View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_60 (Length: 224)
Name: NF3963_high_60
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 46951541 - 46951746
Alignment:
| Q |
11 |
attattctttgggaacacacaatcatgaattttgagatattttcgcatcaaacgaacgagtcaagatcctccattttgtgaacatgttattgtatttagg |
110 |
Q |
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| T |
46951541 |
attattctttgggaacacacaatcatgaatgttgagatattttcgcatcaaacgaacgagtcaagatcctccattttgtgaacatgttattgtatttagg |
46951640 |
T |
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| Q |
111 |
ttcttccctttatttataataacataatactctctatctaagtgaatttttggattatgtgcacattttaattact--tcaagttaacgcactgagatga |
208 |
Q |
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| T |
46951641 |
ttcttccctttatttataataacataatactctctatctaagtgaatttttggattatgtgcacattttaattacttctcaagttaacgcaccgagatga |
46951740 |
T |
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| Q |
209 |
attatg |
214 |
Q |
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|||||| |
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| T |
46951741 |
attatg |
46951746 |
T |
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