View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3963_high_53 (Length: 240)
Name: NF3963_high_53
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 42409700 - 42409491
Alignment:
| Q |
1 |
ttggcacttggaagattcgaacctaagacatgagcacactccttggtctcgagtcttcgctcttcaccaccggggtaaccaacccctgggggttataata |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42409700 |
ttggcacttggaagattcaaacctaagacatgagcacactccttggtctcgagtcttcgctcttcaccaccggggtaaccaacccctgggggttataata |
42409601 |
T |
|
| Q |
101 |
aacatttgattcttaactaagaaaaaactcatgaaggaaaacacctatagatgttacatccttaaaggcgcatgcccaagtaagaacatgaagaaatcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42409600 |
aacatttgattcttaactaagaaaaaactcatgaaggaaaacacccatagatgttacagccttaaaggcgcatgcccaagtaagaacatgaagaaatcac |
42409501 |
T |
|
| Q |
201 |
actatccttg |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
42409500 |
actatccttg |
42409491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University