View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_43 (Length: 269)
Name: NF3963_high_43
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 50753071 - 50753325
Alignment:
| Q |
1 |
tacttttgagaatggctcgcatttgcattacctttccgatgctctttgtagcaatgttctttctctctgtcgttgcacaatatccaacgacatctcctaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50753071 |
tacttttgagaatggctcgcatttgcattaccttttcgatgctctttgtagcaatgttctttctctctgtcgttgcacaatatccaacggcatctcctaa |
50753170 |
T |
|
| Q |
101 |
ggcttctgttgtgattaccattggcactggtccatctattgtcaactctctgtcgcctattactccaccatcgatgtcaccttctctcccaccatcatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50753171 |
ggcttctgttgtgattaccattggcactggtccatctattgtcaactctctgtcgcctattactccaccatcggtgtcaccttctctcccaccatcatca |
50753270 |
T |
|
| Q |
201 |
atttcttcccctcctgctcatgctcctgcacctcacaaaagtggtgcggcctccc |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50753271 |
atttcttcccctcctgctcatgctcctgcacctcacaaaagtggtgcggcctccc |
50753325 |
T |
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