View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_45 (Length: 256)
Name: NF3963_high_45
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38814219 - 38813983
Alignment:
| Q |
1 |
ttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaacatttgggagacgaaga |
100 |
Q |
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| T |
38814219 |
ttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaacatttgggagacgaaga |
38814120 |
T |
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| Q |
101 |
aaattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaattgaaaccatttaggtgaatgataagacacgagtgtccatcacagagct |
200 |
Q |
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| T |
38814119 |
aaattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaattgaaaccatttaggtgaatgataagacacgagtgtccatcacagaact |
38814020 |
T |
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| Q |
201 |
gcagggttgcacatttggatttggtaactgttcctgg |
237 |
Q |
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| T |
38814019 |
gcagtgttgcacatttggatttggtaactgttcctgg |
38813983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 38818615 - 38818506
Alignment:
| Q |
5 |
acagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaacatttgggagacgaagaaaat |
104 |
Q |
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| T |
38818615 |
acagcatttctacatccaatcccatagtatgtttccaacttggccacattgtctttgattccaactccaacaaaggtaacatttggcatacgaagaaagt |
38818516 |
T |
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| Q |
105 |
taagcagtga |
114 |
Q |
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| T |
38818515 |
taagtagtga |
38818506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 38820841 - 38820731
Alignment:
| Q |
5 |
acagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaacatttgggagacgaagaaaat |
104 |
Q |
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||||||||||| |||| || ||||| | |||||| | ||||||||||| | ||||| ||||| |||||||| ||| || ||| ||||||||||||| |
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| T |
38820841 |
acagcatttctgcatctaaccccatattccttctcaagtttagccaaattatgattgataccaacaccaacaaaggtataatctggaagacgaagaaaat |
38820742 |
T |
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| Q |
105 |
taagcagtgat |
115 |
Q |
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|||||| |||| |
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| T |
38820741 |
taagcaatgat |
38820731 |
T |
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