View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3963_high_33 (Length: 307)
Name: NF3963_high_33
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 54802533 - 54802694
Alignment:
| Q |
1 |
ccggccataaatcaaaccataaccaaataattaaatgacccaaatatata------ccacttatgtcaaacatattggtgacttctacttttatatacta |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54802533 |
ccggccataaatcaaaccataaccaaataattaaatgacccaaacatataggagtaccacttatgtcaaacatattggtgacttctacttttatatacta |
54802632 |
T |
|
| Q |
95 |
ataaatttgtatttgttttctgtgctataagttggtatttaatatcttcgtatgaaaattta |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54802633 |
ataaatttgtatttgttttctgtgctataagttggtatttaatatcttcgtatgaaaattta |
54802694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 54802774 - 54802832
Alignment:
| Q |
238 |
atatgttattttagcattaccaagaccccaaaaaagttattttagcattgtttattcat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54802774 |
atatgttattttagcattaccaagaccccaaaaaagttattttagcattgtttattcat |
54802832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University