View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_high_38 (Length: 291)

Name: NF3963_high_38
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_high_38
NF3963_high_38
[»] chr1 (3 HSPs)
chr1 (18-79)||(34725777-34725838)
chr1 (235-279)||(20265145-20265189)
chr1 (18-79)||(3739666-3739729)
[»] scaffold0576 (1 HSPs)
scaffold0576 (235-279)||(4881-4925)
[»] chr8 (1 HSPs)
chr8 (235-279)||(3734430-3734474)
[»] chr7 (1 HSPs)
chr7 (235-279)||(2751621-2751665)
[»] chr6 (1 HSPs)
chr6 (235-279)||(15359897-15359941)
[»] chr2 (2 HSPs)
chr2 (235-279)||(28658977-28659021)
chr2 (41-79)||(4748265-4748303)


Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 34725838 - 34725777
Alignment:
Q  18 atattataataataaatatatcaagcagtgtcggtgtcctgtattttttaaattagcggtgt 79  Q
    |||||| ||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||    
T  34725838 atattaaaataataaatatatctagtggtgtcggtgtcctgcattttttaaattagcggtgt 34725777  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 20265145 - 20265189
Alignment:
Q  235 agagaacatcatgtggtgaatgtctttaaaacactttggagccta 279  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  20265145 agagaacatcatgtggtgaatgtctttaaaacaccttggagccta 20265189  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 3739666 - 3739729
Alignment:
Q  18 atattataataataaatatat--caagcagtgtcggtgtcctgtattttttaaattagcggtgt 79  Q
    |||||||||||||||| ||||  | ||||||||||||||| ||| |||||||||||||||||||    
T  3739666 atattataataataaaaatatacctagcagtgtcggtgtcttgtgttttttaaattagcggtgt 3739729  T

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Target: scaffold0576 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 4881 - 4925
Alignment:
Q  235 agagaacatcatgtggtgaatgtctttaaaacactttggagccta 279  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  4881 agagaacatcatgtggtgaatgtctttaaaacaccttggagccta 4925  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 3734430 - 3734474
Alignment:
Q  235 agagaacatcatgtggtgaatgtctttaaaacactttggagccta 279  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  3734430 agagaacatcatgtggtgaatgtctttaaaacaccttggagccta 3734474  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 2751665 - 2751621
Alignment:
Q  235 agagaacatcatgtggtgaatgtctttaaaacactttggagccta 279  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  2751665 agagaacatcatgtggtgaatgtctttaaaacaccttggagccta 2751621  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 15359897 - 15359941
Alignment:
Q  235 agagaacatcatgtggtgaatgtctttaaaacactttggagccta 279  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  15359897 agagaacatcatgtggtgaatgtctttaaaacaccttggagccta 15359941  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 28658977 - 28659021
Alignment:
Q  235 agagaacatcatgtggtgaatgtctttaaaacactttggagccta 279  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  28658977 agagaacatcatgtggtgaatgtctttaaaacaccttggagccta 28659021  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 4748265 - 4748303
Alignment:
Q  41 agcagtgtcggtgtcctgtattttttaaattagcggtgt 79  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  4748265 agcagtgtcggtgtcctatattttttacattagcggtgt 4748303  T

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