View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_34 (Length: 306)
Name: NF3963_high_34
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 7416905 - 7416635
Alignment:
| Q |
19 |
aaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7416905 |
aaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagac |
7416806 |
T |
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| Q |
119 |
catctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7416805 |
catctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagttta |
7416706 |
T |
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| Q |
219 |
agaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattcat |
289 |
Q |
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| T |
7416705 |
agaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattcat |
7416635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 7425891 - 7425621
Alignment:
| Q |
19 |
aaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagac |
118 |
Q |
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||||||||| |||||||| |||||||| |||||||||||| | |||| ||| ||||| |||| || |||||||||||||||||||||||| |||| ||| |
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| T |
7425891 |
aaaacgccttgagtcttatgagtacatgagaaaacaagagttacatgctttcttgcacgaactatttaattcaaaaaacaaaacaattttgttgaaggac |
7425792 |
T |
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| Q |
119 |
catctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagttta |
218 |
Q |
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| T |
7425791 |
catctttcaactttgagtctcaatgttataagtcgcatggttttgggcaaaaagtatttggagaagagtgaaaatgctattatttcccctgaagagttta |
7425692 |
T |
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| Q |
219 |
agaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattcat |
289 |
Q |
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|||||||||| ||||| |||||||| |||||||| | |||||| |||||||||||||||||||||||||| |
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| T |
7425691 |
agaagatgttagatgaattgtttttgcttaatggggtcctcaatgttggggattttattccttggattcat |
7425621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 26 - 288
Target Start/End: Complemental strand, 7431873 - 7431611
Alignment:
| Q |
26 |
ctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagaccatcttt |
125 |
Q |
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||||||||||| |||||||| |||||| |||| | ||| |||| |||||||||| |||||||||||||| ||||| |||||| |||| |||||||||| |
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| T |
7431873 |
ctcgagtcttatgagtacatgagaaaagaagaattacatatttttctgcataaactcttcaattcaaaaaataaaactattttgttgaaggaccatcttt |
7431774 |
T |
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| Q |
126 |
caactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagtttaagaagat |
225 |
Q |
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||||||| ||||| ||| ||||||| || |||||| | ||||| || |||||||| |||| ||| |||| ||||||||||||| ||||||||| |||| |
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| T |
7431773 |
caacttttagtcttaatattataagccgcatggtgttggggaagaaatacttggagaagagtgaaaatgttattatttcccctgaagagtttaaggagat |
7431674 |
T |
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| Q |
226 |
gttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattca |
288 |
Q |
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|||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
7431673 |
gttggatgagttgtttttgcttaatggggtcttcaatattggggattttattccttggattca |
7431611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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