgattttgggtcaaaaattgacccacaatcacccctct 4663946  T
Q  159 ttggtgaatgaaggagaataaattagg 185  Q
    |||||| ||||||||||| ||||||||    
T  4663947 ttggtggatgaaggagaagaaattagg 4663973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 15128189 - 15128344
Alignment:
Q  74 aaaatcatttatttcaata-aagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaag 171  Q
    ||||||| ||||||||||| |||||||| |||||| ||||||| ||||| |||| |||| |||||||||| ||||||||||   |||||| || ||||||    
T  15128189 aaaatcacttatttcaatacaagggaaagagaaaaacgagttagaggggtgattttgggacaaaaattga-cctaaatcatctatctttgatggatgaag 15128287  T
Q  172 gagaataaa-ttaggttttggtgacggcatac-aagagagaaaaagggaaaagagag 226  Q
     |||| ||| | || ||||||||||| | ||| |||||| | ||||| |||||||||    
T  15128288 tagaagaaactaagattttggtgacgacttacgaagagaaagaaaggtaaaagagag 15128344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 193
Target Start/End: Complemental strand, 32457732 - 32457598
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    |||||| |||| ||| ||| |||||||||| |||  |||| || ||||||||||| | ||| |||| |||||||||||||||| ||||||||  ||||||    
T  32457732 gaaatacatgtgaaagtcacttatttcaataaaaatgaaagagaaaaacgagttagatgggtgattttgggtcaaaaattgacgctaaatcacccctctt 32457633  T
Q  160 tggtgaatgaaggagaataaa-ttaggttttggtg 193  Q
    | ||  ||||||||||| ||| | |||||||||||    
T  32457632 tagtagatgaaggagaaaaaactaaggttttggtg 32457598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 33194690 - 33194600
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaag-ggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||||||| ||||| |||||||||||||||| ||||| || ||||||| ||| ||  | |||| ||| |||||||||||||||||||||    
T  33194690 aaatagatgtgaaaataatttatttcaataaagaggaaagagaaaaacgaattagagatgtgattttggatcaaaaattgaccctaaatca 33194600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 891675 - 891558
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||||| || |||||||||||||||||| ||| | ||| || ||||||||||| |||||  ||| |||||||||||| |||||| |||||   ||||    
T  891675 cgaaatagacgtgaaaatcatttatttcaataaaatgaaaacagaaaaacgagttataggggtaattttgggtcaaaaatcgacccttaatcacctctct 891576  T
Q  159 ttggtgaatgaaggagaa 176  Q
    ||  || |||||||||||    
T  891575 ttaatggatgaaggagaa 891558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 13234081 - 13234226
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| |||||| |||    
T  13234081 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaaaga 13234179  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    ||| ||| ||| | ||  |||| | |||||||||||||||||||||||    
T  13234180 aaaacgaattagaaggt-gattttaggtcaaaaattgaccctaaatca 13234226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 32804376 - 32804289
Alignment:
Q  67 agatgtaaaaatcatttatttcaataaa-gggaaatagaaaac--gagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||| ||||||| ||||||||||||| ||| || ||||||   |||||| | ||| |||| |||||||||||||||||||||||||    
T  32804376 agatgtgaaaatcacttatttcaataaaagggtaagagaaaaaatgagttagatgggtgattttgggtcaaaaattgaccctaaatca 32804289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 32574505 - 32574386
Alignment:
Q  95 gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg-ttttggt 192  Q
    |||||| |||||| ||||||| ||||   ||| |||||||||||||||| ||||| ||    | ||||||| ||||||||||| ||| |||| |||||||    
T  32574505 gggaaagagaaaagcgagttagagggttaattttgggtcaaaaattgactctaaaacacctatatttggtggatgaaggagaagaaaatagggttttggt 32574406  T
Q  193 gacggcatacaagagagaaa 212  Q
    ||||||  ||||||||||||    
T  32574405 gacggctcacaagagagaaa 32574386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 10744665 - 10744553
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaagggaaa-tagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    ||||||||||  ||| || |||||||||||||  |||| |||||||  | ||||| ||| | |||| |||||||||| ||||||||||||||  | ||||    
T  10744665 aaatagatgtgtaaaccacttatttcaataaaaagaaaatagaaaaaacaagttagaggagtgattttgggtcaaaagttgaccctaaatcacccatctt 10744566  T
Q  160 tggtgaatgaagg 172  Q
    ||||| |||||||    
T  10744565 tggtggatgaagg 10744553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 8644332 - 8644240
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||||||||| |||| || ||||||||||||| |||||| ||||||  || ||  || || |||| | |||||||||||||||||||||||    
T  8644332 cgaaatagatgtgaaaaacacttatttcaataaaagggaaagagaaaaatgaatttgagtggtgatttttggtcaaaaattgaccctaaatca 8644240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 32258001 - 32257902
Alignment:
Q  128 gggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaagagagaaaaagggaaaagagag 226  Q
    |||||||||||||||| || ||||| |||||||| || ||||| ||||| ||| |||| |||| |||||| |  |||||||||| || ||||| ||||||    
T  32258001 gggtcaaaaattgaccttacatcatccctctttgatggatgaa-gagaagaaactaggattttagtgacgactcacaagagagagaatgggaagagagag 32257903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 25771586 - 25771379
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| || || ||      
T  25771586 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaagga 25771488  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatac 202  Q
    ||||| ||||| ||||| |||| |||||||||||||||||||||||||  |||||||| || ||||||||||| ||| || |||||||||||||||  ||    
T  25771487 aaaacaagttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctcac 25771388  T
Q  203 aagagagaa 211  Q
     ||||||||    
T  25771387 tagagagaa 25771379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 27191363 - 27191493
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| ||| ||||||||||||| ||||||||||||| ||||||| ||||| ||||  ||||||||||||||||||||||||| |||||    
T  27191363 cgaaatagatgtgaaa-tcacttatttcaataaaagggaaatagaaaaacgagttagaggggtgatttagggtcaaaaattgaccctaaatcatccctct 27191461  T
Q  159 ttggtgaatgaaggagaataaattaggttttg 190  Q
    |||||| ||||||||||| ||| |||| ||||    
T  27191462 ttggtggatgaaggagaagaaactagggtttg 27191493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 27841177 - 27841307
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| ||| ||||||||||||| ||||||||||||| ||||||| ||||| ||||  ||||||||||||||||||||||||| |||||    
T  27841177 cgaaatagatgtgaaa-tcacttatttcaataaaagggaaatagaaaaacgagttagaggggtgatttagggtcaaaaattgaccctaaatcatccctct 27841275  T
Q  159 ttggtgaatgaaggagaataaattaggttttg 190  Q
    |||||| ||||||||||| ||| |||| ||||    
T  27841276 ttggtggatgaaggagaagaaactagggtttg 27841307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 42105781 - 42105932
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||||| ||||||| || || |||| |||||||||||||||||||||| ||  |||||||    
T  42105781 aaatagatgtgaaagtcacttatttcaataaaagggaaatagaaaaacgagttagagtggtgattttgggtcaaaaattgaccctaaagcacccctcttt 42105880  T
Q  161 ggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaa 211  Q
    |||| |||||||| ||||||||| |||||| ||||||||  || ||||||||    
T  42105881 ggtggatgaaggaaaataaattagggtttttgtgacggctaacgagagagaa 42105932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 3390573 - 3390379
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| || || ||      
T  3390573 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaagga 3390475  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggc 198  Q
    ||||| ||||| ||||| |||| |||||||||||||||||||||||||  |||||||| || ||||||||||| ||| || |||||||||||||||    
T  3390474 aaaacaagttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggc 3390379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 6089980 - 6089854
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||||| ||| ||| ||||| |||| ||||||||||||||||| |||||||  |||||    
T  6089980 cgaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaaacgaattagaggggtgattttgggtcaaaaattgaccttaaatcacccctct 6089881  T
Q  159 ttggtgaatgaaggagaataaattagg 185  Q
    ||| || ||||||||||| ||||||||    
T  6089880 ttgatggatgaaggagaagaaattagg 6089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 40125530 - 40125323
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagg-gaaataga 104  Q
    |||||| ||||||| ||| ||||||| |||||||  ||||||||||||       | |||||||||| |||||||  |||||||||||| | ||||||||    
T  40125530 agacgaaaaacaaaacaacgttgcactaagatgacaaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacgtatttcaataaaagagaaataga 40125432  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaa-ttaggttttggtgacggcatac 202  Q
    ||| | ||||| ||||| |||| ||||||||||||| |||||||||||  ||||||||||| ||||||||||| ||| | |||||||| |||||||  ||    
T  40125431 aaaacaagttagaggggtgattttgggtcaaaaattaaccctaaatcacccctctttggtggatgaaggagaagaaactaaggttttgatgacggctcac 40125332  T
Q  203 aagagagaa 211  Q
    |||||||||    
T  40125331 aagagagaa 40125323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 226
Target Start/End: Complemental strand, 5930510 - 5930342
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||||  |||||| |||||| |||||| ||||||| ||||  |||| ||||||||||||| |||||||||||   ||||    
T  5930510 cgaaatagatgtgaaaatcacttattgaaataaaagggaaacagaaaaacgagttagagggatgattttgggtcaaaaattaaccctaaatcacctctct 5930411  T
Q  159 ttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaagagagaaaaagggaaaagagag 226  Q
    |||||| ||||||||||| | |||||| ||||||||||| | | ||||||||  |||||||||||||||    
T  5930410 ttggtggatgaaggagaagatattaggattttggtgacgacttccaagagagcgaaagggaaaagagag 5930342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 25516580 - 25516427
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| ||| ||||||||||||| |||||||||||||  |||||| ||||| |||| ||||||||| |||||||||||||||  |||||    
T  25516580 cgaaatagatgtgaaa-tcacttatttcaataaaagggaaatagaaaaatgagttagaggggtgattttgggtcaaatattgaccctaaatcacccctct 25516482  T
Q  159 ttggtgaatgaaggagaataaattaggttttg-gtgacggcatacaagagagaaa 212  Q
    |||||| ||||||||||| ||| |||| |||| ||||||||  ||| ||||||||    
T  25516481 ttggtggatgaaggagaagaaactagggtttgtgtgacggctcacaggagagaaa 25516427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 37883740 - 37883587
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaag-ggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||||| ||||||  |||||||||||| ||| ||| ||||| |||| ||| | |||||||||||||||||||  |||||    
T  37883740 cgaaatagatgttaaaatcacttattttaataaaaaggaaatagaaaaacgaattagaggggtgattttggattaaaaattgaccctaaatcacccctct 37883641  T
Q  159 ttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaa 211  Q
    |||||| ||||||||||| |||||| | |||| ||||||||  |||||||||||    
T  37883640 ttggtggatgaaggagaagaaattatgattttagtgacggctcacaagagagaa 37883587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 27024112 - 27024304
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| ||||||||||||| |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| || || ||      
T  27024112 agacgacgaacaaaccaatgtcgcacgaagacgacgaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaagga 27024210  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattag-gttttggtgacg 196  Q
    ||||| ||||| ||||| |||| ||||||||||| |||||||||||||  | |||||| || ||||||||||| ||| ||| ||||||||||||    
T  27024211 aaaacaagttagaggggtgattttgggtcaaaaaatgaccctaaatcacccatctttgatggatgaaggagaagaaactagagttttggtgacg 27024304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 10589126 - 10588988
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||  | ||||| ||||| |||| |||||||||||||||||||||||||  |||     
T  10589126 cgaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaaaacaagttagaggggtgattttgggtcaaaaattgaccctaaatcacccctt 10589027  T
Q  158 tttggtgaatgaaggagaataaattagg-ttttggtgac 195  Q
    ||||||| ||||||  ||| ||| |||| ||||||||||    
T  10589026 tttggtggatgaagatgaagaaactaggattttggtgac 10588988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 3603126 - 3602907
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaat-aga 104  Q
    ||||||| |||||||||| || |||| |||| ||||||||||||||||       |||||||||| | ||||||| ||||||||| ||| |||||  |||    
T  3603126 agacgacgaacaaaccaacgtcgcacgaagacgatgaaatcacaaaataaaaaa-cgaaatagatatgaaaatcacttatttcaagaaaaggaaaagaga 3603028  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg-ttttggtgacggcatac 202  Q
    ||| | ||||| ||||| |||| || ||||||| |||||| |||||||  | |||||| || ||||||||||| ||| |||| |||||||||||||  ||    
T  3603027 aaaacaagttagaggggtgattttgagtcaaaagttgaccataaatcacccatctttgatggatgaaggagaagaaactaggattttggtgacggctcac 3602928  T
Q  203 aagagagaaaaagggaaaagaga 225  Q
    |||||||  ||||||||||||||    
T  3602927 aagagag--aaagggaaaagaga 3602907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 7640329 - 7640475
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       || || |||||| ||||||| ||||||||||||| ||||||||||    
T  7640329 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-cgtaacagatgtgaaaatcacttatttcaataaaagggaaataga 7640427  T
Q  105 aaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    ||| ||||||| ||||| |||| |||||||||||||||||||||||||    
T  7640428 aaaacgagttagaggggtgattttgggtcaaaaattgaccctaaatca 7640475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 41176952 - 41176795
Alignment:
Q  61 cgaaatagatgtaaaa--atcatttatttcaataaagg-gaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacc 155  Q
    |||||||||||| |||  |||| ||||||||||||| | |||||||||||  ||||||| | ||| | || |||||||||||||||||||||||||  ||    
T  41176952 cgaaatagatgtgaaatcatcacttatttcaataaaagagaaatagaaaaaacgagttagatgggtggttttgggtcaaaaattgaccctaaatcacccc 41176853  T
Q  156 tctttggtgaatgaaggagaataaattaggttttg-gtgacggcatacaagagagaaa 212  Q
    ||||||||| ||||||||||| ||| |||| |||| ||||||||  ||| ||||||||    
T  41176852 tctttggtggatgaaggagaagaaactagggtttgtgtgacggctcacaggagagaaa 41176795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 41842089 - 41841900
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    ||||||| |||||||||| || |||| |||| || ||||||||||||        |||||||||||| ||||||  ||||||||||||| |||||| |||    
T  41842089 agacgacgaacaaaccaacgtcgcactaagacgacgaaatcacaaaa---agaaacgaaatagatgtgaaaatcgcttatttcaataaaagggaaagaga 41841993  T
Q  105 aaa-cgagttaaaggggcgattat-gggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattag-gttttggtga 194  Q
    ||| ||||||||||||| |||| | |||||||||||||||| |||||||  ||||| || || ||||||||||| ||| ||| ||||||||||    
T  41841992 aaaacgagttaaaggggtgatttttgggtcaaaaattgaccataaatcaaccctctatgatggatgaaggagaaaaaactagagttttggtga 41841900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 3465031 - 3464921
Alignment:
Q  76 aatcatttatttcaataaagggaaa-tagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaagga 173  Q
    ||||| ||||||||||||| ||||| ||||||| |||||||  | || |||| ||| |||||||||||||||||||||  ||||||||||| ||||||||    
T  3465031 aatcacttatttcaataaaaggaaaatagaaaaacgagttagtgtggtgattttggatcaaaaattgaccctaaatcacccctctttggtggatgaagga 3464932  T
Q  174 gaataaattag 184  Q
    ||| |||||||    
T  3464931 gaagaaattag 3464921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 44167737 - 44167862
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| | | |||||||||| ||||| |||||||||| ||||||| ||||| |||| ||||||||||||||||| || ||||  |||||    
T  44167737 cgaaatagatgtgaaatt-acttatttcaattaaaggaaaatagaaaaacgagttagaggggtgattttgggtcaaaaattgaccatatatcacccctct 44167835  T
Q  159 ttggtgaatgaaggagaataaattagg 185  Q
    |||||| ||||||||||| ||| ||||    
T  44167836 ttggtggatgaaggagaagaaactagg 44167862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 198
Target Start/End: Original strand, 19581030 - 19581170
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||||| | ||||||| ||||||||||||| |||||||| ||||  ||||||| ||||| |||| || || |||||||||||| ||||||  |||||    
T  19581030 gaaatagatatgaaaatcacttatttcaataaaagggaaataaaaaaaacgagttagaggggtgattttgtgttaaaaattgacccaaaatcacccctct 19581129  T
Q  159 ttggtgaatgaaggagaataaa-ttaggttttggtgacggc 198  Q
    || ||| ||||||| ||| ||| | ||||||||||||||||    
T  19581130 ttagtggatgaaggtgaaaaaactaaggttttggtgacggc 19581170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 26491388 - 26491273
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    ||||||||||| ||| ||| ||||||||||||| |||||||||||||  |||||||||||| |||| ||||||||||||||| | ||||| |  ||||||    
T  26491388 gaaatagatgtgaaa-tcacttatttcaataaaagggaaatagaaaaatgagttaaaggggtgattttgggtcaaaaattgaacttaaattacccctctt 26491290  T
Q  160 tggtgaatgaaggagaa 176  Q
    ||||| |||| ||||||    
T  26491289 tggtggatgatggagaa 26491273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 43566961 - 43566810
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaag-ggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||| ||| |||||||||||||  |||||||||||| ||||||| ||||  |||| ||||||||||||||||||| |||||  |||||    
T  43566961 cgaaatagatgtgaaa-tcacttatttcaataaaaaggaaatagaaaaacgagttagagggt-gattttgggtcaaaaattgaccct-aatcacccctct 43566865  T
Q  159 ttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
    |||||| ||||||||||| ||| || |||||  ||||||||  ||| ||||||||    
T  43566864 ttggtggatgaaggagaagaaactatggtttgtgtgacggctcacaggagagaaa 43566810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 34480043 - 34479878
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||||||||| ||||||||| ||||||  | |||| | ||| |||| ||||| |||||||||||||| ||||| | |||    
T  34480043 cgaaatagatgtgaaaatcacttatttcaataaaagggaaagagaaaattgtgttataagggtgattttgggtaaaaaattgaccctatatcatccatct 34479944  T
Q  159 ttggtgaatgaaggagaataaattag-gttttggtgacggcatacaagagagaaaaagggaaaaga 223  Q
    ||| || ||||| ||||| ||| ||| |||||||||| |||   ||||||| | ||| ||||||||    
T  34479943 ttgatggatgaatgagaagaaactagagttttggtgatggctcgcaagagaaagaaaaggaaaaga 34479878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 25623074 - 25623225
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| ||||||| |||||||||| ||||||||| || ||||||||||| | ||| |||| |||||||||||||||   |||||||  |||||||    
T  25623074 aaatagatgtgaaaatcacttatttcaataaaagggaaagagaaaaacgagttatatgggtgattttgggtcaaaaattgataataaatcacccctcttt 25623173  T
Q  161 ggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaa 211  Q
    | || |||||| | || ||| || |||||||||| ||||  ||| |||||||    
T  25623174 gatgtatgaagaaaaagaaactagggttttggtggcggctcacaggagagaa 25623225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 29812642 - 29812755
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaaggg-aaatagaaaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||||||||  |||||| ||||||||||||| || ||| ||||||  |||||| ||||| |||| || ||||||||||||||||||||||   ||||    
T  29812642 cgaaatagatgtggaaatcacttatttcaataaaaggtaaagagaaaaatgagttagaggggtgattttgtgtcaaaaattgaccctaaatcacctctct 29812741  T
Q  159 ttggtgaatgaagg 172  Q
    ||| || |||||||    
T  29812742 ttgatggatgaagg 29812755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 9715521 - 9715664
Alignment:
Q  10 gacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag---aaa 106  Q
    |||||||||| ||| |||| || |||| || |||||||||||||       |||||||||||| ||||||| ||||||||||||| ||||| |    |||    
T  9715521 gacaaacaaatcaacgttgtactaagacgacgaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttatttcaataaaaggaaaaaagaaaaa 9715619  T
Q  107 acgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    |||||||  || |  |||| ||| |||||||||||||||||||||    
T  9715620 acgagttggagagatgattttggatcaaaaattgaccctaaatca 9715664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 29734277 - 29734194
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag--aaaacgagttaaaggggcgattatgggtcaaaaattga 141  Q
    |||||||| ||| ||||||| |||||||||| ||||||||||||  ||||||||||| ||| | |||| |||||||||| ||||    
T  29734277 cgaaataggtgtgaaaatcacttatttcaataaaagggaaatagaaaaaacgagttagaggagtgattttgggtcaaaatttga 29734194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 16879938 - 16880087
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatagaa 105  Q
    ||||||| |||||||||| || |||| |||| ||||||||||||| ||       | ||||| |||| ||||||| ||||||||||||| || |    ||    
T  16879938 agacgacgaacaaaccaacgtcgcacgaagacgatgaaatcacaagataaaaaa-caaaataaatgtgaaaatcacttatttcaataaaaggga----aa 16880032  T
Q  106 aacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    ||||||| | ||||| |||| |||||||||||||||||  ||||||  |||||||    
T  16880033 aacgagtgagaggggtgattttgggtcaaaaattgaccaaaaatcacccctcttt 16880087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 5071343 - 5071389
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaa 52  Q
    |||||||||||||| ||| ||||||| ||||||| ||||||||||||    
T  5071343 agacgacaaacaaaacaacgttgcactaagatgacgaaatcacaaaa 5071389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 13268660 - 13268560
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaa-taaagggaaatagaaaacgagtta-aaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||||||||  |||||| || ||||||||||||| | |||| |||| ||| ||||||| ||||| |||||||  |||||    
T  13268660 cgaaatagatgtgaaaatcacttatttcaacaaaagggcaagagaaaacgagttagagggggtgattttggttcaaaaa-tgaccataaatcacccctct 13268562  T
Q  159 tt 160  Q
    ||    
T  13268561 tt 13268560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 36507997 - 36507892
Alignment:
Q  82 ttatttcaataaagggaaa-tagaaaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataa 179  Q
    ||||||||||||| ||||| |||||||  |||| | || || |||| ||||||||||||||||||||| |||    ||||||||| ||||||||||| ||    
T  36507997 ttatttcaataaaaggaaaatagaaaaatgagtcagagaggtgattttgggtcaaaaattgaccctaagtcaccattctttggtggatgaaggagaagaa 36507898  T
Q  180 attagg 185  Q
    | ||||    
T  36507897 actagg 36507892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 44951512 - 44951463
Alignment:
Q  136 aattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg 185  Q
    ||||||||||||||||  ||||||||||| ||||||||||| ||| ||||    
T  44951512 aattgaccctaaatcacccctctttggtggatgaaggagaagaaactagg 44951463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 15674046 - 15674102
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    ||||| ||||| ||| | |||| |||||||||||||||||||||||||  |||||||    
T  15674046 aaaacaagttagaggagtgattttgggtcaaaaattgaccctaaatcacccctcttt 15674102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 24500530 - 24500442
Alignment:
Q  138 ttgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatacaagagagaaaaagggaaaagaga 225  Q
    ||||||||||||||  | ||||| ||| ||||||| ||| |||||| |||||||||||||||   ||||||||| || ||||| |||||    
T  24500530 ttgaccctaaatcacccatctttagtggatgaaggtgaagaaattaaggttttggtgacggctcccaagagagagaaggggaagagaga 24500442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 33486596 - 33486752
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    ||||||||||||  |||||| ||||||||||||| |||||||||||||  | ||||| | ||| |||| |||||||||||||||||||||||||  ||||    
T  33486596 cgaaatagatgtgtaaatcacttatttcaataaaagggaaatagaaaaaacaagttagatgggtgattttgggtcaaaaattgaccctaaatcacccctc 33486695  T
Q  158 tttggtgaatgaaggagaataaatt-aggttttggtgacggcatacaagagagaaaa 213  Q
    ||| ||| ||||||| ||| ||||| ||||||||||||||||   ||||||||||||    
T  33486696 tttagtggatgaaggtgaagaaattaaggttttggtgacggctcccaagagagaaaa 33486752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 6887207 - 6887345
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaagggaaatag--aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctcttt 160  Q
    |||||||||| ||||||| ||||||||||||| || || ||  ||||| ||||| ||||| |||| ||||| |||||||||||||||||||  |||||||    
T  6887207 aaatagatgtgaaaatcacttatttcaataaaagggaaaaggaaaaacaagttagaggggtgattttgggttaaaaattgaccctaaatcacccctcttt 6887306  T
Q  161 ggtgaatgaaggagaataaattag-gttttggtgacggc 198  Q
    | || ||||||||||| ||| ||| ||||||||||||||    
T  6887307 gatggatgaaggagaagaaactagagttttggtgacggc 6887345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 31645970 - 31645763
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatag-- 103  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       | |||||||||| ||||||| ||||||||||||| || || ||      
T  31645970 agacgacgaacaaaccaacgtcgcacgaagacgaagaaatcacaaaataaaaaa-caaaatagatgtgaaaatcacttatttcaataaaagggaaaagga 31645872  T
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaatta-ggttttggtgacggcatac 202  Q
    ||||| ||||| ||||| |||| ||| |||||||||||||||||||||  |||||||  || ||||||||||| ||| || |||||||||||||||  ||    
T  31645871 aaaacaagttagaggggtgattttggatcaaaaattgaccctaaatcacccctctttaatggatgaaggagaagaaactagggttttggtgacggctcac 31645772  T
Q  203 aagagagaa 211  Q
     ||||||||    
T  31645771 tagagagaa 31645763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 41554574 - 41554436
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    ||||||||||||  |||||| ||||||||||||| |||||||||||||  | ||||| ||||| |||| ||| ||||||||||| |||||||||  ||||    
T  41554574 cgaaatagatgtgtaaatcacttatttcaataaaagggaaatagaaaaaacaagttagaggggtgattttggatcaaaaattgatcctaaatcacccctc 41554475  T
Q  158 tttggtgaatgaaggagaataaattagg-ttttggtgac 195  Q
    |||| |||||||||| ||| |||||||| ||||||||||    
T  41554474 tttgatgaatgaaggtgaagaaattaggattttggtgac 41554436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 18472753 - 18472902
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaataaagggaaa-tagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    ||||||||||  |||||| ||||| ||||||| ||||| |||||||  | ||||| ||||| |||| ||||||||||||||||||||||||   ||||||    
T  18472753 aaatagatgtgtaaatcacttattgcaataaaaggaaaatagaaaaaacaagttagaggggtgattttgggtcaaaaattgaccctaaatc---cctctt 18472849  T
Q  160 tggtgaatgaaggagaataaattag-gttttggtgacggcatacaagagagaa 211  Q
    ||||| ||||||| ||| ||| ||| ||||||||||||||   ||||||||||    
T  18472850 tggtggatgaaggtgaagaaactagagttttggtgacggctcccaagagagaa 18472902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 41063423 - 41063576
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| |||||||||||||||||| ||| ||||| || ||||||||||| | | | |||| || ||||||||||||||||  ||||  |||||    
T  41063423 cgaaatagatgtgaaaatcatttatttcaataaaatggaaagagaaaaacgagttagatgagtgattttgagtcaaaaattgaccct-gatca-ccctct 41063520  T
Q  159 ttggtgaatgaaggagaataaattagg-ttttggtgacggcatacaagagagaaaa 213  Q
    ||| || ||||||||||| |||||||| |||||||||||||  |||||| ||||||    
T  41063521 ttgatggatgaaggagaagaaattaggattttggtgacggctgacaagatagaaaa 41063576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 28618677 - 28618565
Alignment:
Q  75 aaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaagg 172  Q
    |||||| ||||||||||||| ||||||||||||| ||||||| ||||| |||| ||||| ||||||||||| |||||||  |||||||||   |||||||    
T  28618677 aaatcacttatttcaataaaagggaaatagaaaaacgagttagaggggtgattttgggttaaaaattgaccttaaatcacccctctttggctgatgaagg 28618578  T
Q  173 agaataaattagg 185  Q
    |||| ||| ||||    
T  28618577 agaagaaactagg 28618565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 19646014 - 19646185
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaa-gggaaataga 104  Q
    |||||||||||||||  | |  ||||||||| ||| ||||||||||||       |||||||||||| ||||||| |||||||| |||| |||||| |||    
T  19646014 agacgacaaacaaactgacgccgcacaaagacgataaaatcacaaaataaaaaa-cgaaatagatgtgaaaatcacttatttcattaaaagggaaagaga 19646112  T
Q  105 aaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaa 176  Q
    |||  |||||| ||||| |||| ||||||||| ||||||| |||| ||  ||||||||||  |||||||||||    
T  19646113 aaaatgagttagaggggtgattttgggtcaaacattgaccttaaaccacccctctttggtcgatgaaggagaa 19646185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 212
Target Start/End: Complemental strand, 2415474 - 2415333
Alignment:
Q  74 aaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaag 171  Q
    ||||||| ||||||||||||| |||||| |||||| | ||||| | ||| |||| |||||||||||||||||||||||||    |||||| || ||||||    
T  2415474 aaaatcacttatttcaataaaagggaaaaagaaaaacaagttagaagggtgattttgggtcaaaaattgaccctaaatcacctatctttgatggatgaag 2415375  T
Q  172 gagaataaatta-ggttttggtgacggcatacaagagagaaa 212  Q
    || | |||| || ||||||| |||||||  ||||||||||||    
T  2415374 gaaattaaactagggttttgatgacggctcacaagagagaaa 2415333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 34893988 - 34894069
Alignment:
Q  104 aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattagg 185  Q
    ||||||||||| ||||| |||| ||||||||||||||||| |||||||  |||||||| || ||||||||||| ||| ||||    
T  34893988 aaaacgagttagaggggtgattttgggtcaaaaattgaccgtaaatcacccctctttgatggatgaaggagaagaaactagg 34894069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 4070641 - 4070530
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    ||||||| |||| ||||||| |||||||||| ||| |||||||| ||||||||| | ||||| |||| ||||||||||| |||||||||||||  ||| |    
T  4070641 cgaaataaatgtgaaaatcacttatttcaataaaaaggaaatagaaaaacgagtcagaggggtgattttgggtcaaaaa-tgaccctaaatcaccccttt 4070543  T
Q  159 ttggtgaatgaag 171  Q
    |||||| ||||||    
T  4070542 ttggtggatgaag 4070530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 4726961 - 4727045
Alignment:
Q  67 agatgtaaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaat 149  Q
    |||||| ||||||| ||||||||||||| ||||||||||||| ||||||| | ||  |||| |||||||||||||||||||||||    
T  4726961 agatgtgaaaatcacttatttcaataaaagggaaatagaaaaacgagttatatggatgattttgggtcaaaaattgaccctaaat 4727045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 37425079 - 37424966
Alignment:
Q  65 atagatgtaaaaatcatttatttcaataaa-gggaaataga----aaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctt 159  Q
    |||||||| ||||||| ||||||||||||| |||||||| |    |||||||||| ||| | |||| ||||||| ||||||||| |||||||  ||||||    
T  37425079 atagatgtgaaaatcacttatttcaataaaagggaaatatatataaaacgagttagaggcgtgattttgggtcagaaattgaccataaatcacccctctt 37424980  T
Q  160 tggtgaatgaagga 173  Q
    ||||| ||||||||    
T  37424979 tggtggatgaagga 37424966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 29310327 - 29310468
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaataaagggaaatagaa 105  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||         ||| |||||| ||||||| ||||||||||||| || || ||||    
T  29310327 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaa------aaacagatgtgaaaatcacttatttcaataaaagggaaaagaa 29310420  T
Q  106 aa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatca 151  Q
    ||  | ||||| ||||| |||| ||| |||||||||||||||||||||    
T  29310421 aaaacaagttagaggggtgattttggatcaaaaattgaccctaaatca 29310468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 41358125 - 41358033
Alignment:
Q  62 gaaatagatgtaaaaatcatttatttcaataaagggaaat-agaaaa-cgagttaaaggggc-gattatgggtcaaaaattgaccctaaatca 151  Q
    ||||||||||| ||||| | ||||||||||||| |||||  |||||| ||||||| |||||  |||| |||||||||||||||||||||||||    
T  41358125 gaaatagatgtgaaaataacttatttcaataaaaggaaaagagaaaaacgagttagagggggtgattttgggtcaaaaattgaccctaaatca 41358033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 6647952 - 6648066
Alignment:
Q  73 aaaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaa 170  Q
    |||||||| ||||||||||||| ||||||  ||||| ||||||| ||| | |||| |||||||||| |||||| ||||||   |||||||| || |||||    
T  6647952 aaaaatcacttatttcaataaaagggaaagcgaaaaacgagttagaggagtgattttgggtcaaaatttgaccataaatcgcccctctttgatggatgaa 6648051  T
Q  171 ggagaataaattagg 185  Q
    ||| |||||| ||||    
T  6648052 ggaaaataaactagg 6648066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 15710629 - 15710513
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggt--caaaaattgaccctaaatcatacct 156  Q
    |||||||||||| ||||||| |||||||||| ||||||||| || ||||||||||| ||||| |||| ||| |   ||||||||||| |||||||  | |    
T  15710629 cgaaatagatgtgaaaatcacttatttcaataaaagggaaagagaaaaacgagttagaggggtgattttggataaaaaaaattgaccataaatcacccat 15710530  T
Q  157 ctttggtgaatgaagga 173  Q
    ||||| || ||||||||    
T  15710529 ctttgatggatgaagga 15710513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 41988258 - 41988169
Alignment:
Q  74 aaaatcatttatttcaataaa-gggaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttg 161  Q
    ||||||| ||||||||| ||| |||||| |||||| ||||||| |||||||||| ||  ||||||||||| |||||||||  ||||||||    
T  41988258 aaaatcacttatttcaacaaaagggaaagagaaaaacgagttagaggggcgattttgaatcaaaaattgatcctaaatcacccctctttg 41988169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 8812178 - 8812291
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaag-ggaaatagaaaa--cgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    |||||||||| | ||||||| ||| |||||||||  ||||||||||||  |  |||| ||||| |||| ||||| |||||||||||||| ||||  |||     
T  8812178 cgaaatagatatgaaaatcacttacttcaataaaaaggaaatagaaaaaacatgttagaggggtgattttgggttaaaaattgaccctatatcacccctt 8812277  T
Q  158 tttggtgaatgaag 171  Q
    ||||||| ||||||    
T  8812278 tttggtggatgaag 8812291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 14910693 - 14910738
Alignment:
Q  63 aaatagatgtaaaaatcatttatttcaat-aaagggaaatagaaaa 107  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||    
T  14910693 aaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaa 14910738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 28423830 - 28423863
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa 94  Q
    |||||||||| |||||||||||||||||||||||    
T  28423830 cgaaatagatataaaaatcatttatttcaataaa 28423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 34843927 - 34843860
Alignment:
Q  133 aaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaa--ttaggttttggtgacggc 198  Q
    ||||||||||  |||||||| ||||||||||  ||||||||||| |||  | ||||||||||||||||    
T  34843927 aaaaattgactataaatcatccctctttggtcgatgaaggagaagaaaactaaggttttggtgacggc 34843860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 11804 - 11910
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaat-aaagggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||| | | | |||| |||||||||||||||| |||||||||   |||    
T  11804 cgaaatagatgtgaaaatcacttatttcaataaaagggaaatagaaaaacgagttagatgagtgattttgggtcaaaaattgacactaaatcatctatct 11903  T
Q  159 ttggtga 165  Q
    |||||||    
T  11904 ttggtga 11910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 213
Target Start/End: Complemental strand, 244723 - 244566
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaagggaaat-agaaaa-cgagttaaaggggcgattatgggtcaaaaa--ttgaccctaaatcatacct 156  Q
    |||||||||||| ||||||| |||||||||||||  ||||  |||||| ||||||| ||||| ||||   ||| |||||  ||||||||||||||  |||    
T  244723 cgaaatagatgtgaaaatcacttatttcaataaaaagaaaagagaaaaacgagttagaggggtgatttatggtaaaaaaaattgaccctaaatcaaccct 244624  T
Q  157 ctttggtgaatgaaggagaataaa-ttaggttttggtgacggcatacaagagagaaaa 213  Q
    |||| ||| |||||| |||| ||| ||||||||||||||||||  |||||||||||||    
T  244623 cttttgtggatgaagaagaagaaacttaggttttggtgacggctcacaagagagaaaa 244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 5559 - 5643
Alignment:
Q  67 agatgtaaaaatcatttatttcaataaagg-gaaatagaaaa-cgagttaaaggggcgattatgggtcaaaaattgaccctaaat 149  Q
    |||||| ||||||| ||||||||||||| | ||||||||||| |||||||||||||| ||| || ||||||||||||||||||||    
T  5559 agatgtgaaaatcacttatttcaataaaagagaaatagaaaaacgagttaaaggggcaattttgagtcaaaaattgaccctaaat 5643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 867 - 727
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatag-aaaacgagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctct 158  Q
    |||||||||||| |||  || ||||||||||||| |||||| || ||||||||||| || |  |||| | ||||||||||||||| ||||||| | || |    
T  867 cgaaatagatgtgaaagccacttatttcaataaaagggaaagaggaaaacgagttagagtgatgatttttggtcaaaaattgaccttaaatcacatcttt 768  T
Q  159 ttggtgaatgaaggagaataaattag-gttttggtgacggc 198  Q
    |||||| ||||||||||| ||| ||| |||||| |||||||    
T  767 ttggtggatgaaggagaagaaactagagttttgatgacggc 727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 12176 - 12318
Alignment:
Q  6 agacgacaaacaaaccaatgttgcacaaagatgatgaaatcacaaaatnnnnnnncgaaatagatgtaaaaatcatttatttcaat-aaagggaaataga 104  Q
    ||||||| |||||||||| || |||| |||| || |||||||||||||       |||||||| ||| ||||||| |||||||||| ||||||||| |||    
T  12176 agacgacgaacaaaccaacgtcgcacgaagacgacgaaatcacaaaataaaaaa-cgaaataggtgtgaaaatcacttatttcaataaaagggaaagaga 12274  T
Q  105 a-aacgagttaaaggggcgattatgggtcaaaaattgaccctaa 147  Q
    | |||||| || || |  |||| |||||||||||||||||||||    
T  12275 agaacgagctagagagatgattttgggtcaaaaattgaccctaa 12318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 198
Target Start/End: Complemental strand, 11103 - 10966
Alignment:
Q  64 aatagatgtaaaaatcatttatttcaataa-agggaaatagaaaac-gagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctctttg 161  Q
    ||||| ||| ||||||| |||||||||||| ||||||| ||||||  |||||| ||||| |||| |  ||||||||||||||| ||||||  | ||||||    
T  11103 aatagctgtgaaaatcacttatttcaataagagggaaaaagaaaaatgagttagaggggtgattttaagtcaaaaattgacccaaaatcacccatctttg 11004  T
Q  162 gtgaatgaaggagaataaatta-ggttttggtgacggc 198  Q
    ||| ||||  ||||| ||| || |||||||||||||||    
T  11003 gtgtatgatagagaagaaactagggttttggtgacggc 10966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 137085 - 137235
Alignment:
Q  61 cgaaatagatgtaaaaatcatttatttcaataaa-gggaaatagaaaac--gagttaaaggggcgattatgggtcaaaaattgaccctaaatcatacctc 157  Q
    |||||||||||| ||||||| |||||||| |||| |||||||||||||   |||||| | |||  ||| ||| |  ||||   | || ||||||  ||||    
T  137085 cgaaatagatgttaaaatcacttatttcattaaaagggaaatagaaaaaatgagttagaagggttattttggatataaaaaaaaacccaaatcacccctc 137184  T
Q  158 tttggtgaatgaaggagaataaattaggttttggtgacggcatacaagaga 208  Q
    ||||||||||||| | ||| ||| ||||||||||||||||| | |||||||    
T  137185 tttggtgaatgaaagtgaagaaactaggttttggtgacggctttcaagaga 137235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 1182 - 1283
Alignment:
Q  122 gattatgggtcaaaaattgaccctaaatcatacctctttggtgaatgaaggagaataaattag-gttttggtgacggcatacaagagagaaaaagggaaa 220  Q
    |||| ||||||||||||||| |||||||||  | ||||||||| ||||| |||||  || ||| |||| |||||||||  |||||||||  |||||||||    
T  1182 gattttgggtcaaaaattga-cctaaatcacccatctttggtggatgaaagagaagtaactagagtttaggtgacggctcacaagagag--aaagggaaa 1278  T
Q  221 agaga 225  Q
    |||||    
T  1279 agaga 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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