View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_6 (Length: 552)
Name: NF3963_high_6
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Complemental strand, 41857161 - 41856670
Alignment:
| Q |
9 |
agcaaaggtagaagaaaatccaattgaaaatattctgtatcttttgaattcctagagaaattaaagttccaacaattaccatctagtactatgaaaattg |
108 |
Q |
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| T |
41857161 |
agcaaaggtagaagaaaatccaattgaaaatattctgtatcttttgaattcctagagaaattaaagttccaacaattaacatctagtactatgaaaattg |
41857062 |
T |
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| Q |
109 |
aagatgagatcatgagagactgatactgggagaaagacaaaataatcaaggtttcgcctccatgaatattaaattccttgtgcaccccaacctaagattt |
208 |
Q |
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| T |
41857061 |
aagatgagatcatgagagactgatactgggagaaagacaaaataatcaaggtttcgcctccatgaatattaaattccttgtgcaccccaacctaagattt |
41856962 |
T |
|
| Q |
209 |
acctagaacccaagtgtctaacctgataatgatta-ttacctagattcccgcgcttagtcacttagctaaaccatacttgttaacccatttattcagcaa |
307 |
Q |
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| T |
41856961 |
acctagaacccaagtgtctaacctgataatgattacttacctagattcccattcttagtcacttagctaaaccatacttgttaacccatttattcagcaa |
41856862 |
T |
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| Q |
308 |
t--tatatgactttcaatgcaactgtgtgtgatctctttcaaaaacatgtatttttgtggtctctatcttagcaagtgtaaaatgtgatcacttttgcta |
405 |
Q |
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| T |
41856861 |
ttatatatgactttcaatgcaattgtgtgtgatctctttcaaaaacatgtatttctgtggtctctatcttagcaagtgtaaaatgtgatcacttttgcta |
41856762 |
T |
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| Q |
406 |
ttactggctgaaaagaaattttctaatgttcattgtgatgatttgtgtgtatttcatgagtcagatattgtacattgtaaaatacatagctt |
497 |
Q |
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| T |
41856761 |
ttactggctgaaaagaaattttctaatgttcattgtgatgatttgtgtgtatttcatgagtcagatattgtacattgtaaaatacatagctt |
41856670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 12789573 - 12789691
Alignment:
| Q |
265 |
gtcacttagctaaaccatacttgttaacccatttattcagcaat--tatatgactttcaatgcaactgtgtgtgatctctttcaaaaacatgtatttttg |
362 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||| | ||||||||||| || |
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| T |
12789573 |
gtcacctagcaaaaccatacttgttaacccatttattcaacaattatatatgactttc-atgcaa--ttgtgtgatatctttc-agaacatgtatttctg |
12789668 |
T |
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| Q |
363 |
tggtctctatcttagcaagtgta |
385 |
Q |
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|||||| |||||||||||||||| |
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| T |
12789669 |
tggtctatatcttagcaagtgta |
12789691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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