View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_high_56 (Length: 235)

Name: NF3963_high_56
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_high_56
NF3963_high_56
[»] chr7 (6 HSPs)
chr7 (1-221)||(46530121-46530341)
chr7 (1-221)||(46522688-46522908)
chr7 (38-218)||(46324118-46324298)
chr7 (70-218)||(46519349-46519497)
chr7 (49-218)||(46328561-46328730)
chr7 (100-191)||(46464170-46464261)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46530341 - 46530121
Alignment:
Q  1 ttgttttcgatgtatgtgttagtgtttcataatcagagatcccaattctaatgaaagatgcattattacttgtattgcagaaattgggagctaatggcac 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46530341 ttgttttcgatgtatgtgttagtgtttcataaacagagatcccaattctaatgaaagatgcattattacttgtattgcagaaattgggagctaatggcac 46530242  T
Q  101 catggaatggggtgaaaatcaaggtgcctgtgaaattcattacaggtgatttggatatggtgtacacctcactaaacgtgaaggagtatatccatggtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46530241 catggaatggggtgaaaatcaaggtgcctgtgaaattcattacaggtgatttggatatggtgtacacctcactaaacatgaaggagtatatccatggtgg 46530142  T
Q  201 gggattcaaggaagatgttcc 221  Q
    |||||||||||||||||||||    
T  46530141 gggattcaaggaagatgttcc 46530121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46522908 - 46522688
Alignment:
Q  1 ttgttttcgatgtatgtgttagtgtttcataatcagagatcccaattctaatgaaagatgcattattacttgtattgcagaaattgggagctaatggcac 100  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |    
T  46522908 ttgttttcgatgtatgtgttagtgtttcatatacagagatcccaattctaatgaaagatgcatttttacttgtatggcagaaattgggagctgatggcgc 46522809  T
Q  101 catggaatggggtgaaaatcaaggtgcctgtgaaattcattacaggtgatttggatatggtgtacacctcactaaacgtgaaggagtatatccatggtgg 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46522808 catggaatggagtgaaaatcaaggtgcctgtgaaattcattacaggtgatttggatatggtgtacacctcactaaacatgaaggagtatatccatggtgg 46522709  T
Q  201 gggattcaaggaagatgttcc 221  Q
    |||||||||||||||||||||    
T  46522708 gggattcaaggaagatgttcc 46522688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 46324118 - 46324298
Alignment:
Q  38 gatcccaattctaatgaaagatgcattattacttgtattgcagaaattgggagctaatggcaccatggaatggggtgaaaatcaaggtgcctgtgaaatt 137  Q
    |||| |||||||||||| | |  |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  46324118 gatctcaattctaatgacacaaacattattacttgtattgcagaaattgggagctgatggcaccatggaatggagtgaaaatcaaggtgcctgtgaaatt 46324217  T
Q  138 cattacaggtgatttggatatggtgtacacctcactaaacgtgaaggagtatatccatggtgggggattcaaggaagatgt 218  Q
    |||||||||||| || || || || |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||    
T  46324218 cattacaggtgacttagacattgtatacacctcaccaaaggtgaaggagtatatccatggtggaggattcaaggaagatgt 46324298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 46519497 - 46519349
Alignment:
Q  70 ttgtattgcagaaattgggagctaatggcaccatggaatggggtgaaaatcaaggtgcctgtgaaattcattacaggtgatttggatatggtgtacacct 169  Q
    ||||||||||||||||||||||| |  |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46519497 ttgtattgcagaaattgggagctcacagcaccatggagtggagtgaaaatcaaggtgcctgtgaaattcattacaggtgatttggatatggtgtacacct 46519398  T
Q  170 cactaaacgtgaaggagtatatccatggtgggggattcaaggaagatgt 218  Q
    | | | ||||||||||||||||||||||||| |||||||||||||||||    
T  46519397 cgccacacgtgaaggagtatatccatggtggaggattcaaggaagatgt 46519349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 46328561 - 46328730
Alignment:
Q  49 taatgaaagatgcattattacttgtattgcagaaattgggagctaatggcaccatggaatggggtgaaaatcaaggtgcctgtgaaattcattacaggtg 148  Q
    |||||| ||||  ||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| || ||||    
T  46328561 taatgatagataaattgttacttgtattgcagaaattgggagctaacggcaccatggactggagtgaaaatcaaggtgcctgtgaaattcataacgggtg 46328660  T
Q  149 atttggatatggtgtacacctcactaaacgtgaaggagtatatccatggtgggggattcaaggaagatgt 218  Q
    | || || ||||||||||||||  | ||| |||| |||||||||||||| || || ||||||||||||||    
T  46328661 agttagacatggtgtacacctcgtttaacttgaaagagtatatccatggaggagggttcaaggaagatgt 46328730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 46464261 - 46464170
Alignment:
Q  100 ccatggaatggggtgaaaatcaaggtgcctgtgaaattcattacaggtgatttggatatggtgtacacctcactaaacgtgaaggagtatat 191  Q
    ||||||| ||| ||||||| |  |||||| ||||||||||||||||||||  | |||||||||||||| || |||  | |||||||||||||    
T  46464261 ccatggactggagtgaaaaccttggtgccagtgaaattcattacaggtgagctagatatggtgtacacttcgctaggcatgaaggagtatat 46464170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University