View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_47 (Length: 252)
Name: NF3963_high_47
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 31220781 - 31220545
Alignment:
| Q |
1 |
aaagtctgaaaattgataatggcatttcannnnnnnatttcttatattccattttgggtttggagttgaccaattgttcactctgctctgttaaactact |
100 |
Q |
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| T |
31220781 |
aaagtctgaaaattgataatggcatctcattttcttatttcttatattccattttgggtttggagttgaccaattgttcactctgctctgttaaactact |
31220682 |
T |
|
| Q |
101 |
ctaatctgtcagtcattatcttatttaatagactggccaactatcacataaaagttgggccatagaaaaaagagtaaccttttgattcatgtgaatttgg |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31220681 |
ctaatctgttagtcattatcttatttaatagactggccaactatcacataaaagttgggccatagaaaaaagagtaaccttttgattcatgtgaatttgg |
31220582 |
T |
|
| Q |
201 |
aaaacatcttggaaactcttgtggctgaattttggat |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31220581 |
aaaacatcttggaaactcttgtggctgaattttggat |
31220545 |
T |
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