View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_62 (Length: 217)
Name: NF3963_high_62
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_62 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 31221286 - 31221070
Alignment:
| Q |
1 |
gaatataaagttgtttgaagtgagttatttgagcttatgaaattgtctgagagaacttatgataacaacttatattgtgtttataaattgttttcagctt |
100 |
Q |
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| T |
31221286 |
gaatataaagttgtttgaagtgagttatttgagcttatgaaattgtctgagagaacttatgataacaacttatattgtgttcataaattgttttcagctt |
31221187 |
T |
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| Q |
101 |
atctttaaaaggtctcaaggacagcttatgaaaataacttatagattacacgaaacagttcgactgtacttcatcttctgttatagaaagagtttattca |
200 |
Q |
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| T |
31221186 |
atctttaaaaggtctcaaggacagcttatgaaaataacttataaattacacgaaacagttcgactgtacttcatcttctgttatagaaagagtttattca |
31221087 |
T |
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| Q |
201 |
taagctcaaattaagtt |
217 |
Q |
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| T |
31221086 |
taagctcaaattaagtt |
31221070 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 33714252 - 33714352
Alignment:
| Q |
89 |
tgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttatagattacacgaaacagttcgactgtacttcatcttctgttatagaa |
188 |
Q |
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| T |
33714252 |
tgttttcagcttatttttataagctctcccagatagcttatgaaaatagcttatagattgtacaaaatagtttgactttattttatcttgtgttatagaa |
33714351 |
T |
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| Q |
189 |
a |
189 |
Q |
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| T |
33714352 |
a |
33714352 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 14295605 - 14295459
Alignment:
| Q |
44 |
tgtctgagagaacttatgataacaacttatattgtgtttataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttata |
143 |
Q |
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| T |
14295605 |
tgtctgagagagcttatgaaaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttata |
14295506 |
T |
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| Q |
144 |
gattacacg-aaacagttcgactgtacttcatcttctgttatagaaa |
189 |
Q |
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| T |
14295505 |
gcttatatgaaaacagtttgactttattttatcttttgttatagaaa |
14295459 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 19719099 - 19719042
Alignment:
| Q |
50 |
agagaacttatgataacaacttatattgtgtttataaattgttttcagcttatcttta |
107 |
Q |
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| T |
19719099 |
agagaacttatgaaaacaacttatgacatgttcataaactgttttcagcttatcttta |
19719042 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 2514738 - 2514701
Alignment:
| Q |
107 |
aaaaggtctcaaggacagcttatgaaaataacttatag |
144 |
Q |
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| T |
2514738 |
aaaagatctccaggacagcttatgaaaataacttatag |
2514701 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 680568 - 680491
Alignment:
| Q |
78 |
tgtttataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttatagattacacgaaa |
155 |
Q |
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| T |
680568 |
tgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttatacgaaa |
680491 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 33527199 - 33527280
Alignment:
| Q |
125 |
cttatgaaaataacttatagattacacgaaa-cagttcgactgtacttcatcttctgttatagaaagagtttattcataagc |
205 |
Q |
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| T |
33527199 |
cttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagc |
33527280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 25479636 - 25479580
Alignment:
| Q |
88 |
ttgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttatag |
144 |
Q |
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| T |
25479636 |
ttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatag |
25479580 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 35064947 - 35064896
Alignment:
| Q |
48 |
tgagagaacttatgataacaacttatattgtgtttataaattgttttcagcttat |
102 |
Q |
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| T |
35064947 |
tgagagaacttatgaaaacaacctacat---gtttataaattgttttcagcttat |
35064896 |
T |
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