View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_58 (Length: 232)
Name: NF3963_high_58
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 54809200 - 54808976
Alignment:
| Q |
1 |
tgcaagggaggtgtttgatgatgttttggatagagatgtttttgtttggactgcgatgatttctggccttgcttgtcacgggatgtgtaaagaagctatt |
100 |
Q |
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| T |
54809200 |
tgcaagggaggtgtttgatgatgttttggatagagatgtttttgtttggactgcgatgatttatggccttgcttgtcacgggatgtgtaaagaagctatt |
54809101 |
T |
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| Q |
101 |
gagttgtttcttgaaatggaaacttgtaatgtaaaacccgatgagaggacaattacggtggttttatcggcgtataggaatgcaggcttggttcgtgaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54809100 |
gagttgtttcttgaaatggaaacttgtaatgtaaaacccgatgagaggacaattatggtggttttatcggcgtataggaatgcaggcttggttcgtgaag |
54809001 |
T |
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| Q |
201 |
gttacatgtttttcgatgatgtcca |
225 |
Q |
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|||||||||||||| |||||||||| |
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| T |
54809000 |
gttacatgtttttcaatgatgtcca |
54808976 |
T |
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